RNA–Protein interactions for RNA: ENST00000478423.6

NPHP4-208, Transcript of nephrocystin 4, humanhuman

TSL 2

Gene NPHP4, Length 4,467 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-208ENST00000478423 SMIM6P0DI80 62 aa11.84□□□□□ -0.51
NPHP4-208ENST00000478423 ID1P41134 155 aa11.84□□□□□ -0.51
NPHP4-208ENST00000478423 RBPMS2Q6ZRY4 209 aaKnown RBP11.84□□□□□ -0.51
NPHP4-208ENST00000478423 MRPL32Q9BYC8 188 aaKnown RBP11.84□□□□□ -0.51
NPHP4-208ENST00000478423 CBLN4Q9NTU7 201 aa11.84□□□□□ -0.51
NPHP4-208ENST00000478423 TGIF2-C20orf24A0A0A6YYL0 155 aa11.84□□□□□ -0.51
NPHP4-208ENST00000478423 ACAA1P09110 424 aaPredicted RBP11.84□□□□□ -0.51
NPHP4-208ENST00000478423 VAMP3Q15836 100 aa11.84□□□□□ -0.51
NPHP4-208ENST00000478423 SMUG1Q53HV7 270 aa11.84□□□□□ -0.51
NPHP4-208ENST00000478423 TMEM133Q9H2Q1 129 aa11.84□□□□□ -0.51
NPHP4-208ENST00000478423 RBFOX2O43251 390 aaKnown RBP eCLIP11.84□□□□□ -0.515e-8■■■■■ 28.4
NPHP4-208ENST00000478423 TMEM177Q53S58 311 aa11.84□□□□□ -0.51
NPHP4-208ENST00000478423 TMEM191AQ9H0A3 160 aa11.84□□□□□ -0.51
NPHP4-208ENST00000478423 TMEM189A5PLL7 270 aa11.83□□□□□ -0.52
NPHP4-208ENST00000478423 CD24P25063 80 aa11.83□□□□□ -0.52
NPHP4-208ENST00000478423 PLA2G2CQ5R387 149 aa11.83□□□□□ -0.52
NPHP4-208ENST00000478423 ZNF474Q6S9Z5 364 aaPredicted RBP11.83□□□□□ -0.52
NPHP4-208ENST00000478423 GOLT1AQ6ZVE7 132 aa11.83□□□□□ -0.52
NPHP4-208ENST00000478423 ZNF738Q8NE65 137 aa11.83□□□□□ -0.52
NPHP4-208ENST00000478423 RPUSD1Q9UJJ7 312 aaKnown RBP11.83□□□□□ -0.52
NPHP4-208ENST00000478423 CXorf65A6NEN9 183 aa11.83□□□□□ -0.52
NPHP4-208ENST00000478423 CGAP01215 116 aa11.83□□□□□ -0.52
NPHP4-208ENST00000478423 NBEAP1P0C6P0 100 aa11.83□□□□□ -0.52
NPHP4-208ENST00000478423 TM4SF20Q53R12 229 aa11.83□□□□□ -0.52
NPHP4-208ENST00000478423 DGAT2L7PQ6IED9 249 aa11.83□□□□□ -0.52
NPHP4-208ENST00000478423 TMEM116Q8NCL8 245 aa11.83□□□□□ -0.52
NPHP4-208ENST00000478423 METRNQ9UJH8 293 aa11.83□□□□□ -0.52
NPHP4-208ENST00000478423 A0A0G2JNJ9 132 aa11.83□□□□□ -0.52
NPHP4-208ENST00000478423 E9PQ18 207 aa11.83□□□□□ -0.52
NPHP4-208ENST00000478423 UPK2O00526 184 aa11.83□□□□□ -0.52
NPHP4-208ENST00000478423 CACNG8Q8WXS5 425 aa11.83□□□□□ -0.52
NPHP4-208ENST00000478423 Q9UFV3 132 aa11.83□□□□□ -0.52
NPHP4-208ENST00000478423 MGPP08493 103 aa11.82□□□□□ -0.52
NPHP4-208ENST00000478423 ATP5G2Q06055 141 aa11.82□□□□□ -0.52
NPHP4-208ENST00000478423 C7orf69Q9H7B7 122 aa11.82□□□□□ -0.52
NPHP4-208ENST00000478423 MED13Q9UHV7 2174 aa11.82□□□□□ -0.52
NPHP4-208ENST00000478423 YLPM1P49750 1951 aaKnown RBP11.82□□□□□ -0.52
NPHP4-208ENST00000478423 ZNF98A6NK75 572 aa11.82□□□□□ -0.52
NPHP4-208ENST00000478423 NPPCP23582 126 aa11.82□□□□□ -0.52
NPHP4-208ENST00000478423 OR4D5Q8NGN0 318 aa11.82□□□□□ -0.52
NPHP4-208ENST00000478423 OR10J6PQ8NGY7 276 aa11.82□□□□□ -0.52
NPHP4-208ENST00000478423 IGHV3-49A0A0A0MS15 119 aa11.82□□□□□ -0.52
NPHP4-208ENST00000478423 SRP19P09132 144 aaKnown RBP11.82□□□□□ -0.52
NPHP4-208ENST00000478423 FAM106AQ4KMX7 169 aa11.82□□□□□ -0.52
NPHP4-208ENST00000478423 CENPWQ5EE01 88 aa11.82□□□□□ -0.52
NPHP4-208ENST00000478423 TMEM144Q7Z5S9 345 aa11.82□□□□□ -0.52
NPHP4-208ENST00000478423 HIST1H2BAQ96A08 127 aa11.82□□□□□ -0.52
NPHP4-208ENST00000478423 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP11.81□□□□□ -0.52
NPHP4-208ENST00000478423 C15orf61A6NNL5 157 aa11.81□□□□□ -0.52
NPHP4-208ENST00000478423 MLNRO43193 412 aa11.81□□□□□ -0.52
NPHP4-208ENST00000478423 CA7P43166 264 aa11.81□□□□□ -0.52
NPHP4-208ENST00000478423 FOXA2Q9Y261 457 aaPredicted RBP11.81□□□□□ -0.52
NPHP4-208ENST00000478423 FREM1Q5H8C1 2179 aa11.81□□□□□ -0.52
NPHP4-208ENST00000478423 IGHV3OR16-8A0A075B7F1 116 aa11.81□□□□□ -0.52
NPHP4-208ENST00000478423 CD81P60033 236 aa11.81□□□□□ -0.52
NPHP4-208ENST00000478423 ZNF672Q499Z4 452 aaPredicted RBP11.81□□□□□ -0.52
NPHP4-208ENST00000478423 CENPFP49454 3210 aa11.81□□□□□ -0.52
NPHP4-208ENST00000478423 IGHV3-23P01764 117 aa11.81□□□□□ -0.52
NPHP4-208ENST00000478423 HLA-DQA1P01909 254 aa11.81□□□□□ -0.52
NPHP4-208ENST00000478423 SRSF7Q16629 238 aaKnown RBP eCLIP11.81□□□□□ -0.52
NPHP4-208ENST00000478423 ATRAIDQ6UW56 229 aa11.81□□□□□ -0.52
NPHP4-208ENST00000478423 CD177Q8N6Q3 437 aa11.81□□□□□ -0.52
NPHP4-208ENST00000478423 SRSF12Q8WXF0 261 aaKnown RBP11.81□□□□□ -0.52
NPHP4-208ENST00000478423 C21orf62Q9NYP8 219 aa11.81□□□□□ -0.52
NPHP4-208ENST00000478423 CARHSP1Q9Y2V2 147 aaKnown RBP11.81□□□□□ -0.52
NPHP4-208ENST00000478423 IGKV3-15P01624 115 aa11.8□□□□□ -0.52
NPHP4-208ENST00000478423 ICAM4Q14773 271 aa11.8□□□□□ -0.52
NPHP4-208ENST00000478423 KIAA1644Q3SXP7 199 aa11.8□□□□□ -0.52
NPHP4-208ENST00000478423 C19orf35Q6ZS72 473 aa11.8□□□□□ -0.52
NPHP4-208ENST00000478423 PPP1R27Q86WC6 154 aa11.8□□□□□ -0.52
NPHP4-208ENST00000478423 VN1R17PQ8TDU5 208 aa11.8□□□□□ -0.52
NPHP4-208ENST00000478423 FBXL7Q9UJT9 491 aa11.8□□□□□ -0.52
NPHP4-208ENST00000478423 TRGV3P03979 118 aa11.8□□□□□ -0.52
NPHP4-208ENST00000478423 OR9G9P0C7N8 305 aa11.8□□□□□ -0.52
NPHP4-208ENST00000478423 EBLN2Q6P2I7 272 aa11.8□□□□□ -0.52
NPHP4-208ENST00000478423 COLCA1Q6ZS62 124 aa11.8□□□□□ -0.52
NPHP4-208ENST00000478423 MAP1LC3CQ9BXW4 147 aa11.8□□□□□ -0.52
NPHP4-208ENST00000478423 ARFGEF3Q5TH69 2177 aa11.8□□□□□ -0.52
NPHP4-208ENST00000478423 IGF2RP11717 2491 aa11.8□□□□□ -0.52
NPHP4-208ENST00000478423 TGFAP01135 160 aa11.8□□□□□ -0.52
NPHP4-208ENST00000478423 THBDP07204 575 aa11.8□□□□□ -0.52
NPHP4-208ENST00000478423 TWIST1Q15672 202 aa11.8□□□□□ -0.52
NPHP4-208ENST00000478423 OR4B1Q8NGF8 309 aa11.8□□□□□ -0.52
NPHP4-208ENST00000478423 RNASEH2CQ8TDP1 164 aaKnown RBP11.8□□□□□ -0.52
NPHP4-208ENST00000478423 EEF1AKMT3Q96AZ1 226 aa11.8□□□□□ -0.52
NPHP4-208ENST00000478423 SLC25A33Q9BSK2 321 aa11.8□□□□□ -0.52
NPHP4-208ENST00000478423 PAM16Q9Y3D7 125 aa11.8□□□□□ -0.52
NPHP4-208ENST00000478423 A0A087X0M5 115 aa11.79□□□□□ -0.52
NPHP4-208ENST00000478423 A0A1B0GX30 115 aa11.79□□□□□ -0.52
NPHP4-208ENST00000478423 ATP5G3P48201 142 aa11.79□□□□□ -0.52
NPHP4-208ENST00000478423 RAB9AP51151 201 aa11.79□□□□□ -0.52
NPHP4-208ENST00000478423 HEPN1Q6WQI6 88 aa11.79□□□□□ -0.52
NPHP4-208ENST00000478423 GLRX5Q86SX6 157 aa11.79□□□□□ -0.52
NPHP4-208ENST00000478423 DTX1Q86Y01 620 aa11.79□□□□□ -0.52
NPHP4-208ENST00000478423 SFRP2Q96HF1 295 aa11.79□□□□□ -0.52
NPHP4-208ENST00000478423 PGLYRP4Q96LB8 373 aa11.79□□□□□ -0.52
NPHP4-208ENST00000478423 GPR61Q9BZJ8 451 aa11.79□□□□□ -0.52
NPHP4-208ENST00000478423 WNT10AQ9GZT5 417 aa11.79□□□□□ -0.52
NPHP4-208ENST00000478423 LOC389332A0A1B0GUA5 103 aa11.79□□□□□ -0.52
NPHP4-208ENST00000478423 ARPC1AQ92747 370 aa11.79□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 60.9 ms