RNA–Protein interactions for RNA: ENST00000477489.1

LDB3-206, Transcript of LIM domain binding 3, humanhuman

TSL 1 (best)

Gene LDB3, Length 433 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3-206ENST00000477489 SSX9Q7RTT3 188 aa5.39□□□□□ -1.55
LDB3-206ENST00000477489 PNKDQ8N490 385 aa5.39□□□□□ -1.55
LDB3-206ENST00000477489 ZNF114Q8NC26 417 aa5.39□□□□□ -1.55
LDB3-206ENST00000477489 BPIFCQ8NFQ6 507 aa5.39□□□□□ -1.55
LDB3-206ENST00000477489 OR4P4Q8NGL7 312 aa5.39□□□□□ -1.55
LDB3-206ENST00000477489 OR1L6Q8NGR2 347 aa5.39□□□□□ -1.55
LDB3-206ENST00000477489 P2RX4Q99571 388 aa5.39□□□□□ -1.55
LDB3-206ENST00000477489 TXNDC17Q9BRA2 123 aa5.39□□□□□ -1.55
LDB3-206ENST00000477489 NPCDR1Q9BY65 106 aa5.39□□□□□ -1.55
LDB3-206ENST00000477489 KRTAP9-9Q9BYP9 154 aa5.39□□□□□ -1.55
LDB3-206ENST00000477489 KRTAP9-4Q9BYQ2 154 aa5.39□□□□□ -1.55
LDB3-206ENST00000477489 NDUFA4L2Q9NRX3 87 aa5.39□□□□□ -1.55
LDB3-206ENST00000477489 TET2Q6N021 2002 aaPredicted RBP5.38□□□□□ -1.55
LDB3-206ENST00000477489 IGHV2-70DA0A0C4DH43 119 aa5.38□□□□□ -1.55
LDB3-206ENST00000477489 TEX50A0A1B0GTY4 177 aa5.38□□□□□ -1.55
LDB3-206ENST00000477489 A0A1W2PPR1 153 aa5.38□□□□□ -1.55
LDB3-206ENST00000477489 RBFOX3A6NFN3 312 aa5.38□□□□□ -1.55
LDB3-206ENST00000477489 SRRM4A7MD48 611 aaKnown RBP5.38□□□□□ -1.55
LDB3-206ENST00000477489 SEC14L6B5MCN3 397 aa5.38□□□□□ -1.55
LDB3-206ENST00000477489 FAM157AC9JC47 383 aa5.38□□□□□ -1.55
LDB3-206ENST00000477489 F8W036 122 aa5.38□□□□□ -1.55
LDB3-206ENST00000477489 C19orf84I3L1E1 186 aa5.38□□□□□ -1.55
LDB3-206ENST00000477489 ACTL6BO94805 426 aa5.38□□□□□ -1.55
LDB3-206ENST00000477489 IGLV2-23P01705 113 aa5.38□□□□□ -1.55
LDB3-206ENST00000477489 IFNA4P05014 189 aa5.38□□□□□ -1.55
LDB3-206ENST00000477489 CRYGBP07316 175 aa5.38□□□□□ -1.55
LDB3-206ENST00000477489 RNF224P0DH78 156 aa5.38□□□□□ -1.55
LDB3-206ENST00000477489 FGF7P21781 194 aa5.38□□□□□ -1.55
LDB3-206ENST00000477489 RUNX1Q01196 453 aa5.38□□□□□ -1.55
LDB3-206ENST00000477489 ZNF506Q5JVG8 444 aa5.38□□□□□ -1.55
LDB3-206ENST00000477489 UTF1Q5T230 341 aa5.38□□□□□ -1.55
LDB3-206ENST00000477489 TPTE2P1Q5T6R2 138 aa5.38□□□□□ -1.55
LDB3-206ENST00000477489 PVRIGQ6DKI7 326 aa5.38□□□□□ -1.55
LDB3-206ENST00000477489 SPSB3Q6PJ21 355 aa5.38□□□□□ -1.55
LDB3-206ENST00000477489 TEPPQ6URK8 271 aa5.38□□□□□ -1.55
LDB3-206ENST00000477489 RBMS3Q6XE24 437 aaKnown RBP5.38□□□□□ -1.55
LDB3-206ENST00000477489 WFDC3Q8IUB2 231 aa5.38□□□□□ -1.55
LDB3-206ENST00000477489 VKORC1L1Q8N0U8 176 aa5.38□□□□□ -1.55
LDB3-206ENST00000477489 Q8N7P7 452 aa5.38□□□□□ -1.55
LDB3-206ENST00000477489 TMEM190Q8WZ59 177 aa5.38□□□□□ -1.55
LDB3-206ENST00000477489 NARS2Q96I59 477 aaKnown RBP5.38□□□□□ -1.55
LDB3-206ENST00000477489 PIMREGQ9BSJ6 248 aa5.38□□□□□ -1.55
LDB3-206ENST00000477489 ACTR3CQ9C0K3 210 aaPredicted RBP5.38□□□□□ -1.55
LDB3-206ENST00000477489 SLC35B3Q9H1N7 401 aa5.38□□□□□ -1.55
LDB3-206ENST00000477489 LPAR2Q9HBW0 351 aa5.38□□□□□ -1.55
LDB3-206ENST00000477489 TREM1Q9NP99 234 aa5.38□□□□□ -1.55
LDB3-206ENST00000477489 RPRMQ9NS64 109 aa5.38□□□□□ -1.55
LDB3-206ENST00000477489 ONECUT1Q9UBC0 465 aa5.38□□□□□ -1.55
LDB3-206ENST00000477489 LSM4Q9Y4Z0 139 aaKnown RBP5.38□□□□□ -1.55
LDB3-206ENST00000477489 SETD2Q9BYW2 2564 aaPredicted RBP5.38□□□□□ -1.55
LDB3-206ENST00000477489 MED13LQ71F56 2210 aa5.38□□□□□ -1.55
LDB3-206ENST00000477489 DNHD1Q96M86 4753 aa5.38□□□□□ -1.55
LDB3-206ENST00000477489 TRAV3A0A0B4J244 114 aa5.37□□□□□ -1.55
LDB3-206ENST00000477489 A0A1W2PPI3 338 aa5.37□□□□□ -1.55
LDB3-206ENST00000477489 SMCO3A2RU48 225 aa5.37□□□□□ -1.55
LDB3-206ENST00000477489 MT-CO2P00403 227 aa5.37□□□□□ -1.55
LDB3-206ENST00000477489 APOC3P02656 99 aa5.37□□□□□ -1.55
LDB3-206ENST00000477489 SFTA3P0C7M3 94 aa5.37□□□□□ -1.55
LDB3-206ENST00000477489 RPL29P47914 159 aaKnown RBP5.37□□□□□ -1.55
LDB3-206ENST00000477489 PSMB3P49720 205 aa5.37□□□□□ -1.55
LDB3-206ENST00000477489 UBE2E1P51965 193 aa5.37□□□□□ -1.55
LDB3-206ENST00000477489 CD69Q07108 199 aa5.37□□□□□ -1.55
LDB3-206ENST00000477489 EBI3Q14213 229 aa5.37□□□□□ -1.55
LDB3-206ENST00000477489 PRSS8Q16651 343 aa5.37□□□□□ -1.55
LDB3-206ENST00000477489 TMEM144Q7Z5S9 345 aa5.37□□□□□ -1.55
LDB3-206ENST00000477489 NPBQ8NG41 125 aa5.37□□□□□ -1.55
LDB3-206ENST00000477489 NANPQ8TBE9 248 aa5.37□□□□□ -1.55
LDB3-206ENST00000477489 SFT2D1Q8WV19 159 aa5.37□□□□□ -1.55
LDB3-206ENST00000477489 MISP3Q96FF7 219 aa5.37□□□□□ -1.55
LDB3-206ENST00000477489 RCC1LQ96I51 464 aaKnown RBP5.37□□□□□ -1.55
LDB3-206ENST00000477489 SLC35E1Q96K37 410 aa5.37□□□□□ -1.55
LDB3-206ENST00000477489 RNF2Q99496 336 aa5.37□□□□□ -1.55
LDB3-206ENST00000477489 CCL19Q99731 98 aa5.37□□□□□ -1.55
LDB3-206ENST00000477489 RSG1Q9BU20 258 aa5.37□□□□□ -1.55
LDB3-206ENST00000477489 SCRT1Q9BWW7 348 aa5.37□□□□□ -1.55
LDB3-206ENST00000477489 NKX6-2Q9C056 277 aaPredicted RBP5.37□□□□□ -1.55
LDB3-206ENST00000477489 EIF5A2Q9GZV4 153 aaKnown RBP5.37□□□□□ -1.55
LDB3-206ENST00000477489 MANBALQ9NQG1 85 aa5.37□□□□□ -1.55
LDB3-206ENST00000477489 ARL2-SNX15V9GYD0 113 aa5.37□□□□□ -1.55
LDB3-206ENST00000477489 TNCP24821 2201 aa5.36□□□□□ -1.55
LDB3-206ENST00000477489 OTOGQ6ZRI0 2925 aa5.36□□□□□ -1.55
LDB3-206ENST00000477489 LOC102723971A0A1B0GUV8 181 aa5.36□□□□□ -1.55
LDB3-206ENST00000477489 MAP1LC3B2A6NCE7 125 aa5.36□□□□□ -1.55
LDB3-206ENST00000477489 RRHO14718 337 aa5.36□□□□□ -1.55
LDB3-206ENST00000477489 NDUFA3O95167 84 aa5.36□□□□□ -1.55
LDB3-206ENST00000477489 MOSP00540 346 aa5.36□□□□□ -1.55
LDB3-206ENST00000477489 CA2P00918 260 aa5.36□□□□□ -1.55
LDB3-206ENST00000477489 SNRNP70P08621 437 aaKnown RBP5.36□□□□□ -1.55
LDB3-206ENST00000477489 RNASE2P10153 161 aaKnown RBP5.36□□□□□ -1.55
LDB3-206ENST00000477489 BCL2P10415 239 aa5.36□□□□□ -1.55
LDB3-206ENST00000477489 PAX6P26367 422 aa5.36□□□□□ -1.55
LDB3-206ENST00000477489 CDKN1AP38936 164 aa5.36□□□□□ -1.55
LDB3-206ENST00000477489 RPL27AP46776 148 aaKnown RBP5.36□□□□□ -1.55
LDB3-206ENST00000477489 LMO4P61968 165 aa5.36□□□□□ -1.55
LDB3-206ENST00000477489 SELENOTP62341 195 aa5.36□□□□□ -1.55
LDB3-206ENST00000477489 PNRC1Q12796 327 aaPredicted RBP5.36□□□□□ -1.55
LDB3-206ENST00000477489 PSG5Q15238 335 aa5.36□□□□□ -1.55
LDB3-206ENST00000477489 RHEBQ15382 184 aa5.36□□□□□ -1.55
LDB3-206ENST00000477489 FAM74A3Q4VXF1 159 aa5.36□□□□□ -1.55
LDB3-206ENST00000477489 FFAR4Q5NUL3 377 aa5.36□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms