RNA–Protein interactions for RNA: ENST00000476903.1

CCDC88A-213, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 419 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-213ENST00000476903 Q8N402 240 aa5.16□□□□□ -1.58
CCDC88A-213ENST00000476903 DMBX1Q8NFW5 382 aa5.16□□□□□ -1.58
CCDC88A-213ENST00000476903 OR2K2Q8NGT1 345 aa5.16□□□□□ -1.58
CCDC88A-213ENST00000476903 EEF1AKMT3Q96AZ1 226 aa5.16□□□□□ -1.58
CCDC88A-213ENST00000476903 MOB3AQ96BX8 217 aa5.16□□□□□ -1.58
CCDC88A-213ENST00000476903 CMTM3Q96MX0 182 aa5.16□□□□□ -1.58
CCDC88A-213ENST00000476903 SRSF8Q9BRL6 282 aaKnown RBP5.16□□□□□ -1.58
CCDC88A-213ENST00000476903 ZNF2Q9BSG1 426 aaPredicted RBP5.16□□□□□ -1.58
CCDC88A-213ENST00000476903 PLEKHA2Q9HB19 425 aa5.16□□□□□ -1.58
CCDC88A-213ENST00000476903 COMMD9Q9P000 198 aa5.16□□□□□ -1.58
CCDC88A-213ENST00000476903 COMMD3Q9UBI1 195 aa5.16□□□□□ -1.58
CCDC88A-213ENST00000476903 TRBV7-1A0A0A6YYK4 115 aa5.15□□□□□ -1.59
CCDC88A-213ENST00000476903 PGPEP1LA6NFU8 196 aa5.15□□□□□ -1.59
CCDC88A-213ENST00000476903 MARCH11A6NNE9 402 aa5.15□□□□□ -1.59
CCDC88A-213ENST00000476903 A8MZ25 164 aa5.15□□□□□ -1.59
CCDC88A-213ENST00000476903 PPP5D1E7EU14 171 aa5.15□□□□□ -1.59
CCDC88A-213ENST00000476903 GPR31O00270 319 aa5.15□□□□□ -1.59
CCDC88A-213ENST00000476903 UPK2O00526 184 aa5.15□□□□□ -1.59
CCDC88A-213ENST00000476903 GGCTO75223 188 aaKnown RBP5.15□□□□□ -1.59
CCDC88A-213ENST00000476903 PGLYRP1O75594 196 aaPredicted RBP5.15□□□□□ -1.59
CCDC88A-213ENST00000476903 S1PR2O95136 353 aa5.15□□□□□ -1.59
CCDC88A-213ENST00000476903 IGHV3-23P01764 117 aa5.15□□□□□ -1.59
CCDC88A-213ENST00000476903 APOA1P02647 267 aa5.15□□□□□ -1.59
CCDC88A-213ENST00000476903 RLN1P04808 185 aa5.15□□□□□ -1.59
CCDC88A-213ENST00000476903 REG1AP05451 166 aa5.15□□□□□ -1.59
CCDC88A-213ENST00000476903 S100GP29377 79 aa5.15□□□□□ -1.59
CCDC88A-213ENST00000476903 HRH1P35367 487 aa5.15□□□□□ -1.59
CCDC88A-213ENST00000476903 ARL3P36405 182 aa5.15□□□□□ -1.59
CCDC88A-213ENST00000476903 RORCP51449 518 aa5.15□□□□□ -1.59
CCDC88A-213ENST00000476903 OR2B8PP59922 312 aa5.15□□□□□ -1.59
CCDC88A-213ENST00000476903 VBP1P61758 197 aa5.15□□□□□ -1.59
CCDC88A-213ENST00000476903 TSPAN5P62079 268 aa5.15□□□□□ -1.59
CCDC88A-213ENST00000476903 NCS1P62166 190 aa5.15□□□□□ -1.59
CCDC88A-213ENST00000476903 KLK9Q2XQG4 91 aa5.15□□□□□ -1.59
CCDC88A-213ENST00000476903 THOC7Q6I9Y2 204 aaKnown RBP5.15□□□□□ -1.59
CCDC88A-213ENST00000476903 LPCAT3Q6P1A2 487 aa5.15□□□□□ -1.59
CCDC88A-213ENST00000476903 C19orf35Q6ZS72 473 aa5.15□□□□□ -1.59
CCDC88A-213ENST00000476903 OR6F1Q8NGZ6 308 aa5.15□□□□□ -1.59
CCDC88A-213ENST00000476903 DYNLRB2Q8TF09 96 aa5.15□□□□□ -1.59
CCDC88A-213ENST00000476903 CXorf58Q96LI9 332 aa5.15□□□□□ -1.59
CCDC88A-213ENST00000476903 RCHY1Q96PM5 261 aa5.15□□□□□ -1.59
CCDC88A-213ENST00000476903 TXN2Q99757 166 aa5.15□□□□□ -1.59
CCDC88A-213ENST00000476903 QTRT1Q9BXR0 403 aaKnown RBP5.15□□□□□ -1.59
CCDC88A-213ENST00000476903 COMMD5Q9GZQ3 224 aa5.15□□□□□ -1.59
CCDC88A-213ENST00000476903 SCPEP1Q9HB40 452 aa5.15□□□□□ -1.59
CCDC88A-213ENST00000476903 TMEM140Q9NV12 185 aa5.15□□□□□ -1.59
CCDC88A-213ENST00000476903 THYN1Q9P016 225 aa5.15□□□□□ -1.59
CCDC88A-213ENST00000476903 KLK9Q9UKQ9 250 aa5.15□□□□□ -1.59
CCDC88A-213ENST00000476903 IGLV11-55A0A075B6I3 123 aa5.14□□□□□ -1.59
CCDC88A-213ENST00000476903 TRAV3A0A0B4J244 114 aa5.14□□□□□ -1.59
CCDC88A-213ENST00000476903 IGLC7A0M8Q6 106 aa5.14□□□□□ -1.59
CCDC88A-213ENST00000476903 C2orf70A6NJV1 201 aa5.14□□□□□ -1.59
CCDC88A-213ENST00000476903 C3orf84H3BNL1 204 aa5.14□□□□□ -1.59
CCDC88A-213ENST00000476903 LGALS9O00182 355 aa5.14□□□□□ -1.59
CCDC88A-213ENST00000476903 CYB5BO43169 146 aa5.14□□□□□ -1.59
CCDC88A-213ENST00000476903 NDUFB8O95169 186 aa5.14□□□□□ -1.59
CCDC88A-213ENST00000476903 HLA-AP01891 365 aaKnown RBP5.14□□□□□ -1.59
CCDC88A-213ENST00000476903 MYOD1P15172 320 aa5.14□□□□□ -1.59
CCDC88A-213ENST00000476903 F2RP25116 425 aa5.14□□□□□ -1.59
CCDC88A-213ENST00000476903 HLA-DMAP28067 261 aa5.14□□□□□ -1.59
CCDC88A-213ENST00000476903 RCVRNP35243 200 aa5.14□□□□□ -1.59
CCDC88A-213ENST00000476903 ODF1Q14990 250 aa5.14□□□□□ -1.59
CCDC88A-213ENST00000476903 CD300EQ496F6 205 aaPredicted RBP5.14□□□□□ -1.59
CCDC88A-213ENST00000476903 FAM106AQ4KMX7 169 aa5.14□□□□□ -1.59
CCDC88A-213ENST00000476903 TOR2AQ5JU69 321 aa5.14□□□□□ -1.59
CCDC88A-213ENST00000476903 CLEC19AQ6UXS0 136 aa5.14□□□□□ -1.59
CCDC88A-213ENST00000476903 HSD17B13Q7Z5P4 300 aaPredicted RBP5.14□□□□□ -1.59
CCDC88A-213ENST00000476903 GPHB5Q86YW7 130 aa5.14□□□□□ -1.59
CCDC88A-213ENST00000476903 SNX29P2Q8IUI4 249 aa5.14□□□□□ -1.59
CCDC88A-213ENST00000476903 LAX1Q8IWV1 398 aa5.14□□□□□ -1.59
CCDC88A-213ENST00000476903 OR2C3Q8N628 320 aa5.14□□□□□ -1.59
CCDC88A-213ENST00000476903 OR1L8Q8NGR8 309 aa5.14□□□□□ -1.59
CCDC88A-213ENST00000476903 GPX8Q8TED1 209 aa5.14□□□□□ -1.59
CCDC88A-213ENST00000476903 AP3S1Q92572 193 aa5.14□□□□□ -1.59
CCDC88A-213ENST00000476903 DGCR14Q96DF8 476 aaKnown RBP5.14□□□□□ -1.59
CCDC88A-213ENST00000476903 THAP7Q9BT49 309 aaPredicted RBP5.14□□□□□ -1.59
CCDC88A-213ENST00000476903 SPXQ9BT56 116 aa5.14□□□□□ -1.59
CCDC88A-213ENST00000476903 FXYD6Q9H0Q3 95 aa5.14□□□□□ -1.59
CCDC88A-213ENST00000476903 TUBA4BQ9H853 241 aa5.14□□□□□ -1.59
CCDC88A-213ENST00000476903 TECRQ9NZ01 308 aaKnown RBP5.14□□□□□ -1.59
CCDC88A-213ENST00000476903 TENM3Q9P273 2699 aa5.14□□□□□ -1.59
CCDC88A-213ENST00000476903 KMT2CQ8NEZ4 4911 aaKnown RBP5.13□□□□□ -1.59
CCDC88A-213ENST00000476903 ZNF320A2RRD8 509 aa5.13□□□□□ -1.59
CCDC88A-213ENST00000476903 IZUMO1RA6ND01 250 aa5.13□□□□□ -1.59
CCDC88A-213ENST00000476903 FAM25AB3EWG3 89 aa5.13□□□□□ -1.59
CCDC88A-213ENST00000476903 FAM25CB3EWG5 89 aa5.13□□□□□ -1.59
CCDC88A-213ENST00000476903 FAM25GB3EWG6 89 aa5.13□□□□□ -1.59
CCDC88A-213ENST00000476903 HPGDSO60760 199 aa5.13□□□□□ -1.59
CCDC88A-213ENST00000476903 SNAPC5O75971 98 aa5.13□□□□□ -1.59
CCDC88A-213ENST00000476903 GABARAPO95166 117 aa5.13□□□□□ -1.59
CCDC88A-213ENST00000476903 OR2C1O95371 312 aa5.13□□□□□ -1.59
CCDC88A-213ENST00000476903 KRASP01116 189 aa5.13□□□□□ -1.59
CCDC88A-213ENST00000476903 CLEC3BP05452 202 aa5.13□□□□□ -1.59
CCDC88A-213ENST00000476903 TRAPPC2P0DI81 140 aa5.13□□□□□ -1.59
CCDC88A-213ENST00000476903 TRAPPC2BP0DI82 140 aa5.13□□□□□ -1.59
CCDC88A-213ENST00000476903 SMIM18P0DKX4 95 aa5.13□□□□□ -1.59
CCDC88A-213ENST00000476903 FOLR2P14207 255 aa5.13□□□□□ -1.59
CCDC88A-213ENST00000476903 RPA2P15927 270 aa5.13□□□□□ -1.59
CCDC88A-213ENST00000476903 ELK1P19419 428 aa5.13□□□□□ -1.59
CCDC88A-213ENST00000476903 G6PCP35575 357 aa5.13□□□□□ -1.59
Retrieved 100 of 20,778 RNA–protein pairs in 67.6 ms