RNA–Protein interactions for RNA: ENST00000469852.5

COL9A3-209, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 3

Gene COL9A3, Length 901 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-209ENST00000469852 HOXA1P49639 335 aaPredicted RBP11.5□□□□□ -0.57
COL9A3-209ENST00000469852 RAB9AP51151 201 aa11.5□□□□□ -0.57
COL9A3-209ENST00000469852 IAH1Q2TAA2 248 aaPredicted RBP11.5□□□□□ -0.57
COL9A3-209ENST00000469852 THOC7Q6I9Y2 204 aaKnown RBP11.5□□□□□ -0.57
COL9A3-209ENST00000469852 OR2C3Q8N628 320 aa11.5□□□□□ -0.57
COL9A3-209ENST00000469852 COMMD1Q8N668 190 aa11.5□□□□□ -0.57
COL9A3-209ENST00000469852 ZBTB8BQ8NAP8 495 aaPredicted RBP11.5□□□□□ -0.57
COL9A3-209ENST00000469852 WDR89Q96FK6 387 aaPredicted RBP11.5□□□□□ -0.57
COL9A3-209ENST00000469852 FANCD2OSQ96PS1 177 aa11.5□□□□□ -0.57
COL9A3-209ENST00000469852 MAGT1Q9H0U3 335 aa11.5□□□□□ -0.57
COL9A3-209ENST00000469852 TRRAPQ9Y4A5 3859 aa11.49□□□□□ -0.57
COL9A3-209ENST00000469852 TCRBV4S1A1TA0A5B7 111 aa11.49□□□□□ -0.57
COL9A3-209ENST00000469852 CEBPZOSA8MTT3 80 aa11.49□□□□□ -0.57
COL9A3-209ENST00000469852 GOSR2O14653 212 aa11.49□□□□□ -0.57
COL9A3-209ENST00000469852 TRGV3P03979 118 aa11.49□□□□□ -0.57
COL9A3-209ENST00000469852 TPPP2P59282 170 aa11.49□□□□□ -0.57
COL9A3-209ENST00000469852 KHDC1LQ5JSQ8 128 aa11.49□□□□□ -0.57
COL9A3-209ENST00000469852 P2RX4Q99571 388 aa11.49□□□□□ -0.57
COL9A3-209ENST00000469852 GNB4Q9HAV0 340 aa11.49□□□□□ -0.57
COL9A3-209ENST00000469852 IGLV11-55A0A075B6I3 123 aa11.48□□□□□ -0.57
COL9A3-209ENST00000469852 TRBV9A0A0B4J1U6 114 aa11.48□□□□□ -0.57
COL9A3-209ENST00000469852 C5orf51A6NDU8 294 aa11.48□□□□□ -0.57
COL9A3-209ENST00000469852 INS-IGF2F8WCM5 200 aa11.48□□□□□ -0.57
COL9A3-209ENST00000469852 H3BUA1 57 aa11.48□□□□□ -0.57
COL9A3-209ENST00000469852 SSNA1O43805 119 aa11.48□□□□□ -0.57
COL9A3-209ENST00000469852 OR2J3O76001 311 aa11.48□□□□□ -0.57
COL9A3-209ENST00000469852 RPL23AP62750 156 aaKnown RBP11.48□□□□□ -0.57
COL9A3-209ENST00000469852 NSUN5P1Q3KNT7 163 aa11.48□□□□□ -0.57
COL9A3-209ENST00000469852 TMEM65Q6PI78 240 aa11.48□□□□□ -0.57
COL9A3-209ENST00000469852 HSD17B13Q7Z5P4 300 aaPredicted RBP11.48□□□□□ -0.57
COL9A3-209ENST00000469852 ZNF491Q8N8L2 437 aa11.48□□□□□ -0.57
COL9A3-209ENST00000469852 TMEM170AQ8WVE7 144 aa11.48□□□□□ -0.57
COL9A3-209ENST00000469852 GSKIPQ9P0R6 139 aa11.48□□□□□ -0.57
COL9A3-209ENST00000469852 F11RQ9Y624 299 aaKnown RBP11.48□□□□□ -0.57
COL9A3-209ENST00000469852 NDUFB8O95169 186 aa11.47□□□□□ -0.57
COL9A3-209ENST00000469852 BRI3O95415 125 aa11.47□□□□□ -0.57
COL9A3-209ENST00000469852 IGHV3-11P01762 117 aa11.47□□□□□ -0.57
COL9A3-209ENST00000469852 RNASE2P10153 161 aaKnown RBP11.47□□□□□ -0.57
COL9A3-209ENST00000469852 IAPPP10997 89 aa11.47□□□□□ -0.57
COL9A3-209ENST00000469852 RHOGP84095 191 aa11.47□□□□□ -0.57
COL9A3-209ENST00000469852 ID3Q02535 119 aa11.47□□□□□ -0.57
COL9A3-209ENST00000469852 IL15RAQ13261 267 aa11.47□□□□□ -0.57
COL9A3-209ENST00000469852 KLK9Q2XQG4 91 aa11.47□□□□□ -0.57
COL9A3-209ENST00000469852 BSXQ3C1V8 233 aa11.47□□□□□ -0.57
COL9A3-209ENST00000469852 SHISA2Q6UWI4 295 aa11.47□□□□□ -0.57
COL9A3-209ENST00000469852 DTD1Q8TEA8 209 aa11.47□□□□□ -0.57
COL9A3-209ENST00000469852 OR5B12Q96R08 314 aa11.47□□□□□ -0.57
COL9A3-209ENST00000469852 SLA2Q9H6Q3 261 aa11.47□□□□□ -0.57
COL9A3-209ENST00000469852 HEYLQ9NQ87 328 aaPredicted RBP11.47□□□□□ -0.57
COL9A3-209ENST00000469852 KLK9Q9UKQ9 250 aa11.47□□□□□ -0.57
COL9A3-209ENST00000469852 TSSC4Q9Y5U2 329 aaPredicted RBP11.47□□□□□ -0.57
COL9A3-209ENST00000469852 S4R3C0 116 aa11.47□□□□□ -0.57
COL9A3-209ENST00000469852 VWFP04275 2813 aa11.47□□□□□ -0.57
COL9A3-209ENST00000469852 CMYA5Q8N3K9 4069 aa11.46□□□□□ -0.57
COL9A3-209ENST00000469852 FAM90A26D6RGX4 464 aa11.46□□□□□ -0.57
COL9A3-209ENST00000469852 SCGB1D2O95969 90 aa11.46□□□□□ -0.57
COL9A3-209ENST00000469852 MBPP02686 304 aaPredicted RBP11.46□□□□□ -0.57
COL9A3-209ENST00000469852 DEFA4P12838 97 aa11.46□□□□□ -0.57
COL9A3-209ENST00000469852 CXCL3P19876 107 aa11.46□□□□□ -0.57
COL9A3-209ENST00000469852 NKX2-1P43699 371 aaPredicted RBP11.46□□□□□ -0.57
COL9A3-209ENST00000469852 H2BFSP57053 126 aa11.46□□□□□ -0.57
COL9A3-209ENST00000469852 POLR2GP62487 172 aaKnown RBP eCLIP11.46□□□□□ -0.57
COL9A3-209ENST00000469852 ERHP84090 104 aaKnown RBP11.46□□□□□ -0.57
COL9A3-209ENST00000469852 GSG1LQ6UXU4 331 aa11.46□□□□□ -0.57
COL9A3-209ENST00000469852 NDUFA11Q86Y39 141 aa11.46□□□□□ -0.57
COL9A3-209ENST00000469852 ZNF114Q8NC26 417 aa11.46□□□□□ -0.57
COL9A3-209ENST00000469852 C2orf50Q96LR7 162 aa11.46□□□□□ -0.57
COL9A3-209ENST00000469852 ENY2Q9NPA8 101 aa11.46□□□□□ -0.57
COL9A3-209ENST00000469852 MGAT4CQ9UBM8 478 aa11.46□□□□□ -0.57
COL9A3-209ENST00000469852 IGHV3-21A0A0B4J1V1 117 aa11.45□□□□□ -0.58
COL9A3-209ENST00000469852 MFSD2BA6NFX1 497 aa11.45□□□□□ -0.58
COL9A3-209ENST00000469852 SYNGR2O43760 224 aa11.45□□□□□ -0.58
COL9A3-209ENST00000469852 TMEM50AO95807 157 aa11.45□□□□□ -0.58
COL9A3-209ENST00000469852 CDX1P47902 265 aaPredicted RBP11.45□□□□□ -0.58
COL9A3-209ENST00000469852 FCN2Q15485 313 aa11.45□□□□□ -0.58
COL9A3-209ENST00000469852 DEFB136Q30KP8 78 aa11.45□□□□□ -0.58
COL9A3-209ENST00000469852 SLC25A24Q6NUK1 477 aa11.45□□□□□ -0.58
COL9A3-209ENST00000469852 C8orf86Q6ZUL3 223 aa11.45□□□□□ -0.58
COL9A3-209ENST00000469852 KLHL30-AS1Q8NEE0 82 aa11.45□□□□□ -0.58
COL9A3-209ENST00000469852 OR11H7Q8NGC8 314 aa11.45□□□□□ -0.58
COL9A3-209ENST00000469852 OR1P1Q8NH06 330 aa11.45□□□□□ -0.58
COL9A3-209ENST00000469852 UBE2E2Q96LR5 201 aa11.45□□□□□ -0.58
COL9A3-209ENST00000469852 DUX3Q96PT4 197 aa11.45□□□□□ -0.58
COL9A3-209ENST00000469852 ZFP57Q9NU63 452 aa11.45□□□□□ -0.58
COL9A3-209ENST00000469852 FBXL7Q9UJT9 491 aa11.45□□□□□ -0.58
COL9A3-209ENST00000469852 RCL1Q9Y2P8 373 aaKnown RBP11.45□□□□□ -0.58
COL9A3-209ENST00000469852 I3L521 148 aa11.44□□□□□ -0.58
COL9A3-209ENST00000469852 WRBO00258 174 aa11.44□□□□□ -0.58
COL9A3-209ENST00000469852 SSSCA1O60232 199 aa11.44□□□□□ -0.58
COL9A3-209ENST00000469852 IGHV3-23P01764 117 aa11.44□□□□□ -0.58
COL9A3-209ENST00000469852 SNCAP37840 140 aa11.44□□□□□ -0.58
COL9A3-209ENST00000469852 C15orf32Q32M92 178 aa11.44□□□□□ -0.58
COL9A3-209ENST00000469852 PVRIGQ6DKI7 326 aa11.44□□□□□ -0.58
COL9A3-209ENST00000469852 MRPL41Q8IXM3 137 aaKnown RBP11.44□□□□□ -0.58
COL9A3-209ENST00000469852 NECAP1Q8NC96 275 aa11.44□□□□□ -0.58
COL9A3-209ENST00000469852 FAM223BA6NKX1 122 aa11.43□□□□□ -0.58
COL9A3-209ENST00000469852 NUDT19A8MXV4 375 aa11.43□□□□□ -0.58
COL9A3-209ENST00000469852 K7EIM0 57 aa11.43□□□□□ -0.58
COL9A3-209ENST00000469852 K7EPK0 472 aa11.43□□□□□ -0.58
COL9A3-209ENST00000469852 TSPAN15O95858 294 aa11.43□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms