RNA–Protein interactions for RNA: ENST00000468545.1

TMEM39A-204, Transcript of transmembrane protein 39A, humanhuman

TSL 4

Gene TMEM39A, Length 575 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM39A-204ENST00000468545 LSM10Q969L4 123 aaKnown RBP3.24□□□□□ -1.89
TMEM39A-204ENST00000468545 C2orf50Q96LR7 162 aa3.24□□□□□ -1.89
TMEM39A-204ENST00000468545 DUX5Q96PT3 197 aa3.24□□□□□ -1.89
TMEM39A-204ENST00000468545 OR2A7Q96R45 310 aa3.24□□□□□ -1.89
TMEM39A-204ENST00000468545 TSNAXQ99598 290 aaKnown RBP3.24□□□□□ -1.89
TMEM39A-204ENST00000468545 RASL11BQ9BPW5 248 aa3.24□□□□□ -1.89
TMEM39A-204ENST00000468545 ZNF436Q9C0F3 470 aaPredicted RBP3.24□□□□□ -1.89
TMEM39A-204ENST00000468545 FBXL15Q9H469 300 aa3.24□□□□□ -1.89
TMEM39A-204ENST00000468545 RANGRFQ9HD47 186 aaPredicted RBP3.24□□□□□ -1.89
TMEM39A-204ENST00000468545 RAB18Q9NP72 206 aa3.24□□□□□ -1.89
TMEM39A-204ENST00000468545 COMMD9Q9P000 198 aa3.24□□□□□ -1.89
TMEM39A-204ENST00000468545 KIAA1456Q9P272 454 aa3.24□□□□□ -1.89
TMEM39A-204ENST00000468545 PEMTQ9UBM1 199 aa3.24□□□□□ -1.89
TMEM39A-204ENST00000468545 METTL1Q9UBP6 276 aaKnown RBP3.24□□□□□ -1.89
TMEM39A-204ENST00000468545 CACNG5Q9UF02 275 aa3.24□□□□□ -1.89
TMEM39A-204ENST00000468545 PAIP2BQ9ULR5 123 aaKnown RBP3.24□□□□□ -1.89
TMEM39A-204ENST00000468545 RCL1Q9Y2P8 373 aaKnown RBP3.24□□□□□ -1.89
TMEM39A-204ENST00000468545 TMED3Q9Y3Q3 217 aa3.24□□□□□ -1.89
TMEM39A-204ENST00000468545 OR51B2Q9Y5P1 312 aa3.24□□□□□ -1.89
TMEM39A-204ENST00000468545 MMP24Q9Y5R2 645 aa3.24□□□□□ -1.89
TMEM39A-204ENST00000468545 WNK2Q9Y3S1 2297 aa3.24□□□□□ -1.89
TMEM39A-204ENST00000468545 PDZD2O15018 2839 aa3.24□□□□□ -1.89
TMEM39A-204ENST00000468545 TEX50A0A1B0GTY4 177 aa3.23□□□□□ -1.89
TMEM39A-204ENST00000468545 A0A1B0GU03 582 aa3.23□□□□□ -1.89
TMEM39A-204ENST00000468545 DUXBA0A1W2PPF3 345 aa3.23□□□□□ -1.89
TMEM39A-204ENST00000468545 BTBD17A6NE02 478 aa3.23□□□□□ -1.89
TMEM39A-204ENST00000468545 CBY3A6NI87 242 aa3.23□□□□□ -1.89
TMEM39A-204ENST00000468545 CEBPZOSA8MTT3 80 aa3.23□□□□□ -1.89
TMEM39A-204ENST00000468545 INAFM1C9JVW0 142 aa3.23□□□□□ -1.89
TMEM39A-204ENST00000468545 L7N2F9 121 aa3.23□□□□□ -1.89
TMEM39A-204ENST00000468545 WRBO00258 174 aa3.23□□□□□ -1.89
TMEM39A-204ENST00000468545 FCN1O00602 326 aa3.23□□□□□ -1.89
TMEM39A-204ENST00000468545 NBR2O15453 112 aa3.23□□□□□ -1.89
TMEM39A-204ENST00000468545 RBFOX2O43251 390 aaKnown RBP eCLIP3.23□□□□□ -1.89
TMEM39A-204ENST00000468545 KCNAB3O43448 404 aa3.23□□□□□ -1.89
TMEM39A-204ENST00000468545 CHST1O43916 411 aa3.23□□□□□ -1.89
TMEM39A-204ENST00000468545 KBTBD11O94819 623 aa3.23□□□□□ -1.89
TMEM39A-204ENST00000468545 TACC2O95359 2948 aa3.23□□□□□ -1.89
TMEM39A-204ENST00000468545 IGLV2-23P01705 113 aa3.23□□□□□ -1.89
TMEM39A-204ENST00000468545 IGHV4-59P01825 116 aa3.23□□□□□ -1.89
TMEM39A-204ENST00000468545 RLN2P04090 185 aa3.23□□□□□ -1.89
TMEM39A-204ENST00000468545 IGKV2-30P06310 120 aa3.23□□□□□ -1.89
TMEM39A-204ENST00000468545 APELAP0DMC3 54 aa3.23□□□□□ -1.89
TMEM39A-204ENST00000468545 SRD5A1P18405 259 aa3.23□□□□□ -1.89
TMEM39A-204ENST00000468545 NKX2-1P43699 371 aaPredicted RBP3.23□□□□□ -1.89
TMEM39A-204ENST00000468545 H2BFSP57053 126 aa3.23□□□□□ -1.89
TMEM39A-204ENST00000468545 BPIFB3P59826 476 aa3.23□□□□□ -1.89
TMEM39A-204ENST00000468545 UBE2KP61086 200 aa3.23□□□□□ -1.89
TMEM39A-204ENST00000468545 POLR2GP62487 172 aaKnown RBP eCLIP3.23□□□□□ -1.89
TMEM39A-204ENST00000468545 PJVKQ0ZLH3 352 aa3.23□□□□□ -1.89
TMEM39A-204ENST00000468545 SMCO1Q147U7 214 aa3.23□□□□□ -1.89
TMEM39A-204ENST00000468545 Q5BKY6 102 aa3.23□□□□□ -1.89
TMEM39A-204ENST00000468545 CXorf66Q5JRM2 361 aaPredicted RBP3.23□□□□□ -1.89
TMEM39A-204ENST00000468545 SERTAD4-AS1Q5TG53 156 aa3.23□□□□□ -1.89
TMEM39A-204ENST00000468545 DHRS7BQ6IAN0 325 aaPredicted RBP3.23□□□□□ -1.89
TMEM39A-204ENST00000468545 TEX29Q8N6K0 151 aa3.23□□□□□ -1.89
TMEM39A-204ENST00000468545 LRTM2Q8N967 370 aa3.23□□□□□ -1.89
TMEM39A-204ENST00000468545 TEX45Q8NA69 505 aa3.23□□□□□ -1.89
TMEM39A-204ENST00000468545 OR5M8Q8NGP6 311 aa3.23□□□□□ -1.89
TMEM39A-204ENST00000468545 OR2T35Q8NGX2 323 aa3.23□□□□□ -1.89
TMEM39A-204ENST00000468545 PIFOQ8TCI5 191 aa3.23□□□□□ -1.89
TMEM39A-204ENST00000468545 ST6GAL2Q96JF0 529 aa3.23□□□□□ -1.89
TMEM39A-204ENST00000468545 SPIN2AQ99865 258 aa3.23□□□□□ -1.89
TMEM39A-204ENST00000468545 RNF5Q99942 180 aa3.23□□□□□ -1.89
TMEM39A-204ENST00000468545 SPIN2BQ9BPZ2 258 aa3.23□□□□□ -1.89
TMEM39A-204ENST00000468545 SLC25A33Q9BSK2 321 aa3.23□□□□□ -1.89
TMEM39A-204ENST00000468545 ENY2Q9NPA8 101 aa3.23□□□□□ -1.89
TMEM39A-204ENST00000468545 ZC4H2Q9NQZ6 224 aa3.23□□□□□ -1.89
TMEM39A-204ENST00000468545 CTNNBIP1Q9NSA3 81 aaPredicted RBP3.23□□□□□ -1.89
TMEM39A-204ENST00000468545 C1RLQ9NZP8 487 aa3.23□□□□□ -1.89
TMEM39A-204ENST00000468545 ABCA2Q9BZC7 2435 aa3.23□□□□□ -1.89
TMEM39A-204ENST00000468545 CSMD1Q96PZ7 3565 aa3.23□□□□□ -1.89
TMEM39A-204ENST00000468545 AKAP9Q99996 3911 aa3.22□□□□□ -1.89
TMEM39A-204ENST00000468545 UNC79Q9P2D8 2635 aa3.22□□□□□ -1.89
TMEM39A-204ENST00000468545 FXYD6-FXYD2A0A087WZ82 144 aa3.22□□□□□ -1.89
TMEM39A-204ENST00000468545 PIGBOS1A0A0B4J2F0 54 aa3.22□□□□□ -1.89
TMEM39A-204ENST00000468545 A6NDX4 124 aa3.22□□□□□ -1.89
TMEM39A-204ENST00000468545 FAM24AA6NFZ4 105 aa3.22□□□□□ -1.89
TMEM39A-204ENST00000468545 MSGN1A6NI15 193 aa3.22□□□□□ -1.89
TMEM39A-204ENST00000468545 J3KRW8 73 aa3.22□□□□□ -1.89
TMEM39A-204ENST00000468545 K7EPK0 472 aa3.22□□□□□ -1.89
TMEM39A-204ENST00000468545 ST8SIA3O43173 380 aa3.22□□□□□ -1.89
TMEM39A-204ENST00000468545 SSSCA1O60232 199 aa3.22□□□□□ -1.89
TMEM39A-204ENST00000468545 CA2P00918 260 aa3.22□□□□□ -1.89
TMEM39A-204ENST00000468545 REG1AP05451 166 aa3.22□□□□□ -1.89
TMEM39A-204ENST00000468545 CRYGBP07316 175 aa3.22□□□□□ -1.89
TMEM39A-204ENST00000468545 GIPP09681 153 aaPredicted RBP3.22□□□□□ -1.89
TMEM39A-204ENST00000468545 TRAPPC2P0DI81 140 aa3.22□□□□□ -1.89
TMEM39A-204ENST00000468545 TRAPPC2BP0DI82 140 aa3.22□□□□□ -1.89
TMEM39A-204ENST00000468545 HLA-GP17693 338 aa3.22□□□□□ -1.89
TMEM39A-204ENST00000468545 PSMB6P28072 239 aa3.22□□□□□ -1.89
TMEM39A-204ENST00000468545 NUP62P37198 522 aaPredicted RBP3.22□□□□□ -1.89
TMEM39A-204ENST00000468545 IER3P46695 156 aa3.22□□□□□ -1.89
TMEM39A-204ENST00000468545 RPL27AP46776 148 aaKnown RBP3.22□□□□□ -1.89
TMEM39A-204ENST00000468545 HOXA1P49639 335 aaPredicted RBP3.22□□□□□ -1.89
TMEM39A-204ENST00000468545 NKX2-5P52952 324 aaPredicted RBP3.22□□□□□ -1.89
TMEM39A-204ENST00000468545 AP2S1P53680 142 aaPredicted RBP3.22□□□□□ -1.89
TMEM39A-204ENST00000468545 HSPE1P61604 102 aaKnown RBP3.22□□□□□ -1.89
TMEM39A-204ENST00000468545 RPL8P62917 257 aaKnown RBP3.22□□□□□ -1.89
TMEM39A-204ENST00000468545 CYCSP99999 105 aaKnown RBP3.22□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms