RNA–Protein interactions for RNA: ENST00000466048.6

USP54-210, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 5

Gene USP54, Length 4,674 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-210ENST00000466048 COL8A1P27658 744 aa6.43□□□□□ -1.38
USP54-210ENST00000466048 WNT5AP41221 380 aa6.43□□□□□ -1.38
USP54-210ENST00000466048 CEBPDP49716 269 aaPredicted RBP6.43□□□□□ -1.38
USP54-210ENST00000466048 FOXG1P55316 489 aaPredicted RBP6.43□□□□□ -1.38
USP54-210ENST00000466048 MEF2CQ06413 473 aaPredicted RBP6.43□□□□□ -1.38
USP54-210ENST00000466048 PIGYQ3MUY2 71 aa6.43□□□□□ -1.38
USP54-210ENST00000466048 PQLC2Q6ZP29 291 aa6.43□□□□□ -1.38
USP54-210ENST00000466048 MYOZ3Q8TDC0 251 aa6.43□□□□□ -1.38
USP54-210ENST00000466048 NEUROG1Q92886 237 aa6.43□□□□□ -1.38
USP54-210ENST00000466048 HIST1H2BLQ99880 126 aa6.43□□□□□ -1.38
USP54-210ENST00000466048 JKAMPQ9P055 326 aa6.43□□□□□ -1.38
USP54-210ENST00000466048 ICE1Q9Y2F5 2266 aa6.43□□□□□ -1.38
USP54-210ENST00000466048 GNB1P62873 340 aa6.43□□□□□ -1.38
USP54-210ENST00000466048 COL10A1Q03692 680 aa6.43□□□□□ -1.38
USP54-210ENST00000466048 PSG5Q15238 335 aa6.43□□□□□ -1.38
USP54-210ENST00000466048 MBNL2Q5VZF2 373 aaKnown RBP6.43□□□□□ -1.38
USP54-210ENST00000466048 ACSM6Q6P461 480 aa6.43□□□□□ -1.38
USP54-210ENST00000466048 OR2T6Q8NHC8 308 aa6.43□□□□□ -1.38
USP54-210ENST00000466048 UBALD1Q8TB05 177 aa6.43□□□□□ -1.38
USP54-210ENST00000466048 TAF15Q92804 592 aaKnown RBP eCLIP6.43□□□□□ -1.38
USP54-210ENST00000466048 SPTBN5Q9NRC6 3674 aaKnown RBP6.43□□□□□ -1.38
USP54-210ENST00000466048 NCOA6Q14686 2063 aaPredicted RBP6.43□□□□□ -1.38
USP54-210ENST00000466048 PTPRQQ9UMZ3 2332 aa6.43□□□□□ -1.38
USP54-210ENST00000466048 TMEM262E9PQX1 116 aa6.43□□□□□ -1.38
USP54-210ENST00000466048 C1QL1O75973 258 aa6.43□□□□□ -1.38
USP54-210ENST00000466048 CD5P06127 495 aa6.43□□□□□ -1.38
USP54-210ENST00000466048 SMIM17P0DL12 118 aa6.43□□□□□ -1.38
USP54-210ENST00000466048 SEC11AP67812 179 aa6.43□□□□□ -1.38
USP54-210ENST00000466048 RNF144BQ7Z419 303 aa6.43□□□□□ -1.38
USP54-210ENST00000466048 RTN4RL2Q86UN3 420 aa6.43□□□□□ -1.38
USP54-210ENST00000466048 OR4S2Q8NH73 311 aa6.43□□□□□ -1.38
USP54-210ENST00000466048 Q8WTZ3 238 aa6.43□□□□□ -1.38
USP54-210ENST00000466048 DERL1Q9BUN8 251 aa6.43□□□□□ -1.38
USP54-210ENST00000466048 TRBV6-6A0A0A6YYG2 114 aa6.43□□□□□ -1.38
USP54-210ENST00000466048 PRB1P04280 392 aa6.43□□□□□ -1.38
USP54-210ENST00000466048 MRPS11P82912 194 aaKnown RBP6.43□□□□□ -1.38
USP54-210ENST00000466048 C2orf68Q2NKX9 166 aa6.43□□□□□ -1.38
USP54-210ENST00000466048 LYG1Q8N1E2 194 aa6.43□□□□□ -1.38
USP54-210ENST00000466048 GAPTQ8N292 157 aa6.43□□□□□ -1.38
USP54-210ENST00000466048 OR10AG1Q8NH19 301 aa6.43□□□□□ -1.38
USP54-210ENST00000466048 OR1L1Q8NH94 360 aa6.43□□□□□ -1.38
USP54-210ENST00000466048 RASL11BQ9BPW5 248 aa6.43□□□□□ -1.38
USP54-210ENST00000466048 SDF2L1Q9HCN8 221 aa6.43□□□□□ -1.38
USP54-210ENST00000466048 IGKV1-12A0A0C4DH73 117 aa6.42□□□□□ -1.38
USP54-210ENST00000466048 NDUFS6O75380 124 aaKnown RBP6.42□□□□□ -1.38
USP54-210ENST00000466048 NDUFB4O95168 129 aa6.42□□□□□ -1.38
USP54-210ENST00000466048 IGKV1D-12P01611 117 aa6.42□□□□□ -1.38
USP54-210ENST00000466048 IGKV3-15P01624 115 aa6.42□□□□□ -1.38
USP54-210ENST00000466048 MPV17P39210 176 aa6.42□□□□□ -1.38
USP54-210ENST00000466048 CEACAM6P40199 344 aa6.42□□□□□ -1.38
USP54-210ENST00000466048 SLC35B1P78383 322 aa6.42□□□□□ -1.38
USP54-210ENST00000466048 GAGE1Q13065 139 aa6.42□□□□□ -1.38
USP54-210ENST00000466048 TWIST1Q15672 202 aa6.42□□□□□ -1.38
USP54-210ENST00000466048 MAJINQ3KP22 176 aa6.42□□□□□ -1.38
USP54-210ENST00000466048 IBA57Q5T440 356 aaKnown RBP6.42□□□□□ -1.38
USP54-210ENST00000466048 TEPPQ6URK8 271 aa6.42□□□□□ -1.38
USP54-210ENST00000466048 CALHM1Q8IU99 346 aa6.42□□□□□ -1.38
USP54-210ENST00000466048 OR4P4Q8NGL7 312 aa6.42□□□□□ -1.38
USP54-210ENST00000466048 OR4X1Q8NH49 305 aa6.42□□□□□ -1.38
USP54-210ENST00000466048 C5orf66Q9H5L9 145 aa6.42□□□□□ -1.38
USP54-210ENST00000466048 BEX4Q9NWD9 120 aaPredicted RBP6.42□□□□□ -1.38
USP54-210ENST00000466048 MYO7BQ6PIF6 2116 aa6.42□□□□□ -1.38
USP54-210ENST00000466048 NOTCH2Q04721 2471 aa6.42□□□□□ -1.38
USP54-210ENST00000466048 TRAV30A0A087WSZ9 112 aa6.42□□□□□ -1.38
USP54-210ENST00000466048 A6NNC1 897 aa6.42□□□□□ -1.38
USP54-210ENST00000466048 CSN3P07498 182 aa6.42□□□□□ -1.38
USP54-210ENST00000466048 FAM106CPP0CH98 169 aa6.42□□□□□ -1.38
USP54-210ENST00000466048 F2RP25116 425 aa6.42□□□□□ -1.38
USP54-210ENST00000466048 LDLRAD2Q5SZI1 272 aa6.42□□□□□ -1.38
USP54-210ENST00000466048 CRIP3Q6Q6R5 217 aa6.42□□□□□ -1.38
USP54-210ENST00000466048 MRGPRDQ8TDS7 321 aa6.42□□□□□ -1.38
USP54-210ENST00000466048 C19orf24Q9BVV8 132 aa6.42□□□□□ -1.38
USP54-210ENST00000466048 MED12Q93074 2177 aa6.42□□□□□ -1.38
USP54-210ENST00000466048 PTPRBP23467 1997 aa6.42□□□□□ -1.38
USP54-210ENST00000466048 TRAV14DV4A0A0A6YYC5 116 aa6.42□□□□□ -1.38
USP54-210ENST00000466048 IGHV1-18A0A0C4DH31 117 aa6.42□□□□□ -1.38
USP54-210ENST00000466048 ANOS1P23352 680 aa6.42□□□□□ -1.38
USP54-210ENST00000466048 C5orf17Q8NAS9 161 aa6.42□□□□□ -1.38
USP54-210ENST00000466048 OR8A1Q8NGG7 326 aa6.42□□□□□ -1.38
USP54-210ENST00000466048 MISP3Q96FF7 219 aa6.42□□□□□ -1.38
USP54-210ENST00000466048 HSD17B10Q99714 261 aaKnown RBP6.42□□□□□ -1.38
USP54-210ENST00000466048 YAE1D1Q9NRH1 226 aa6.42□□□□□ -1.38
USP54-210ENST00000466048 PRR13Q9NZ81 148 aa6.42□□□□□ -1.38
USP54-210ENST00000466048 INSIG2Q9Y5U4 225 aa6.42□□□□□ -1.38
USP54-210ENST00000466048 SOX21Q9Y651 276 aaPredicted RBP6.42□□□□□ -1.38
USP54-210ENST00000466048 SPCS1Q9Y6A9 102 aa6.42□□□□□ -1.38
USP54-210ENST00000466048 SPTBN1Q01082 2364 aaKnown RBP6.42□□□□□ -1.38
USP54-210ENST00000466048 XIRP2A4UGR9 3374 aa6.42□□□□□ -1.38
USP54-210ENST00000466048 PPIAL4CA0A0B4J2A2 164 aa6.41□□□□□ -1.38
USP54-210ENST00000466048 PPIAL4GP0DN37 164 aa6.41□□□□□ -1.38
USP54-210ENST00000466048 GATA3P23771 443 aa6.41□□□□□ -1.38
USP54-210ENST00000466048 SRIP30626 198 aa6.41□□□□□ -1.38
USP54-210ENST00000466048 NMUP48645 174 aa6.41□□□□□ -1.38
USP54-210ENST00000466048 DLX1P56177 255 aa6.41□□□□□ -1.38
USP54-210ENST00000466048 RUNX1Q01196 453 aa6.41□□□□□ -1.38
USP54-210ENST00000466048 FOXF2Q12947 444 aa6.41□□□□□ -1.38
USP54-210ENST00000466048 Q5PR19 223 aa6.41□□□□□ -1.38
USP54-210ENST00000466048 OR8I2Q8N0Y5 310 aa6.41□□□□□ -1.38
USP54-210ENST00000466048 NPVFQ9HCQ7 196 aa6.41□□□□□ -1.38
USP54-210ENST00000466048 UBE2V1Q13404 147 aa6.41□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 42.7 ms