RNA–Protein interactions for RNA: ENST00000373720.3

SNRNP40-202, Transcript of small nuclear ribonucleoprotein U5 subunit 40, humanhuman

TSL 1 (best) BASIC

Gene SNRNP40, Length 1,087 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNRNP40-202ENST00000373720 C11orf52Q96A22 123 aa7.07□□□□□ -1.28
SNRNP40-202ENST00000373720 RPEQ96AT9 228 aa7.07□□□□□ -1.28
SNRNP40-202ENST00000373720 MGST2Q99735 147 aa7.07□□□□□ -1.28
SNRNP40-202ENST00000373720 MRPL20Q9BYC9 149 aaKnown RBP7.07□□□□□ -1.28
SNRNP40-202ENST00000373720 DPM3Q9P2X0 92 aa7.07□□□□□ -1.28
SNRNP40-202ENST00000373720 METTL1Q9UBP6 276 aaKnown RBP7.07□□□□□ -1.28
SNRNP40-202ENST00000373720 CTSZQ9UBR2 303 aa7.07□□□□□ -1.28
SNRNP40-202ENST00000373720 ARID1AO14497 2285 aa7.07□□□□□ -1.28
SNRNP40-202ENST00000373720 DSCAMO60469 2012 aa7.06□□□□□ -1.28
SNRNP40-202ENST00000373720 APC2O95996 2303 aa7.06□□□□□ -1.28
SNRNP40-202ENST00000373720 POLEQ07864 2286 aa7.06□□□□□ -1.28
SNRNP40-202ENST00000373720 MMP23AO75900 390 aa7.06□□□□□ -1.28
SNRNP40-202ENST00000373720 IGKV1D-33P01593 117 aa7.06□□□□□ -1.28
SNRNP40-202ENST00000373720 IGKV1-33P01594 117 aa7.06□□□□□ -1.28
SNRNP40-202ENST00000373720 OR5G3P0C626 314 aa7.06□□□□□ -1.28
SNRNP40-202ENST00000373720 CCL3L1P16619 93 aa7.06□□□□□ -1.28
SNRNP40-202ENST00000373720 HTR1DP28221 377 aa7.06□□□□□ -1.28
SNRNP40-202ENST00000373720 FOXL1Q12952 345 aa7.06□□□□□ -1.28
SNRNP40-202ENST00000373720 PRSS8Q16651 343 aa7.06□□□□□ -1.28
SNRNP40-202ENST00000373720 ARSJQ5FYB0 599 aaPredicted RBP7.06□□□□□ -1.28
SNRNP40-202ENST00000373720 LYPD2Q6UXB3 125 aa7.06□□□□□ -1.28
SNRNP40-202ENST00000373720 C1orf229Q6ZS94 237 aaPredicted RBP7.06□□□□□ -1.28
SNRNP40-202ENST00000373720 Q8N3U1 123 aa7.06□□□□□ -1.28
SNRNP40-202ENST00000373720 TMEM116Q8NCL8 245 aa7.06□□□□□ -1.28
SNRNP40-202ENST00000373720 LINC01560Q8TB33 94 aa7.06□□□□□ -1.28
SNRNP40-202ENST00000373720 YPEL4Q96NS1 127 aa7.06□□□□□ -1.28
SNRNP40-202ENST00000373720 RBM14Q96PK6 669 aaKnown RBP7.06□□□□□ -1.28
SNRNP40-202ENST00000373720 PYGO2Q9BRQ0 406 aa7.06□□□□□ -1.28
SNRNP40-202ENST00000373720 VSIRQ9H7M9 311 aa7.06□□□□□ -1.28
SNRNP40-202ENST00000373720 TBL2Q9Y4P3 447 aaKnown RBP7.06□□□□□ -1.28
SNRNP40-202ENST00000373720 SVILO95425 2214 aa7.06□□□□□ -1.28
SNRNP40-202ENST00000373720 ANKRD11Q6UB99 2663 aaPredicted RBP7.06□□□□□ -1.28
SNRNP40-202ENST00000373720 LOC105371242A0A075B767 164 aa7.05□□□□□ -1.28
SNRNP40-202ENST00000373720 TRAV30A0A087WSZ9 112 aa7.05□□□□□ -1.28
SNRNP40-202ENST00000373720 TRAV3A0A0B4J244 114 aa7.05□□□□□ -1.28
SNRNP40-202ENST00000373720 IGHV1-3A0A0C4DH29 117 aa7.05□□□□□ -1.28
SNRNP40-202ENST00000373720 SRRM4A7MD48 611 aaKnown RBP7.05□□□□□ -1.28
SNRNP40-202ENST00000373720 LY6LH3BQJ8 138 aa7.05□□□□□ -1.28
SNRNP40-202ENST00000373720 H7BYZ3 331 aa7.05□□□□□ -1.28
SNRNP40-202ENST00000373720 UBE2CO00762 179 aa7.05□□□□□ -1.28
SNRNP40-202ENST00000373720 ENSAO43768 121 aaKnown RBP7.05□□□□□ -1.28
SNRNP40-202ENST00000373720 YIF1AO95070 293 aa7.05□□□□□ -1.28
SNRNP40-202ENST00000373720 IGLV2-23P01705 113 aa7.05□□□□□ -1.28
SNRNP40-202ENST00000373720 CRYGCP07315 174 aa7.05□□□□□ -1.28
SNRNP40-202ENST00000373720 CRYGBP07316 175 aa7.05□□□□□ -1.28
SNRNP40-202ENST00000373720 C8orf88P0DMB2 117 aa7.05□□□□□ -1.28
SNRNP40-202ENST00000373720 RPL27AP46776 148 aaKnown RBP7.05□□□□□ -1.28
SNRNP40-202ENST00000373720 EFNA4P52798 201 aa7.05□□□□□ -1.28
SNRNP40-202ENST00000373720 FAM3BP58499 235 aaPredicted RBP7.05□□□□□ -1.28
SNRNP40-202ENST00000373720 GAMTQ14353 236 aa7.05□□□□□ -1.28
SNRNP40-202ENST00000373720 ELOBQ15370 118 aa7.05□□□□□ -1.28
SNRNP40-202ENST00000373720 FAM53AQ6NSI3 398 aaPredicted RBP7.05□□□□□ -1.28
SNRNP40-202ENST00000373720 DUX4L9Q6RFH8 374 aaPredicted RBP7.05□□□□□ -1.28
SNRNP40-202ENST00000373720 SLC16A13Q7RTY0 426 aa7.05□□□□□ -1.28
SNRNP40-202ENST00000373720 PPP1R27Q86WC6 154 aa7.05□□□□□ -1.28
SNRNP40-202ENST00000373720 VKORC1L1Q8N0U8 176 aa7.05□□□□□ -1.28
SNRNP40-202ENST00000373720 ZCCHC24Q8N2G6 241 aaKnown RBP7.05□□□□□ -1.28
SNRNP40-202ENST00000373720 FAM24BQ8N5W8 94 aa7.05□□□□□ -1.28
SNRNP40-202ENST00000373720 NPBQ8NG41 125 aa7.05□□□□□ -1.28
SNRNP40-202ENST00000373720 OR4F5Q8NH21 305 aa7.05□□□□□ -1.28
SNRNP40-202ENST00000373720 TMEM170AQ8WVE7 144 aa7.05□□□□□ -1.28
SNRNP40-202ENST00000373720 LEAP2Q969E1 77 aa7.05□□□□□ -1.28
SNRNP40-202ENST00000373720 TMEM68Q96MH6 324 aa7.05□□□□□ -1.28
SNRNP40-202ENST00000373720 OR4F4Q96R69 305 aa7.05□□□□□ -1.28
SNRNP40-202ENST00000373720 TRGV9Q99603 122 aa7.05□□□□□ -1.28
SNRNP40-202ENST00000373720 CHRDL1Q9BU40 450 aa7.05□□□□□ -1.28
SNRNP40-202ENST00000373720 SSBP3Q9BWW4 388 aaPredicted RBP7.05□□□□□ -1.28
SNRNP40-202ENST00000373720 PARLQ9H300 379 aa7.05□□□□□ -1.28
SNRNP40-202ENST00000373720 SLC25A22Q9H936 323 aa7.05□□□□□ -1.28
SNRNP40-202ENST00000373720 DNAJC4Q9NNZ3 241 aa7.05□□□□□ -1.28
SNRNP40-202ENST00000373720 C1RLQ9NZP8 487 aa7.05□□□□□ -1.28
SNRNP40-202ENST00000373720 PLCE1Q9P212 2302 aa7.05□□□□□ -1.28
SNRNP40-202ENST00000373720 ZGRF1Q86YA3 2104 aa7.04□□□□□ -1.28
SNRNP40-202ENST00000373720 CADP27708 2225 aa7.04□□□□□ -1.28
SNRNP40-202ENST00000373720 A0A1W2PPE3 182 aa7.04□□□□□ -1.28
SNRNP40-202ENST00000373720 TCRBV4S1A1TA0A5B7 111 aa7.04□□□□□ -1.28
SNRNP40-202ENST00000373720 C5orf52A6NGY3 159 aa7.04□□□□□ -1.28
SNRNP40-202ENST00000373720 A6NNC1 897 aa7.04□□□□□ -1.28
SNRNP40-202ENST00000373720 NDUFS8O00217 210 aa7.04□□□□□ -1.28
SNRNP40-202ENST00000373720 PAGE4O60829 102 aa7.04□□□□□ -1.28
SNRNP40-202ENST00000373720 TYMSP04818 313 aa7.04□□□□□ -1.28
SNRNP40-202ENST00000373720 COL8A2P25067 703 aa7.04□□□□□ -1.28
SNRNP40-202ENST00000373720 GCHFRP30047 84 aa7.04□□□□□ -1.28
SNRNP40-202ENST00000373720 LINC00205P59089 165 aa7.04□□□□□ -1.28
SNRNP40-202ENST00000373720 TAS2R60P59551 318 aa7.04□□□□□ -1.28
SNRNP40-202ENST00000373720 PLP1P60201 277 aa7.04□□□□□ -1.28
SNRNP40-202ENST00000373720 S100A12P80511 92 aa7.04□□□□□ -1.28
SNRNP40-202ENST00000373720 HOXA4Q00056 320 aaPredicted RBP7.04□□□□□ -1.28
SNRNP40-202ENST00000373720 ARL6IP6Q8N6S5 226 aa7.04□□□□□ -1.28
SNRNP40-202ENST00000373720 ZNF48Q96MX3 618 aaPredicted RBP7.04□□□□□ -1.28
SNRNP40-202ENST00000373720 HINT2Q9BX68 163 aa7.04□□□□□ -1.28
SNRNP40-202ENST00000373720 KRTAP4-8Q9BYQ9 185 aa7.04□□□□□ -1.28
SNRNP40-202ENST00000373720 ZNF430Q9H8G1 570 aaPredicted RBP7.04□□□□□ -1.28
SNRNP40-202ENST00000373720 SRD5A3Q9H8P0 318 aa7.04□□□□□ -1.28
SNRNP40-202ENST00000373720 DCAF16Q9NXF7 216 aa7.04□□□□□ -1.28
SNRNP40-202ENST00000373720 THYN1Q9P016 225 aa7.04□□□□□ -1.28
SNRNP40-202ENST00000373720 POLR3KQ9Y2Y1 108 aaPredicted RBP7.04□□□□□ -1.28
SNRNP40-202ENST00000373720 SIGLEC9Q9Y336 463 aa7.04□□□□□ -1.28
SNRNP40-202ENST00000373720 PTPRQQ9UMZ3 2332 aa7.04□□□□□ -1.28
SNRNP40-202ENST00000373720 PRRC2CQ9Y520 2896 aaKnown RBP7.03□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms