RNA–Protein interactions for RNA: ENST00000297261.6

SHH-201, Transcript of sonic hedgehog, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHH, Length 4,454 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-201ENST00000297261 LHX2P50458 406 aa12.9□□□□□ -0.35
SHH-201ENST00000297261 DNM1P46Q6ZS02 220 aa12.9□□□□□ -0.35
SHH-201ENST00000297261 NCBP2LA6PVI3 153 aaKnown RBP12.89□□□□□ -0.35
SHH-201ENST00000297261 TDGF1P3P51864 188 aa12.89□□□□□ -0.35
SHH-201ENST00000297261 OR5P3Q8WZ94 311 aa12.89□□□□□ -0.35
SHH-201ENST00000297261 SMIM12Q96EX1 92 aa12.89□□□□□ -0.35
SHH-201ENST00000297261 PRR33A8MZF0 331 aa12.89□□□□□ -0.35
SHH-201ENST00000297261 ZNF324O75467 553 aaPredicted RBP12.89□□□□□ -0.35
SHH-201ENST00000297261 LINC01551Q86U37 167 aa12.89□□□□□ -0.35
SHH-201ENST00000297261 SSBP4Q9BWG4 385 aaPredicted RBP12.89□□□□□ -0.35
SHH-201ENST00000297261 RAMP3O60896 148 aa12.89□□□□□ -0.35
SHH-201ENST00000297261 TM4SF20Q53R12 229 aa12.89□□□□□ -0.35
SHH-201ENST00000297261 RPL39P5Q59GN2 51 aa12.89□□□□□ -0.35
SHH-201ENST00000297261 NMSQ5H8A3 153 aa12.89□□□□□ -0.35
SHH-201ENST00000297261 PLA2G2CQ5R387 149 aa12.89□□□□□ -0.35
SHH-201ENST00000297261 ZIC4Q8N9L1 334 aa12.89□□□□□ -0.35
SHH-201ENST00000297261 RASL11BQ9BPW5 248 aa12.89□□□□□ -0.35
SHH-201ENST00000297261 AP5S1Q9NUS5 200 aa12.89□□□□□ -0.35
SHH-201ENST00000297261 IGKV1-27A0A075B6S5 117 aa12.88□□□□□ -0.35
SHH-201ENST00000297261 ZNF716A6NP11 495 aa12.88□□□□□ -0.35
SHH-201ENST00000297261 CLDN18P56856 261 aa12.88□□□□□ -0.35
SHH-201ENST00000297261 GGNQ86UU5 652 aa12.88□□□□□ -0.35
SHH-201ENST00000297261 SRSF12Q8WXF0 261 aaKnown RBP12.88□□□□□ -0.35
SHH-201ENST00000297261 CLEC5AQ9NY25 188 aa12.88□□□□□ -0.35
SHH-201ENST00000297261 MRPS18CQ9Y3D5 142 aaKnown RBP12.88□□□□□ -0.35
SHH-201ENST00000297261 IGHV3-72A0A0B4J1Y9 119 aa12.88□□□□□ -0.35
SHH-201ENST00000297261 C10orf142B7Z368 130 aa12.88□□□□□ -0.35
SHH-201ENST00000297261 ARF6P62330 175 aa12.88□□□□□ -0.35
SHH-201ENST00000297261 LCN12Q6JVE5 192 aa12.88□□□□□ -0.35
SHH-201ENST00000297261 MIR17HGQ75NE6 70 aa12.88□□□□□ -0.35
SHH-201ENST00000297261 DCTN5Q9BTE1 182 aa12.88□□□□□ -0.35
SHH-201ENST00000297261 REPIN1Q9BWE0 567 aaKnown RBP12.88□□□□□ -0.35
SHH-201ENST00000297261 CDC42EP3Q9UKI2 254 aa12.88□□□□□ -0.35
SHH-201ENST00000297261 CA1P00915 261 aaPredicted RBP12.88□□□□□ -0.35
SHH-201ENST00000297261 LPAR2Q9HBW0 351 aa12.88□□□□□ -0.35
SHH-201ENST00000297261 PPIAL4DF5H284 164 aa12.88□□□□□ -0.35
SHH-201ENST00000297261 LINC00614P0C842 121 aa12.88□□□□□ -0.35
SHH-201ENST00000297261 GNB2P62879 340 aa12.88□□□□□ -0.35
SHH-201ENST00000297261 Q5PR19 223 aa12.88□□□□□ -0.35
SHH-201ENST00000297261 SFTPCP11686 197 aa12.87□□□□□ -0.35
SHH-201ENST00000297261 NPIPB3Q92617 1050 aa12.87□□□□□ -0.35
SHH-201ENST00000297261 H3BVH4 76 aa12.87□□□□□ -0.35
SHH-201ENST00000297261 NPSP0C0P6 89 aa12.87□□□□□ -0.35
SHH-201ENST00000297261 CTSSP25774 331 aa12.87□□□□□ -0.35
SHH-201ENST00000297261 BHLHA15Q7RTS1 189 aaPredicted RBP12.87□□□□□ -0.35
SHH-201ENST00000297261 LIPFP07098 398 aa12.87□□□□□ -0.35
SHH-201ENST00000297261 PCSK4Q6UW60 755 aa12.87□□□□□ -0.35
SHH-201ENST00000297261 ARL6IP6Q8N6S5 226 aa12.87□□□□□ -0.35
SHH-201ENST00000297261 OR10AG1Q8NH19 301 aa12.87□□□□□ -0.35
SHH-201ENST00000297261 GNG7O60262 68 aa12.86□□□□□ -0.35
SHH-201ENST00000297261 CKS2P33552 79 aa12.86□□□□□ -0.35
SHH-201ENST00000297261 CA7P43166 264 aa12.86□□□□□ -0.35
SHH-201ENST00000297261 HBBP68871 147 aa12.86□□□□□ -0.35
SHH-201ENST00000297261 PLPPR1Q8TBJ4 325 aa12.86□□□□□ -0.35
SHH-201ENST00000297261 EAF1Q96JC9 268 aaPredicted RBP12.86□□□□□ -0.35
SHH-201ENST00000297261 CCL13Q99616 98 aa12.86□□□□□ -0.35
SHH-201ENST00000297261 SELENOTP62341 195 aa12.86□□□□□ -0.35
SHH-201ENST00000297261 SRSF6Q13247 344 aaKnown RBP12.86□□□□□ -0.35
SHH-201ENST00000297261 PRR31Q5SQ13 230 aa12.86□□□□□ -0.35
SHH-201ENST00000297261 INO80CQ6PI98 192 aaPredicted RBP12.86□□□□□ -0.35
SHH-201ENST00000297261 SNRNP40Q96DI7 357 aaKnown RBP12.86□□□□□ -0.35
SHH-201ENST00000297261 TNFRSF19Q9NS68 423 aa12.86□□□□□ -0.35
SHH-201ENST00000297261 RNF7Q9UBF6 113 aa12.86□□□□□ -0.35
SHH-201ENST00000297261 HSPB7Q9UBY9 170 aa12.86□□□□□ -0.35
SHH-201ENST00000297261 RALYQ9UKM9 306 aaKnown RBP12.86□□□□□ -0.35
SHH-201ENST00000297261 RPL8P62917 257 aaKnown RBP12.86□□□□□ -0.35
SHH-201ENST00000297261 SLC25A33Q9BSK2 321 aa12.86□□□□□ -0.35
SHH-201ENST00000297261 BPTFQ12830 3046 aa12.86□□□□□ -0.35
SHH-201ENST00000297261 LOC107984156A0A0G2JMH3 177 aa12.86□□□□□ -0.35
SHH-201ENST00000297261 TIMP3P35625 211 aa12.86□□□□□ -0.35
SHH-201ENST00000297261 ARL17AQ8IVW1 177 aa12.86□□□□□ -0.35
SHH-201ENST00000297261 LINC00470Q9BZP3 86 aa12.86□□□□□ -0.35
SHH-201ENST00000297261 CALYQ9NYX4 217 aa12.86□□□□□ -0.35
SHH-201ENST00000297261 PPIAL4AQ9Y536 164 aa12.86□□□□□ -0.35
SHH-201ENST00000297261 CHD9Q3L8U1 2897 aa12.86□□□□□ -0.35
SHH-201ENST00000297261 TRAV9-2A0A087WT02 112 aa12.85□□□□□ -0.35
SHH-201ENST00000297261 RBFOX2O43251 390 aaKnown RBP eCLIP12.85□□□□□ -0.35
SHH-201ENST00000297261 ZNF841Q6ZN19 808 aa12.85□□□□□ -0.35
SHH-201ENST00000297261 ZNF430Q9H8G1 570 aaPredicted RBP12.85□□□□□ -0.35
SHH-201ENST00000297261 A0A0G2JRQ6 117 aa12.85□□□□□ -0.35
SHH-201ENST00000297261 PSMB2P49721 201 aa12.85□□□□□ -0.35
SHH-201ENST00000297261 TBR1Q16650 682 aa12.85□□□□□ -0.35
SHH-201ENST00000297261 J3KRW8 73 aa12.85□□□□□ -0.35
SHH-201ENST00000297261 RIPPLY3P57055 190 aa12.85□□□□□ -0.35
SHH-201ENST00000297261 KLF14Q8TD94 323 aaPredicted RBP12.85□□□□□ -0.35
SHH-201ENST00000297261 WBP1Q96G27 269 aa12.85□□□□□ -0.35
SHH-201ENST00000297261 POLR3KQ9Y2Y1 108 aaPredicted RBP12.85□□□□□ -0.35
SHH-201ENST00000297261 ACTL10Q5JWF8 245 aa12.84□□□□□ -0.35
SHH-201ENST00000297261 ZNRF1Q8ND25 227 aa12.84□□□□□ -0.35
SHH-201ENST00000297261 FGFBP3Q8TAT2 258 aa12.84□□□□□ -0.35
SHH-201ENST00000297261 DIRC2Q96SL1 478 aa12.84□□□□□ -0.35
SHH-201ENST00000297261 SPOCK3Q9BQ16 436 aa12.84□□□□□ -0.35
SHH-201ENST00000297261 PROK2Q9HC23 129 aa12.84□□□□□ -0.35
SHH-201ENST00000297261 HILPDAQ9Y5L2 63 aa12.84□□□□□ -0.35
SHH-201ENST00000297261 OR2T8A6NH00 312 aa12.84□□□□□ -0.35
SHH-201ENST00000297261 HIGD1CA8MV81 97 aa12.84□□□□□ -0.35
SHH-201ENST00000297261 TMEM50AO95807 157 aa12.84□□□□□ -0.35
SHH-201ENST00000297261 REG1AP05451 166 aa12.84□□□□□ -0.35
SHH-201ENST00000297261 PFN1P07737 140 aaKnown RBP12.84□□□□□ -0.35
SHH-201ENST00000297261 CSRP1P21291 193 aaKnown RBP12.84□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms