RNA–Protein interactions for RNA: ENST00000637871.1

CLN3-263, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,606 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-263ENST00000637871 RPP25LQ8N5L8 163 aaKnown RBP14.95□□□□□ -0.02
CLN3-263ENST00000637871 SLC24A4Q8NFF2 622 aa14.95□□□□□ -0.02
CLN3-263ENST00000637871 OR4C13Q8NGP0 309 aa14.95□□□□□ -0.02
CLN3-263ENST00000637871 NEU4Q8WWR8 484 aaPredicted RBP14.95□□□□□ -0.02
CLN3-263ENST00000637871 IGFBPL1Q8WX77 278 aa14.95□□□□□ -0.02
CLN3-263ENST00000637871 RAB1CQ92928 201 aa14.95□□□□□ -0.02
CLN3-263ENST00000637871 VSIRQ9H7M9 311 aa14.95□□□□□ -0.02
CLN3-263ENST00000637871 GNG13Q9P2W3 67 aa14.95□□□□□ -0.02
CLN3-263ENST00000637871 VPS13CQ709C8 3753 aa14.94□□□□□ -0.02
CLN3-263ENST00000637871 A0A087WWC5 75 aa14.94□□□□□ -0.02
CLN3-263ENST00000637871 TRAV3A0A0B4J244 114 aa14.94□□□□□ -0.02
CLN3-263ENST00000637871 hCG_1809904A0A1W2PP81 198 aa14.94□□□□□ -0.02
CLN3-263ENST00000637871 A0A1W2PPE2 198 aa14.94□□□□□ -0.02
CLN3-263ENST00000637871 A0A1W2PR64 198 aa14.94□□□□□ -0.02
CLN3-263ENST00000637871 A0A1W2PRV1 198 aa14.94□□□□□ -0.02
CLN3-263ENST00000637871 CYSRT1A8MQ03 144 aa14.94□□□□□ -0.02
CLN3-263ENST00000637871 PRSS46E5RG02 174 aa14.94□□□□□ -0.02
CLN3-263ENST00000637871 H0YJW9 148 aa14.94□□□□□ -0.02
CLN3-263ENST00000637871 USF1P22415 310 aaPredicted RBP14.94□□□□□ -0.02
CLN3-263ENST00000637871 PRRX1P54821 245 aa14.94□□□□□ -0.02
CLN3-263ENST00000637871 ELLP55199 621 aaPredicted RBP14.94□□□□□ -0.02
CLN3-263ENST00000637871 UTF1Q5T230 341 aa14.94□□□□□ -0.02
CLN3-263ENST00000637871 CBLN2Q8IUK8 224 aa14.94□□□□□ -0.02
CLN3-263ENST00000637871 RXFP4Q8TDU9 374 aa14.94□□□□□ -0.02
CLN3-263ENST00000637871 FLYWCH2Q96CP2 140 aaKnown RBP14.94□□□□□ -0.02
CLN3-263ENST00000637871 NIPSNAP3BQ9BS92 247 aa14.94□□□□□ -0.02
CLN3-263ENST00000637871 PLEKHA3Q9HB20 300 aa14.94□□□□□ -0.02
CLN3-263ENST00000637871 MIOXQ9UGB7 285 aa14.94□□□□□ -0.02
CLN3-263ENST00000637871 SEC14L6B5MCN3 397 aa14.93□□□□□ -0.02
CLN3-263ENST00000637871 NDUFS7O75251 213 aa14.93□□□□□ -0.02
CLN3-263ENST00000637871 IGHV2-70P01814 119 aa14.93□□□□□ -0.02
CLN3-263ENST00000637871 IGHV1-8P0DP01 117 aa14.93□□□□□ -0.02
CLN3-263ENST00000637871 RNF212Q495C1 297 aa14.93□□□□□ -0.02
CLN3-263ENST00000637871 SPINK9Q5DT21 86 aa14.93□□□□□ -0.02
CLN3-263ENST00000637871 ACSM6Q6P461 480 aa14.93□□□□□ -0.02
CLN3-263ENST00000637871 C8orf46Q8TAG6 207 aa14.93□□□□□ -0.02
CLN3-263ENST00000637871 ST6GALNAC6Q969X2 333 aa14.93□□□□□ -0.02
CLN3-263ENST00000637871 TVP23CQ96ET8 276 aa14.93□□□□□ -0.02
CLN3-263ENST00000637871 NAV2Q8IVL1 2488 aa14.93□□□□□ -0.02
CLN3-263ENST00000637871 FCN3O75636 299 aa14.92□□□□□ -0.02
CLN3-263ENST00000637871 LY6HO94772 140 aa14.92□□□□□ -0.02
CLN3-263ENST00000637871 SNRNP70P08621 437 aaKnown RBP14.92□□□□□ -0.02
CLN3-263ENST00000637871 FOLR2P14207 255 aa14.92□□□□□ -0.02
CLN3-263ENST00000637871 LGALS7P47929 136 aa14.92□□□□□ -0.02
CLN3-263ENST00000637871 PSMB3P49720 205 aa14.92□□□□□ -0.02
CLN3-263ENST00000637871 FAM122CQ6P4D5 195 aa14.92□□□□□ -0.02
CLN3-263ENST00000637871 TIMD4Q96H15 378 aa14.92□□□□□ -0.02
CLN3-263ENST00000637871 NABP2Q9BQ15 211 aa14.92□□□□□ -0.02
CLN3-263ENST00000637871 TMEM133Q9H2Q1 129 aa14.92□□□□□ -0.02
CLN3-263ENST00000637871 PRELID1Q9Y255 219 aa14.92□□□□□ -0.02
CLN3-263ENST00000637871 WASHC3Q9Y3C0 194 aa14.92□□□□□ -0.02
CLN3-263ENST00000637871 A0A1W2PN81 502 aa14.92□□□□□ -0.02
CLN3-263ENST00000637871 H3BQ15 152 aa14.92□□□□□ -0.02
CLN3-263ENST00000637871 RRHO14718 337 aa14.92□□□□□ -0.02
CLN3-263ENST00000637871 MT-ND4LP03901 98 aa14.92□□□□□ -0.02
CLN3-263ENST00000637871 CHRNA7P36544 502 aa14.92□□□□□ -0.02
CLN3-263ENST00000637871 C2orf83Q53S99 150 aa14.92□□□□□ -0.02
CLN3-263ENST00000637871 ABHD12Q8N2K0 398 aa14.92□□□□□ -0.02
CLN3-263ENST00000637871 TXNDC17Q9BRA2 123 aa14.92□□□□□ -0.02
CLN3-263ENST00000637871 MRPL20Q9BYC9 149 aaKnown RBP14.92□□□□□ -0.02
CLN3-263ENST00000637871 SIRT7Q9NRC8 400 aa14.92□□□□□ -0.02
CLN3-263ENST00000637871 NOTCH2Q04721 2471 aa14.91□□□□□ -0.02
CLN3-263ENST00000637871 SMCO3A2RU48 225 aa14.91□□□□□ -0.02
CLN3-263ENST00000637871 TMEM250H0YL14 139 aa14.91□□□□□ -0.02
CLN3-263ENST00000637871 AVPI1Q5T686 147 aa14.91□□□□□ -0.02
CLN3-263ENST00000637871 TREML4Q6UXN2 200 aa14.91□□□□□ -0.02
CLN3-263ENST00000637871 TGIF2LXQ8IUE1 241 aa14.91□□□□□ -0.02
CLN3-263ENST00000637871 MRPL41Q8IXM3 137 aaKnown RBP14.91□□□□□ -0.02
CLN3-263ENST00000637871 OR1L8Q8NGR8 309 aa14.91□□□□□ -0.02
CLN3-263ENST00000637871 TMEM167AQ8TBQ9 72 aa14.91□□□□□ -0.02
CLN3-263ENST00000637871 HARBI1Q96MB7 349 aa14.91□□□□□ -0.02
CLN3-263ENST00000637871 AKAP9Q99996 3911 aa14.91□□□□□ -0.02
CLN3-263ENST00000637871 CXorf65A6NEN9 183 aa14.9□□□□□ -0.02
CLN3-263ENST00000637871 ZFP92A6NM28 416 aa14.9□□□□□ -0.02
CLN3-263ENST00000637871 COLCA2A8K830 154 aa14.9□□□□□ -0.02
CLN3-263ENST00000637871 OVOL3O00110 214 aa14.9□□□□□ -0.02
CLN3-263ENST00000637871 SAA1P0DJI8 122 aaPredicted RBP14.9□□□□□ -0.02
CLN3-263ENST00000637871 CDC34P49427 236 aaPredicted RBP14.9□□□□□ -0.02
CLN3-263ENST00000637871 ERHP84090 104 aaKnown RBP14.9□□□□□ -0.02
CLN3-263ENST00000637871 VMA21Q3ZAQ7 101 aa14.9□□□□□ -0.02
CLN3-263ENST00000637871 TEPPQ6URK8 271 aa14.9□□□□□ -0.02
CLN3-263ENST00000637871 CYB561D1Q8N8Q1 229 aa14.9□□□□□ -0.02
CLN3-263ENST00000637871 OR8B3Q8NGG8 313 aa14.9□□□□□ -0.02
CLN3-263ENST00000637871 PERPQ96FX8 193 aa14.9□□□□□ -0.02
CLN3-263ENST00000637871 OR8B2Q96RD0 313 aa14.9□□□□□ -0.02
CLN3-263ENST00000637871 COMMD5Q9GZQ3 224 aa14.9□□□□□ -0.02
CLN3-263ENST00000637871 MLXQ9UH92 298 aa14.9□□□□□ -0.02
CLN3-263ENST00000637871 AMMECR1Q9Y4X0 333 aaPredicted RBP14.9□□□□□ -0.02
CLN3-263ENST00000637871 LSM4Q9Y4Z0 139 aaKnown RBP14.9□□□□□ -0.02
CLN3-263ENST00000637871 PUS1Q9Y606 427 aaKnown RBP eCLIP14.9□□□□□ -0.02
CLN3-263ENST00000637871 TEX50A0A1B0GTY4 177 aa14.89□□□□□ -0.03
CLN3-263ENST00000637871 A0A1W2PPV4 95 aa14.89□□□□□ -0.03
CLN3-263ENST00000637871 IGKV1D-33P01593 117 aa14.89□□□□□ -0.03
CLN3-263ENST00000637871 IGKV1-33P01594 117 aa14.89□□□□□ -0.03
CLN3-263ENST00000637871 IGKV1-16P04430 117 aa14.89□□□□□ -0.03
CLN3-263ENST00000637871 COL8A2P25067 703 aa14.89□□□□□ -0.03
CLN3-263ENST00000637871 MAS1LP35410 378 aa14.89□□□□□ -0.03
CLN3-263ENST00000637871 RPL8P62917 257 aaKnown RBP14.89□□□□□ -0.03
CLN3-263ENST00000637871 ZNF841Q6ZN19 808 aa14.89□□□□□ -0.03
CLN3-263ENST00000637871 BEND2Q8NDZ0 799 aa14.89□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 55.4 ms