RNA–Protein interactions for RNA: ENST00000627232.2

PNKP-220, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 1,530 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-220ENST00000627232 RNASE2P10153 161 aaKnown RBP17.83■□□□□ 0.45
PNKP-220ENST00000627232 RHEBQ15382 184 aa17.83■□□□□ 0.45
PNKP-220ENST00000627232 TMEM249Q2WGJ8 235 aa17.83■□□□□ 0.45
PNKP-220ENST00000627232 TEX45Q8NA69 505 aa17.83■□□□□ 0.45
PNKP-220ENST00000627232 RAB24Q969Q5 203 aa17.83■□□□□ 0.45
PNKP-220ENST00000627232 SSBP3Q9BWW4 388 aaPredicted RBP17.83■□□□□ 0.45
PNKP-220ENST00000627232 SMCO4Q9NRQ5 59 aa17.83■□□□□ 0.45
PNKP-220ENST00000627232 MALRD1Q5VYJ5 2156 aa17.83■□□□□ 0.44
PNKP-220ENST00000627232 M0R036 132 aa17.82■□□□□ 0.44
PNKP-220ENST00000627232 OPN1MWP04001 364 aa17.82■□□□□ 0.44
PNKP-220ENST00000627232 OPN1MW2P0DN77 364 aa17.82■□□□□ 0.44
PNKP-220ENST00000627232 OPN1MW3P0DN78 364 aa17.82■□□□□ 0.44
PNKP-220ENST00000627232 CDC34P49427 236 aaPredicted RBP17.82■□□□□ 0.44
PNKP-220ENST00000627232 ERHP84090 104 aaKnown RBP17.82■□□□□ 0.44
PNKP-220ENST00000627232 TEPPQ6URK8 271 aa17.82■□□□□ 0.44
PNKP-220ENST00000627232 CYB561D1Q8N8Q1 229 aa17.82■□□□□ 0.44
PNKP-220ENST00000627232 OR4P4Q8NGL7 312 aa17.82■□□□□ 0.44
PNKP-220ENST00000627232 RPS10P5Q9NQ39 176 aa17.82■□□□□ 0.44
PNKP-220ENST00000627232 ONECUT1Q9UBC0 465 aa17.82■□□□□ 0.44
PNKP-220ENST00000627232 CACNA1AO00555 2505 aa17.82■□□□□ 0.44
PNKP-220ENST00000627232 PIEZO1Q92508 2521 aa17.82■□□□□ 0.44
PNKP-220ENST00000627232 ABCA4P78363 2273 aa17.82■□□□□ 0.44
PNKP-220ENST00000627232 IGHV1-3A0A0C4DH29 117 aa17.82■□□□□ 0.44
PNKP-220ENST00000627232 C7orf77A4D0Y5 90 aa17.82■□□□□ 0.44
PNKP-220ENST00000627232 RAB31Q13636 194 aa17.82■□□□□ 0.44
PNKP-220ENST00000627232 C17orf50Q8WW18 174 aa17.82■□□□□ 0.44
PNKP-220ENST00000627232 C1orf159Q96HA4 380 aa17.82■□□□□ 0.44
PNKP-220ENST00000627232 UBTD1Q9HAC8 227 aa17.82■□□□□ 0.44
PNKP-220ENST00000627232 MANBALQ9NQG1 85 aa17.82■□□□□ 0.44
PNKP-220ENST00000627232 INSIG2Q9Y5U4 225 aa17.82■□□□□ 0.44
PNKP-220ENST00000627232 PXMP4Q9Y6I8 212 aa17.82■□□□□ 0.44
PNKP-220ENST00000627232 LOC105371242A0A075B767 164 aa17.81■□□□□ 0.44
PNKP-220ENST00000627232 LOC105371267A0A1B0GV96 52 aa17.81■□□□□ 0.44
PNKP-220ENST00000627232 LY6LH3BQJ8 138 aa17.81■□□□□ 0.44
PNKP-220ENST00000627232 C19orf84I3L1E1 186 aa17.81■□□□□ 0.44
PNKP-220ENST00000627232 SNRNP70P08621 437 aaKnown RBP17.81■□□□□ 0.44
PNKP-220ENST00000627232 COX7A1P24310 79 aa17.81■□□□□ 0.44
PNKP-220ENST00000627232 PAX6P26367 422 aa17.81■□□□□ 0.44
PNKP-220ENST00000627232 GPR6P46095 362 aaPredicted RBP17.81■□□□□ 0.44
PNKP-220ENST00000627232 ZNF430Q9H8G1 570 aaPredicted RBP17.81■□□□□ 0.44
PNKP-220ENST00000627232 CHD8Q9HCK8 2581 aa17.8■□□□□ 0.44
PNKP-220ENST00000627232 ENSAO43768 121 aaKnown RBP17.8■□□□□ 0.44
PNKP-220ENST00000627232 YIF1AO95070 293 aa17.8■□□□□ 0.44
PNKP-220ENST00000627232 GOSR1O95249 250 aa17.8■□□□□ 0.44
PNKP-220ENST00000627232 ATF4P18848 351 aaPredicted RBP17.8■□□□□ 0.44
PNKP-220ENST00000627232 PNKDQ8N490 385 aa17.8■□□□□ 0.44
PNKP-220ENST00000627232 OR11H6Q8NGC7 330 aa17.8■□□□□ 0.44
PNKP-220ENST00000627232 RPEQ96AT9 228 aa17.8■□□□□ 0.44
PNKP-220ENST00000627232 TUBA4BQ9H853 241 aa17.8■□□□□ 0.44
PNKP-220ENST00000627232 ADGRG4Q8IZF6 3080 aa17.8■□□□□ 0.44
PNKP-220ENST00000627232 NBASA2RRP1 2371 aa17.79■□□□□ 0.44
PNKP-220ENST00000627232 H3BQ15 152 aa17.79■□□□□ 0.44
PNKP-220ENST00000627232 SLC25A17O43808 307 aa17.79■□□□□ 0.44
PNKP-220ENST00000627232 FBP1P09467 338 aa17.79■□□□□ 0.44
PNKP-220ENST00000627232 CDKN1AP38936 164 aa17.79■□□□□ 0.44
PNKP-220ENST00000627232 RPL29P47914 159 aaKnown RBP17.79■□□□□ 0.44
PNKP-220ENST00000627232 PSMB3P49720 205 aa17.79■□□□□ 0.44
PNKP-220ENST00000627232 EFNA4P52798 201 aa17.79■□□□□ 0.44
PNKP-220ENST00000627232 TMEM144Q7Z5S9 345 aa17.79■□□□□ 0.44
PNKP-220ENST00000627232 MOB3BQ86TA1 216 aa17.79■□□□□ 0.44
PNKP-220ENST00000627232 OR10W1Q8NGF6 305 aa17.79■□□□□ 0.44
PNKP-220ENST00000627232 RNF5Q99942 180 aa17.79■□□□□ 0.44
PNKP-220ENST00000627232 PUS1Q9Y606 427 aaKnown RBP eCLIP17.79■□□□□ 0.44
PNKP-220ENST00000627232 TNCP24821 2201 aa17.78■□□□□ 0.44
PNKP-220ENST00000627232 CRYGBP07316 175 aa17.78■□□□□ 0.44
PNKP-220ENST00000627232 MAS1LP35410 378 aa17.78■□□□□ 0.44
PNKP-220ENST00000627232 DLX1P56177 255 aa17.78■□□□□ 0.44
PNKP-220ENST00000627232 MIC13Q5XKP0 118 aa17.78■□□□□ 0.44
PNKP-220ENST00000627232 C1orf122Q6ZSJ8 110 aa17.78■□□□□ 0.44
PNKP-220ENST00000627232 SLC35E3Q7Z769 313 aa17.78■□□□□ 0.44
PNKP-220ENST00000627232 MMD2Q8IY49 270 aa17.78■□□□□ 0.44
PNKP-220ENST00000627232 KIR3DL3Q8N743 410 aa17.78■□□□□ 0.44
PNKP-220ENST00000627232 CACNG8Q8WXS5 425 aa17.78■□□□□ 0.44
PNKP-220ENST00000627232 IGHV3-72A0A0B4J1Y9 119 aa17.77■□□□□ 0.44
PNKP-220ENST00000627232 A0A1W2PPV4 95 aa17.77■□□□□ 0.44
PNKP-220ENST00000627232 CGB1A6NKQ9 187 aa17.77■□□□□ 0.44
PNKP-220ENST00000627232 GPX4P36969 197 aaPredicted RBP17.77■□□□□ 0.44
PNKP-220ENST00000627232 SUB1P53999 127 aaKnown RBP eCLIP17.77■□□□□ 0.44
PNKP-220ENST00000627232 CD69Q07108 199 aa17.77■□□□□ 0.44
PNKP-220ENST00000627232 MRGPRG-AS1Q2M3A8 158 aa17.77■□□□□ 0.44
PNKP-220ENST00000627232 AKIRIN2Q53H80 203 aa17.77■□□□□ 0.44
PNKP-220ENST00000627232 FAM90A2PQ658T7 463 aa17.77■□□□□ 0.44
PNKP-220ENST00000627232 MRPL41Q8IXM3 137 aaKnown RBP17.77■□□□□ 0.44
PNKP-220ENST00000627232 TVP23CQ96ET8 276 aa17.77■□□□□ 0.44
PNKP-220ENST00000627232 RITA1Q96K30 269 aa17.77■□□□□ 0.44
PNKP-220ENST00000627232 NIPSNAP3BQ9BS92 247 aa17.77■□□□□ 0.44
PNKP-220ENST00000627232 HMGB3O15347 200 aaKnown RBP17.77■□□□□ 0.43
PNKP-220ENST00000627232 PRTN3P24158 256 aa17.77■□□□□ 0.43
PNKP-220ENST00000627232 CEBPGP53567 150 aa17.77■□□□□ 0.43
PNKP-220ENST00000627232 B2MP61769 119 aa17.77■□□□□ 0.43
PNKP-220ENST00000627232 ARF6P62330 175 aa17.77■□□□□ 0.43
PNKP-220ENST00000627232 MEF2BQ02080 365 aaPredicted RBP17.77■□□□□ 0.43
PNKP-220ENST00000627232 C15orf54Q8N8G6 183 aa17.77■□□□□ 0.43
PNKP-220ENST00000627232 FAM122AQ96E09 287 aa17.77■□□□□ 0.43
PNKP-220ENST00000627232 C20orf24Q9BUV8 137 aa17.77■□□□□ 0.43
PNKP-220ENST00000627232 NBEAQ8NFP9 2946 aa17.76■□□□□ 0.43
PNKP-220ENST00000627232 E7EUB6 86 aa17.76■□□□□ 0.43
PNKP-220ENST00000627232 EIF3GO75821 320 aaKnown RBP eCLIP17.76■□□□□ 0.43
PNKP-220ENST00000627232 PSG5Q15238 335 aa17.76■□□□□ 0.43
PNKP-220ENST00000627232 PRSS8Q16651 343 aa17.76■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 40.7 ms