RNA–Protein interactions for RNA: ENST00000572579.1

CHD3-214, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 2

Gene CHD3, Length 931 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-214ENST00000572579 PTBP1P26599 531 aaKnown RBP eCLIP13.55□□□□□ -0.24
CHD3-214ENST00000572579 GPR183P32249 361 aa13.55□□□□□ -0.24
CHD3-214ENST00000572579 CATR1Q13166 79 aa13.55□□□□□ -0.24
CHD3-214ENST00000572579 AIFM2Q9BRQ8 373 aa13.55□□□□□ -0.24
CHD3-214ENST00000572579 QTRT1Q9BXR0 403 aaKnown RBP13.55□□□□□ -0.24
CHD3-214ENST00000572579 FXYD6Q9H0Q3 95 aa13.55□□□□□ -0.24
CHD3-214ENST00000572579 NDUFA4L2Q9NRX3 87 aa13.55□□□□□ -0.24
CHD3-214ENST00000572579 SCAF4O95104 1147 aaKnown RBP13.54□□□□□ -0.24
CHD3-214ENST00000572579 DHFRP00374 187 aa13.54□□□□□ -0.24
CHD3-214ENST00000572579 FGF2P09038 288 aa13.54□□□□□ -0.24
CHD3-214ENST00000572579 OR13C7P0DN81 318 aa13.54□□□□□ -0.24
CHD3-214ENST00000572579 F2RP25116 425 aa13.54□□□□□ -0.24
CHD3-214ENST00000572579 LPAR6P43657 344 aa13.54□□□□□ -0.24
CHD3-214ENST00000572579 FAM106AQ4KMX7 169 aa13.54□□□□□ -0.24
CHD3-214ENST00000572579 TMEM69Q5SWH9 247 aa13.54□□□□□ -0.24
CHD3-214ENST00000572579 ZNF57Q68EA5 555 aaPredicted RBP13.54□□□□□ -0.24
CHD3-214ENST00000572579 BTNL8Q6UX41 500 aa13.54□□□□□ -0.24
CHD3-214ENST00000572579 DMBX1Q8NFW5 382 aa13.54□□□□□ -0.24
CHD3-214ENST00000572579 CD300LFQ8TDQ1 290 aa13.54□□□□□ -0.24
CHD3-214ENST00000572579 CXorf58Q96LI9 332 aa13.54□□□□□ -0.24
CHD3-214ENST00000572579 SRSF8Q9BRL6 282 aaKnown RBP13.54□□□□□ -0.24
CHD3-214ENST00000572579 ZNF436Q9C0F3 470 aaPredicted RBP13.54□□□□□ -0.24
CHD3-214ENST00000572579 COMMD5Q9GZQ3 224 aa13.54□□□□□ -0.24
CHD3-214ENST00000572579 IFT46Q9NQC8 304 aa13.54□□□□□ -0.24
CHD3-214ENST00000572579 COMMD9Q9P000 198 aa13.54□□□□□ -0.24
CHD3-214ENST00000572579 IGHV3-21A0A0B4J1V1 117 aa13.53□□□□□ -0.24
CHD3-214ENST00000572579 KRASP01116 189 aa13.53□□□□□ -0.24
CHD3-214ENST00000572579 IFNA6P05013 189 aa13.53□□□□□ -0.24
CHD3-214ENST00000572579 SERPINE2P07093 398 aa13.53□□□□□ -0.24
CHD3-214ENST00000572579 TRAPPC2P0DI81 140 aa13.53□□□□□ -0.24
CHD3-214ENST00000572579 TRAPPC2BP0DI82 140 aa13.53□□□□□ -0.24
CHD3-214ENST00000572579 HLA-DMAP28067 261 aa13.53□□□□□ -0.24
CHD3-214ENST00000572579 G6PCP35575 357 aa13.53□□□□□ -0.24
CHD3-214ENST00000572579 HERV-K104P61576 105 aa13.53□□□□□ -0.24
CHD3-214ENST00000572579 NCS1P62166 190 aa13.53□□□□□ -0.24
CHD3-214ENST00000572579 CROCCP3Q8IVE0 287 aa13.53□□□□□ -0.24
CHD3-214ENST00000572579 GDPD1Q8N9F7 314 aa13.53□□□□□ -0.24
CHD3-214ENST00000572579 TSPAN14Q8NG11 270 aa13.53□□□□□ -0.24
CHD3-214ENST00000572579 GPX8Q8TED1 209 aa13.53□□□□□ -0.24
CHD3-214ENST00000572579 SLC25A46Q96AG3 418 aa13.53□□□□□ -0.24
CHD3-214ENST00000572579 DGCR14Q96DF8 476 aaKnown RBP13.53□□□□□ -0.24
CHD3-214ENST00000572579 ALMS1Q8TCU4 4167 aa13.53□□□□□ -0.24
CHD3-214ENST00000572579 MARCH11A6NNE9 402 aa13.52□□□□□ -0.25
CHD3-214ENST00000572579 HRH1P35367 487 aa13.52□□□□□ -0.25
CHD3-214ENST00000572579 OR5H2Q8NGV7 314 aa13.52□□□□□ -0.25
CHD3-214ENST00000572579 CHRDL1Q9BU40 450 aa13.52□□□□□ -0.25
CHD3-214ENST00000572579 K7EIM0 57 aa13.51□□□□□ -0.25
CHD3-214ENST00000572579 IGKV1-39P01597 117 aa13.51□□□□□ -0.25
CHD3-214ENST00000572579 IGKV1D-39P04432 117 aa13.51□□□□□ -0.25
CHD3-214ENST00000572579 PRSS3P35030 304 aa13.51□□□□□ -0.25
CHD3-214ENST00000572579 ADMP35318 185 aa13.51□□□□□ -0.25
CHD3-214ENST00000572579 PLET1Q6UQ28 207 aa13.51□□□□□ -0.25
CHD3-214ENST00000572579 CADM3Q8N126 398 aa13.51□□□□□ -0.25
CHD3-214ENST00000572579 OR1L8Q8NGR8 309 aa13.51□□□□□ -0.25
CHD3-214ENST00000572579 VN1R17PQ8TDU5 208 aa13.51□□□□□ -0.25
CHD3-214ENST00000572579 A0A087WXM4 84 aa13.5□□□□□ -0.25
CHD3-214ENST00000572579 OR2T8A6NH00 312 aa13.5□□□□□ -0.25
CHD3-214ENST00000572579 GPR31O00270 319 aa13.5□□□□□ -0.25
CHD3-214ENST00000572579 TGOLN2O43493 480 aa13.5□□□□□ -0.25
CHD3-214ENST00000572579 PHLDA2Q53GA4 152 aa13.5□□□□□ -0.25
CHD3-214ENST00000572579 SLC25A24Q6NUK1 477 aa13.5□□□□□ -0.25
CHD3-214ENST00000572579 SCARB1Q8WTV0 552 aa13.5□□□□□ -0.25
CHD3-214ENST00000572579 OVOL2Q9BRP0 275 aa13.5□□□□□ -0.25
CHD3-214ENST00000572579 FUNDC2Q9BWH2 189 aa13.5□□□□□ -0.25
CHD3-214ENST00000572579 OR51B2Q9Y5P1 312 aa13.5□□□□□ -0.25
CHD3-214ENST00000572579 F11RQ9Y624 299 aaKnown RBP13.5□□□□□ -0.25
CHD3-214ENST00000572579 IGHV3OR16-8A0A075B7F1 116 aa13.49□□□□□ -0.25
CHD3-214ENST00000572579 ELK1P19419 428 aa13.49□□□□□ -0.25
CHD3-214ENST00000572579 TAS2R46P59540 309 aa13.49□□□□□ -0.25
CHD3-214ENST00000572579 VBP1P61758 197 aa13.49□□□□□ -0.25
CHD3-214ENST00000572579 OR52B4Q8NGK2 314 aa13.49□□□□□ -0.25
CHD3-214ENST00000572579 OR6F1Q8NGZ6 308 aa13.49□□□□□ -0.25
CHD3-214ENST00000572579 TMEM190Q8WZ59 177 aa13.49□□□□□ -0.25
CHD3-214ENST00000572579 HINT2Q9BX68 163 aa13.49□□□□□ -0.25
CHD3-214ENST00000572579 TMEM14BQ9NUH8 114 aa13.49□□□□□ -0.25
CHD3-214ENST00000572579 MRPL27Q9P0M9 148 aaKnown RBP13.49□□□□□ -0.25
CHD3-214ENST00000572579 COMMD3Q9UBI1 195 aa13.49□□□□□ -0.25
CHD3-214ENST00000572579 ELLP55199 621 aaPredicted RBP13.48□□□□□ -0.25
CHD3-214ENST00000572579 SLC16A13Q7RTY0 426 aa13.48□□□□□ -0.25
CHD3-214ENST00000572579 HPGDSO60760 199 aa13.47□□□□□ -0.25
CHD3-214ENST00000572579 ERVK-16P61578 105 aa13.47□□□□□ -0.25
CHD3-214ENST00000572579 TBC1D26Q86UD7 250 aa13.47□□□□□ -0.25
CHD3-214ENST00000572579 SNX29P2Q8IUI4 249 aa13.47□□□□□ -0.25
CHD3-214ENST00000572579 CMTM1Q8IZ96 169 aa13.47□□□□□ -0.25
CHD3-214ENST00000572579 BORCS5Q969J3 196 aa13.47□□□□□ -0.25
CHD3-214ENST00000572579 LSM10Q969L4 123 aaKnown RBP13.47□□□□□ -0.25
CHD3-214ENST00000572579 MARC2Q969Z3 335 aa13.47□□□□□ -0.25
CHD3-214ENST00000572579 SEC22AQ96IW7 307 aa13.47□□□□□ -0.25
CHD3-214ENST00000572579 NAA50Q9GZZ1 169 aaKnown RBP13.47□□□□□ -0.25
CHD3-214ENST00000572579 C5orf66Q9H5L9 145 aa13.47□□□□□ -0.25
CHD3-214ENST00000572579 C21orf62Q9NYP8 219 aa13.47□□□□□ -0.25
CHD3-214ENST00000572579 THYN1Q9P016 225 aa13.47□□□□□ -0.25
CHD3-214ENST00000572579 UFC1Q9Y3C8 167 aa13.47□□□□□ -0.25
CHD3-214ENST00000572579 TRAV25A0A0B4J276 109 aa13.46□□□□□ -0.25
CHD3-214ENST00000572579 ZNF207O43670 478 aaKnown RBP13.46□□□□□ -0.25
CHD3-214ENST00000572579 TNFAIP8O95379 198 aa13.46□□□□□ -0.25
CHD3-214ENST00000572579 APOA1P02647 267 aa13.46□□□□□ -0.25
CHD3-214ENST00000572579 CTSGP08311 255 aa13.46□□□□□ -0.25
CHD3-214ENST00000572579 IZUMO4Q1ZYL8 232 aa13.46□□□□□ -0.25
CHD3-214ENST00000572579 THOC7Q6I9Y2 204 aaKnown RBP13.46□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms