RNA–Protein interactions for RNA: ENST00000572270.1

CCDC40-208, Transcript of coiled-coil domain containing 40, humanhuman

TSL 4

Gene CCDC40, Length 460 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-208ENST00000572270 POMPQ9Y244 141 aa9.23□□□□□ -0.93
CCDC40-208ENST00000572270 TMEM14DPA8MWL7 114 aa9.22□□□□□ -0.93
CCDC40-208ENST00000572270 BPNT1O95861 308 aa9.22□□□□□ -0.93
CCDC40-208ENST00000572270 MAPK3P27361 379 aaPredicted RBP9.22□□□□□ -0.93
CCDC40-208ENST00000572270 ETV1P50549 477 aa9.22□□□□□ -0.93
CCDC40-208ENST00000572270 TAS2R43P59537 309 aa9.22□□□□□ -0.93
CCDC40-208ENST00000572270 OR2B8PP59922 312 aa9.22□□□□□ -0.93
CCDC40-208ENST00000572270 NUTF2P61970 127 aaKnown RBP9.22□□□□□ -0.93
CCDC40-208ENST00000572270 ACTL10Q5JWF8 245 aa9.22□□□□□ -0.93
CCDC40-208ENST00000572270 Q6ZSN1 163 aa9.22□□□□□ -0.93
CCDC40-208ENST00000572270 GDPD1Q8N9F7 314 aa9.22□□□□□ -0.93
CCDC40-208ENST00000572270 ARHGAP5-AS1Q96IT6 56 aa9.22□□□□□ -0.93
CCDC40-208ENST00000572270 C17orf77Q96MU5 243 aa9.22□□□□□ -0.93
CCDC40-208ENST00000572270 SRSF8Q9BRL6 282 aaKnown RBP9.22□□□□□ -0.93
CCDC40-208ENST00000572270 GINS3Q9BRX5 216 aa9.22□□□□□ -0.93
CCDC40-208ENST00000572270 PECRQ9BY49 303 aa9.22□□□□□ -0.93
CCDC40-208ENST00000572270 HRASLSQ9HDD0 168 aa9.22□□□□□ -0.93
CCDC40-208ENST00000572270 MRPS18AQ9NVS2 196 aaKnown RBP9.22□□□□□ -0.93
CCDC40-208ENST00000572270 HMCN2Q8NDA2 5059 aa9.21□□□□□ -0.93
CCDC40-208ENST00000572270 PNMA8CA0A1B0GUJ8 204 aa9.21□□□□□ -0.94
CCDC40-208ENST00000572270 LALBAP00709 142 aa9.21□□□□□ -0.94
CCDC40-208ENST00000572270 FCGR1AP12314 374 aa9.21□□□□□ -0.94
CCDC40-208ENST00000572270 GABRB1P18505 474 aa9.21□□□□□ -0.94
CCDC40-208ENST00000572270 RPL30P62888 115 aaKnown RBP9.21□□□□□ -0.94
CCDC40-208ENST00000572270 SCARB1Q8WTV0 552 aa9.21□□□□□ -0.94
CCDC40-208ENST00000572270 TCTEX1D2Q8WW35 142 aa9.21□□□□□ -0.94
CCDC40-208ENST00000572270 ST8SIA2Q92186 375 aa9.21□□□□□ -0.94
CCDC40-208ENST00000572270 COMMD5Q9GZQ3 224 aa9.21□□□□□ -0.94
CCDC40-208ENST00000572270 FGF20Q9NP95 211 aaPredicted RBP9.21□□□□□ -0.94
CCDC40-208ENST00000572270 DKK2Q9UBU2 259 aa9.21□□□□□ -0.94
CCDC40-208ENST00000572270 SAC3D1A6NKF1 404 aa9.2□□□□□ -0.94
CCDC40-208ENST00000572270 J3QRK9 145 aa9.2□□□□□ -0.94
CCDC40-208ENST00000572270 SMR3BP02814 79 aaPredicted RBP9.2□□□□□ -0.94
CCDC40-208ENST00000572270 CDK1P06493 297 aa9.2□□□□□ -0.94
CCDC40-208ENST00000572270 MYL12AP19105 171 aa9.2□□□□□ -0.94
CCDC40-208ENST00000572270 CCL18P55774 89 aa9.2□□□□□ -0.94
CCDC40-208ENST00000572270 ZIK1Q3SY52 487 aaPredicted RBP9.2□□□□□ -0.94
CCDC40-208ENST00000572270 TTC32Q5I0X7 151 aa9.2□□□□□ -0.94
CCDC40-208ENST00000572270 C1orf100Q5SVJ3 147 aa9.2□□□□□ -0.94
CCDC40-208ENST00000572270 FAM222AQ5U5X8 452 aa9.2□□□□□ -0.94
CCDC40-208ENST00000572270 GRAMD2BQ96HH9 432 aa9.2□□□□□ -0.94
CCDC40-208ENST00000572270 AIFM2Q9BRQ8 373 aa9.2□□□□□ -0.94
CCDC40-208ENST00000572270 CENPOQ9BU64 300 aa9.2□□□□□ -0.94
CCDC40-208ENST00000572270 TMEM231Q9H6L2 316 aa9.2□□□□□ -0.94
CCDC40-208ENST00000572270 BET1LQ9NYM9 111 aa9.2□□□□□ -0.94
CCDC40-208ENST00000572270 XCL2Q9UBD3 114 aa9.2□□□□□ -0.94
CCDC40-208ENST00000572270 RBMX2Q9Y388 322 aaKnown RBP9.2□□□□□ -0.94
CCDC40-208ENST00000572270 SLC22A5O76082 557 aa9.19□□□□□ -0.94
CCDC40-208ENST00000572270 CTSGP08311 255 aa9.19□□□□□ -0.94
CCDC40-208ENST00000572270 FCGR3AP08637 254 aa9.19□□□□□ -0.94
CCDC40-208ENST00000572270 ZNF688P0C7X2 276 aa9.19□□□□□ -0.94
CCDC40-208ENST00000572270 DCKP27707 260 aa9.19□□□□□ -0.94
CCDC40-208ENST00000572270 FGF9P31371 208 aaPredicted RBP9.19□□□□□ -0.94
CCDC40-208ENST00000572270 GYS2P54840 703 aa9.19□□□□□ -0.94
CCDC40-208ENST00000572270 TMEM50BP56557 158 aa9.19□□□□□ -0.94
CCDC40-208ENST00000572270 QRFPP83859 136 aa9.19□□□□□ -0.94
CCDC40-208ENST00000572270 OXA1LQ15070 435 aa9.19□□□□□ -0.94
CCDC40-208ENST00000572270 TIMM50Q3ZCQ8 353 aa9.19□□□□□ -0.94
CCDC40-208ENST00000572270 THOC7Q6I9Y2 204 aaKnown RBP9.19□□□□□ -0.94
CCDC40-208ENST00000572270 GSG1LQ6UXU4 331 aa9.19□□□□□ -0.94
CCDC40-208ENST00000572270 H1FOOQ8IZA3 346 aaPredicted RBP9.19□□□□□ -0.94
CCDC40-208ENST00000572270 FAM89BQ8N5H3 189 aa9.19□□□□□ -0.94
CCDC40-208ENST00000572270 STXBP6Q8NFX7 210 aa9.19□□□□□ -0.94
CCDC40-208ENST00000572270 NEU1Q99519 415 aa9.19□□□□□ -0.94
CCDC40-208ENST00000572270 HSD17B10Q99714 261 aaKnown RBP9.19□□□□□ -0.94
CCDC40-208ENST00000572270 QTRT1Q9BXR0 403 aaKnown RBP9.19□□□□□ -0.94
CCDC40-208ENST00000572270 VSIRQ9H7M9 311 aa9.19□□□□□ -0.94
CCDC40-208ENST00000572270 PGPEP1Q9NXJ5 209 aa9.19□□□□□ -0.94
CCDC40-208ENST00000572270 PLA2G2DQ9UNK4 145 aa9.19□□□□□ -0.94
CCDC40-208ENST00000572270 AP4S1Q9Y587 144 aa9.19□□□□□ -0.94
CCDC40-208ENST00000572270 RFNGQ9Y644 331 aa9.19□□□□□ -0.94
CCDC40-208ENST00000572270 IGHV3-66A0A0C4DH42 116 aa9.18□□□□□ -0.94
CCDC40-208ENST00000572270 SMIM9A6NGZ8 99 aa9.18□□□□□ -0.94
CCDC40-208ENST00000572270 SERPINE2P07093 398 aa9.18□□□□□ -0.94
CCDC40-208ENST00000572270 OR13C7P0DN81 318 aa9.18□□□□□ -0.94
CCDC40-208ENST00000572270 DLK1P80370 383 aa9.18□□□□□ -0.94
CCDC40-208ENST00000572270 DNAL1Q4LDG9 190 aa9.18□□□□□ -0.94
CCDC40-208ENST00000572270 RBM48Q5RL73 367 aaKnown RBP9.18□□□□□ -0.94
CCDC40-208ENST00000572270 HSD17B13Q7Z5P4 300 aaPredicted RBP9.18□□□□□ -0.94
CCDC40-208ENST00000572270 OR10W1Q8NGF6 305 aa9.18□□□□□ -0.94
CCDC40-208ENST00000572270 MAFIPQ8WZ33 124 aa9.18□□□□□ -0.94
CCDC40-208ENST00000572270 CENPNQ96H22 339 aaPredicted RBP9.18□□□□□ -0.94
CCDC40-208ENST00000572270 SPATA2Q9UM82 520 aa9.18□□□□□ -0.94
CCDC40-208ENST00000572270 PUS1Q9Y606 427 aaKnown RBP eCLIP9.18□□□□□ -0.94
CCDC40-208ENST00000572270 F11RQ9Y624 299 aaKnown RBP9.18□□□□□ -0.94
CCDC40-208ENST00000572270 IGHV3OR16-12A0A075B7B8 117 aa9.17□□□□□ -0.94
CCDC40-208ENST00000572270 FOXI3A8MTJ6 420 aaPredicted RBP9.17□□□□□ -0.94
CCDC40-208ENST00000572270 K7EIM0 57 aa9.17□□□□□ -0.94
CCDC40-208ENST00000572270 K7EQG2 157 aa9.17□□□□□ -0.94
CCDC40-208ENST00000572270 ALPLP05186 524 aa9.17□□□□□ -0.94
CCDC40-208ENST00000572270 DAD1P61803 113 aa9.17□□□□□ -0.94
CCDC40-208ENST00000572270 ZNF773Q6PK81 442 aa9.17□□□□□ -0.94
CCDC40-208ENST00000572270 OR56B1Q8NGI3 324 aa9.17□□□□□ -0.94
CCDC40-208ENST00000572270 RHOXF1Q8NHV9 184 aa9.17□□□□□ -0.94
CCDC40-208ENST00000572270 RPS10-NUDT3A0A1W2PQS6 291 aa9.16□□□□□ -0.94
CCDC40-208ENST00000572270 IRGMA1A4Y4 181 aa9.16□□□□□ -0.94
CCDC40-208ENST00000572270 KRTAP29-1A8MX34 341 aaPredicted RBP9.16□□□□□ -0.94
CCDC40-208ENST00000572270 EREGO14944 169 aa9.16□□□□□ -0.94
CCDC40-208ENST00000572270 GYG2O15488 501 aa9.16□□□□□ -0.94
CCDC40-208ENST00000572270 NUDT3O95989 172 aa9.16□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms