RNA–Protein interactions for RNA: ENST00000570359.1

VPS53-206, Transcript of VPS53, GARP complex subunit, humanhuman

Gene VPS53, Length 2,781 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-206ENST00000570359 SLC24A4Q8NFF2 622 aa8.1□□□□□ -1.11
VPS53-206ENST00000570359 ZFYVE26Q68DK2 2539 aa8.1□□□□□ -1.11
VPS53-206ENST00000570359 IGHV3-21A0A0B4J1V1 117 aa8.1□□□□□ -1.11
VPS53-206ENST00000570359 APOBEC3AP31941 199 aaPredicted RBP8.1□□□□□ -1.11
VPS53-206ENST00000570359 CDC34P49427 236 aaPredicted RBP8.1□□□□□ -1.11
VPS53-206ENST00000570359 CR1LQ2VPA4 569 aa8.1□□□□□ -1.11
VPS53-206ENST00000570359 C19orf35Q6ZS72 473 aa8.1□□□□□ -1.11
VPS53-206ENST00000570359 SLC25A48Q6ZT89 311 aaKnown RBP8.1□□□□□ -1.11
VPS53-206ENST00000570359 OR51G1Q8NGK1 321 aa8.1□□□□□ -1.11
VPS53-206ENST00000570359 PLEKHA3Q9HB20 300 aa8.1□□□□□ -1.11
VPS53-206ENST00000570359 SSUH2Q9Y2M2 353 aa8.1□□□□□ -1.11
VPS53-206ENST00000570359 C17orf112F2Z3M2 114 aa8.1□□□□□ -1.11
VPS53-206ENST00000570359 HSPB1P04792 205 aaKnown RBP8.1□□□□□ -1.11
VPS53-206ENST00000570359 CA7P43166 264 aa8.1□□□□□ -1.11
VPS53-206ENST00000570359 VDAC2P45880 294 aaPredicted RBP8.1□□□□□ -1.11
VPS53-206ENST00000570359 GNB1P62873 340 aa8.1□□□□□ -1.11
VPS53-206ENST00000570359 PAX5Q02548 391 aa8.1□□□□□ -1.11
VPS53-206ENST00000570359 KLRB1Q12918 225 aa8.1□□□□□ -1.11
VPS53-206ENST00000570359 SPATA31B1PQ5VZV4 182 aa8.1□□□□□ -1.11
VPS53-206ENST00000570359 TREML4Q6UXN2 200 aa8.1□□□□□ -1.11
VPS53-206ENST00000570359 TCTEX1D1Q8N7M0 179 aa8.1□□□□□ -1.11
VPS53-206ENST00000570359 TVP23CQ96ET8 276 aa8.1□□□□□ -1.11
VPS53-206ENST00000570359 RITA1Q96K30 269 aa8.1□□□□□ -1.11
VPS53-206ENST00000570359 TMEM68Q96MH6 324 aa8.1□□□□□ -1.11
VPS53-206ENST00000570359 MGST2Q99735 147 aa8.1□□□□□ -1.11
VPS53-206ENST00000570359 SSX3Q99909 188 aa8.1□□□□□ -1.11
VPS53-206ENST00000570359 SMIM7Q9BQ49 75 aa8.1□□□□□ -1.11
VPS53-206ENST00000570359 ACTR3CQ9C0K3 210 aaPredicted RBP8.1□□□□□ -1.11
VPS53-206ENST00000570359 RAB9BQ9NP90 201 aa8.1□□□□□ -1.11
VPS53-206ENST00000570359 TPSG1Q9NRR2 321 aa8.1□□□□□ -1.11
VPS53-206ENST00000570359 ACACBO00763 2458 aa8.09□□□□□ -1.11
VPS53-206ENST00000570359 TGIF2-C20orf24A0A0A6YYL0 155 aa8.09□□□□□ -1.11
VPS53-206ENST00000570359 HRASP01112 189 aa8.09□□□□□ -1.11
VPS53-206ENST00000570359 APOA2P02652 100 aa8.09□□□□□ -1.11
VPS53-206ENST00000570359 IGFBP2P18065 325 aa8.09□□□□□ -1.11
VPS53-206ENST00000570359 LOXP28300 417 aaPredicted RBP8.09□□□□□ -1.11
VPS53-206ENST00000570359 MAS1LP35410 378 aa8.09□□□□□ -1.11
VPS53-206ENST00000570359 LGALS4P56470 323 aa8.09□□□□□ -1.11
VPS53-206ENST00000570359 KHDC3LQ587J8 217 aa8.09□□□□□ -1.11
VPS53-206ENST00000570359 C14orf144Q96I85 54 aa8.09□□□□□ -1.11
VPS53-206ENST00000570359 ONECUT1Q9UBC0 465 aa8.09□□□□□ -1.11
VPS53-206ENST00000570359 PXMP4Q9Y6I8 212 aa8.09□□□□□ -1.11
VPS53-206ENST00000570359 E7EUB6 86 aa8.09□□□□□ -1.11
VPS53-206ENST00000570359 SLC25A17O43808 307 aa8.09□□□□□ -1.11
VPS53-206ENST00000570359 IFNA1P01562 189 aa8.09□□□□□ -1.11
VPS53-206ENST00000570359 KIR2DS2P43631 304 aa8.09□□□□□ -1.11
VPS53-206ENST00000570359 PSMB3P49720 205 aa8.09□□□□□ -1.11
VPS53-206ENST00000570359 ADORA2A-AS1P86434 159 aa8.09□□□□□ -1.11
VPS53-206ENST00000570359 ATP6V1FQ16864 119 aa8.09□□□□□ -1.11
VPS53-206ENST00000570359 ARSJQ5FYB0 599 aaPredicted RBP8.09□□□□□ -1.11
VPS53-206ENST00000570359 FAM90A2PQ658T7 463 aa8.09□□□□□ -1.11
VPS53-206ENST00000570359 DPPA3Q6W0C5 159 aa8.09□□□□□ -1.11
VPS53-206ENST00000570359 REC114Q7Z4M0 266 aa8.09□□□□□ -1.11
VPS53-206ENST00000570359 LHFPL4Q7Z7J7 247 aa8.09□□□□□ -1.11
VPS53-206ENST00000570359 FAM216AQ8WUB2 273 aa8.09□□□□□ -1.11
VPS53-206ENST00000570359 ACY3Q96HD9 319 aa8.09□□□□□ -1.11
VPS53-206ENST00000570359 DIRC2Q96SL1 478 aa8.09□□□□□ -1.11
VPS53-206ENST00000570359 VAX2Q9UIW0 290 aa8.09□□□□□ -1.11
VPS53-206ENST00000570359 CTXND1A0A1B0GTU2 59 aa8.08□□□□□ -1.12
VPS53-206ENST00000570359 PGPEP1LA6NFU8 196 aa8.08□□□□□ -1.12
VPS53-206ENST00000570359 RNF224P0DH78 156 aa8.08□□□□□ -1.12
VPS53-206ENST00000570359 RAB5AP20339 215 aa8.08□□□□□ -1.12
VPS53-206ENST00000570359 ATP5G3P48201 142 aa8.08□□□□□ -1.12
VPS53-206ENST00000570359 HSPE1P61604 102 aaKnown RBP8.08□□□□□ -1.12
VPS53-206ENST00000570359 RPP30P78346 268 aaKnown RBP8.08□□□□□ -1.12
VPS53-206ENST00000570359 RHEBQ15382 184 aa8.08□□□□□ -1.12
VPS53-206ENST00000570359 ACOT6Q3I5F7 207 aaPredicted RBP8.08□□□□□ -1.12
VPS53-206ENST00000570359 C9orf152Q5JTZ5 239 aa8.08□□□□□ -1.12
VPS53-206ENST00000570359 UNKLQ9H9P5 680 aaKnown RBP8.08□□□□□ -1.12
VPS53-206ENST00000570359 SIRT7Q9NRC8 400 aa8.08□□□□□ -1.12
VPS53-206ENST00000570359 DOK5Q9P104 306 aa8.08□□□□□ -1.12
VPS53-206ENST00000570359 CXCL1P09341 107 aa8.08□□□□□ -1.12
VPS53-206ENST00000570359 ARL14EPLP0DKL9 152 aa8.08□□□□□ -1.12
VPS53-206ENST00000570359 CD24P25063 80 aa8.08□□□□□ -1.12
VPS53-206ENST00000570359 CNTFRP26992 372 aa8.08□□□□□ -1.12
VPS53-206ENST00000570359 GNB2P62879 340 aa8.08□□□□□ -1.12
VPS53-206ENST00000570359 MEF2BQ02080 365 aaPredicted RBP8.08□□□□□ -1.12
VPS53-206ENST00000570359 C4orf17Q53FE4 359 aa8.08□□□□□ -1.12
VPS53-206ENST00000570359 WDR25Q64LD2 544 aaPredicted RBP8.08□□□□□ -1.12
VPS53-206ENST00000570359 HEPN1Q6WQI6 88 aa8.08□□□□□ -1.12
VPS53-206ENST00000570359 MBD3L1Q8WWY6 194 aa8.08□□□□□ -1.12
VPS53-206ENST00000570359 C2orf88Q9BSF0 95 aa8.08□□□□□ -1.12
VPS53-206ENST00000570359 DERL1Q9BUN8 251 aa8.08□□□□□ -1.12
VPS53-206ENST00000570359 COMMD5Q9GZQ3 224 aa8.08□□□□□ -1.12
VPS53-206ENST00000570359 WDR83OSQ9Y284 106 aa8.08□□□□□ -1.12
VPS53-206ENST00000570359 A0A0U1RQK1 487 aa8.07□□□□□ -1.12
VPS53-206ENST00000570359 CYB5BO43169 146 aa8.07□□□□□ -1.12
VPS53-206ENST00000570359 RBFOX2O43251 390 aaKnown RBP eCLIP8.07□□□□□ -1.12
VPS53-206ENST00000570359 YIF1AO95070 293 aa8.07□□□□□ -1.12
VPS53-206ENST00000570359 TGIF2LXQ8IUE1 241 aa8.07□□□□□ -1.12
VPS53-206ENST00000570359 ARL6IP6Q8N6S5 226 aa8.07□□□□□ -1.12
VPS53-206ENST00000570359 OR10A7Q8NGE5 316 aa8.07□□□□□ -1.12
VPS53-206ENST00000570359 ABHD5Q8WTS1 349 aa8.07□□□□□ -1.12
VPS53-206ENST00000570359 Q8WTZ3 238 aa8.07□□□□□ -1.12
VPS53-206ENST00000570359 FLYWCH2Q96CP2 140 aaKnown RBP8.07□□□□□ -1.12
VPS53-206ENST00000570359 GGTLC1Q9BX51 225 aa8.07□□□□□ -1.12
VPS53-206ENST00000570359 CACNA1AO00555 2505 aa8.07□□□□□ -1.12
VPS53-206ENST00000570359 TEX50A0A1B0GTY4 177 aa8.07□□□□□ -1.12
VPS53-206ENST00000570359 A0A1B0GV90 55 aa8.07□□□□□ -1.12
VPS53-206ENST00000570359 B9A039 149 aa8.07□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 65.5 ms