RNA–Protein interactions for RNA: ENST00000570062.1

VPS39-213, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 842 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-213ENST00000570062 HBE1P02100 147 aa6.44□□□□□ -1.38
VPS39-213ENST00000570062 IGKV1-16P04430 117 aa6.44□□□□□ -1.38
VPS39-213ENST00000570062 NMBP08949 121 aa6.44□□□□□ -1.38
VPS39-213ENST00000570062 IAPPP10997 89 aa6.44□□□□□ -1.38
VPS39-213ENST00000570062 VDAC2P45880 294 aaPredicted RBP6.44□□□□□ -1.38
VPS39-213ENST00000570062 LCN2P80188 198 aa6.44□□□□□ -1.38
VPS39-213ENST00000570062 PAX8Q06710 450 aa6.44□□□□□ -1.38
VPS39-213ENST00000570062 SLC38A11Q08AI6 406 aa6.44□□□□□ -1.38
VPS39-213ENST00000570062 CLEC12BQ2HXU8 276 aa6.44□□□□□ -1.38
VPS39-213ENST00000570062 LCE1DQ5T752 114 aa6.44□□□□□ -1.38
VPS39-213ENST00000570062 PXDC1Q5TGL8 231 aa6.44□□□□□ -1.38
VPS39-213ENST00000570062 UQCC3Q6UW78 93 aa6.44□□□□□ -1.38
VPS39-213ENST00000570062 CENPVQ7Z7K6 275 aaPredicted RBP6.44□□□□□ -1.38
VPS39-213ENST00000570062 LFNGQ8NES3 379 aa6.44□□□□□ -1.38
VPS39-213ENST00000570062 CACNG8Q8WXS5 425 aa6.44□□□□□ -1.38
VPS39-213ENST00000570062 NARFLQ9H6Q4 476 aa6.44□□□□□ -1.38
VPS39-213ENST00000570062 AUP1Q9Y679 476 aa6.44□□□□□ -1.38
VPS39-213ENST00000570062 ARFGEF3Q5TH69 2177 aa6.44□□□□□ -1.38
VPS39-213ENST00000570062 LRBAP50851 2863 aa6.43□□□□□ -1.38
VPS39-213ENST00000570062 ITPR2Q14571 2701 aa6.43□□□□□ -1.38
VPS39-213ENST00000570062 RPS10-NUDT3A0A1W2PQS6 291 aa6.43□□□□□ -1.38
VPS39-213ENST00000570062 RAB19A4D1S5 217 aa6.43□□□□□ -1.38
VPS39-213ENST00000570062 ZNF705EA8MWA4 302 aaPredicted RBP6.43□□□□□ -1.38
VPS39-213ENST00000570062 KCNAB3O43448 404 aa6.43□□□□□ -1.38
VPS39-213ENST00000570062 IFNA4P05014 189 aa6.43□□□□□ -1.38
VPS39-213ENST00000570062 MSMBP08118 114 aa6.43□□□□□ -1.38
VPS39-213ENST00000570062 METTL15P1P0C7V9 234 aa6.43□□□□□ -1.38
VPS39-213ENST00000570062 RNF224P0DH78 156 aa6.43□□□□□ -1.38
VPS39-213ENST00000570062 SAA1P0DJI8 122 aaPredicted RBP6.43□□□□□ -1.38
VPS39-213ENST00000570062 FOSL1P15407 271 aa6.43□□□□□ -1.38
VPS39-213ENST00000570062 NPY1RP25929 384 aa6.43□□□□□ -1.38
VPS39-213ENST00000570062 ZFP36P26651 326 aaKnown RBP6.43□□□□□ -1.38
VPS39-213ENST00000570062 GPX4P36969 197 aaPredicted RBP6.43□□□□□ -1.38
VPS39-213ENST00000570062 REG1BP48304 166 aa6.43□□□□□ -1.38
VPS39-213ENST00000570062 LINC00205P59089 165 aa6.43□□□□□ -1.38
VPS39-213ENST00000570062 DLK1P80370 383 aa6.43□□□□□ -1.38
VPS39-213ENST00000570062 LOXL1Q08397 574 aaPredicted RBP6.43□□□□□ -1.38
VPS39-213ENST00000570062 EBI3Q14213 229 aa6.43□□□□□ -1.38
VPS39-213ENST00000570062 CLINT1Q14677 625 aa6.43□□□□□ -1.38
VPS39-213ENST00000570062 IZUMO4Q1ZYL8 232 aa6.43□□□□□ -1.38
VPS39-213ENST00000570062 VWC2Q2TAL6 325 aa6.43□□□□□ -1.38
VPS39-213ENST00000570062 LRRC75BQ2VPJ9 315 aa6.43□□□□□ -1.38
VPS39-213ENST00000570062 C2orf83Q53S99 150 aa6.43□□□□□ -1.38
VPS39-213ENST00000570062 AKR1C8PQ5T2L2 129 aa6.43□□□□□ -1.38
VPS39-213ENST00000570062 ETFRF1Q6IPR1 90 aa6.43□□□□□ -1.38
VPS39-213ENST00000570062 IL34Q6ZMJ4 242 aa6.43□□□□□ -1.38
VPS39-213ENST00000570062 ETV3LQ6ZN32 361 aa6.43□□□□□ -1.38
VPS39-213ENST00000570062 PPP1R27Q86WC6 154 aa6.43□□□□□ -1.38
VPS39-213ENST00000570062 TMEM217Q8N7C4 229 aa6.43□□□□□ -1.38
VPS39-213ENST00000570062 SLC24A4Q8NFF2 622 aa6.43□□□□□ -1.38
VPS39-213ENST00000570062 NPBQ8NG41 125 aa6.43□□□□□ -1.38
VPS39-213ENST00000570062 RNASEH2CQ8TDP1 164 aaKnown RBP6.43□□□□□ -1.38
VPS39-213ENST00000570062 TMED6Q8WW62 240 aa6.43□□□□□ -1.38
VPS39-213ENST00000570062 PERPQ96FX8 193 aa6.43□□□□□ -1.38
VPS39-213ENST00000570062 FAM210AQ96ND0 272 aa6.43□□□□□ -1.38
VPS39-213ENST00000570062 SMIM3Q9BZL3 60 aa6.43□□□□□ -1.38
VPS39-213ENST00000570062 SMDT1Q9H4I9 107 aa6.43□□□□□ -1.38
VPS39-213ENST00000570062 NPVFQ9HCQ7 196 aa6.43□□□□□ -1.38
VPS39-213ENST00000570062 SIRT7Q9NRC8 400 aa6.43□□□□□ -1.38
VPS39-213ENST00000570062 NDUFA4L2Q9NRX3 87 aa6.43□□□□□ -1.38
VPS39-213ENST00000570062 USP9YO00507 2555 aaPredicted RBP6.43□□□□□ -1.38
VPS39-213ENST00000570062 NF1P21359 2839 aa6.43□□□□□ -1.38
VPS39-213ENST00000570062 HIVEP3Q5T1R4 2406 aa6.42□□□□□ -1.38
VPS39-213ENST00000570062 TEX50A0A1B0GTY4 177 aa6.42□□□□□ -1.38
VPS39-213ENST00000570062 A0A1W2PPI3 338 aa6.42□□□□□ -1.38
VPS39-213ENST00000570062 A1L4Q6 167 aa6.42□□□□□ -1.38
VPS39-213ENST00000570062 SRRM4A7MD48 611 aaKnown RBP6.42□□□□□ -1.38
VPS39-213ENST00000570062 KRBOX1C9JBD0 128 aa6.42□□□□□ -1.38
VPS39-213ENST00000570062 H3BP45 60 aa6.42□□□□□ -1.38
VPS39-213ENST00000570062 PRH1P02810 166 aa6.42□□□□□ -1.38
VPS39-213ENST00000570062 RPLP1P05386 114 aaKnown RBP6.42□□□□□ -1.38
VPS39-213ENST00000570062 FAM157CP0CG43 387 aa6.42□□□□□ -1.38
VPS39-213ENST00000570062 ATP6V0CP27449 155 aa6.42□□□□□ -1.38
VPS39-213ENST00000570062 PSG5Q15238 335 aa6.42□□□□□ -1.38
VPS39-213ENST00000570062 AANATQ16613 207 aa6.42□□□□□ -1.38
VPS39-213ENST00000570062 PRSS8Q16651 343 aa6.42□□□□□ -1.38
VPS39-213ENST00000570062 DEFB113Q30KQ7 82 aa6.42□□□□□ -1.38
VPS39-213ENST00000570062 UTF1Q5T230 341 aa6.42□□□□□ -1.38
VPS39-213ENST00000570062 VKORC1L1Q8N0U8 176 aa6.42□□□□□ -1.38
VPS39-213ENST00000570062 LINC01356Q8N9X3 169 aa6.42□□□□□ -1.38
VPS39-213ENST00000570062 OR2G3Q8NGZ4 309 aa6.42□□□□□ -1.38
VPS39-213ENST00000570062 MARC2Q969Z3 335 aa6.42□□□□□ -1.38
VPS39-213ENST00000570062 WDR61Q9GZS3 305 aaKnown RBP6.42□□□□□ -1.38
VPS39-213ENST00000570062 MMP26Q9NRE1 261 aa6.42□□□□□ -1.38
VPS39-213ENST00000570062 SIGLEC9Q9Y336 463 aa6.42□□□□□ -1.38
VPS39-213ENST00000570062 CACNA1DQ01668 2161 aa6.42□□□□□ -1.38
VPS39-213ENST00000570062 DSCAMO60469 2012 aa6.42□□□□□ -1.38
VPS39-213ENST00000570062 NBASA2RRP1 2371 aa6.42□□□□□ -1.38
VPS39-213ENST00000570062 ICE1Q9Y2F5 2266 aa6.41□□□□□ -1.38
VPS39-213ENST00000570062 IGHV4-61A0A0C4DH41 118 aa6.41□□□□□ -1.38
VPS39-213ENST00000570062 PMS2P5A8MQ11 134 aa6.41□□□□□ -1.38
VPS39-213ENST00000570062 RNASEK-C17orf49H0YIS7 233 aa6.41□□□□□ -1.38
VPS39-213ENST00000570062 RRHO14718 337 aa6.41□□□□□ -1.38
VPS39-213ENST00000570062 TIMM23O14925 209 aa6.41□□□□□ -1.38
VPS39-213ENST00000570062 NPFFO15130 113 aa6.41□□□□□ -1.38
VPS39-213ENST00000570062 NBR2O15453 112 aa6.41□□□□□ -1.38
VPS39-213ENST00000570062 SLC25A17O43808 307 aa6.41□□□□□ -1.38
VPS39-213ENST00000570062 FBXO24O75426 580 aa6.41□□□□□ -1.38
VPS39-213ENST00000570062 NXPH3O95157 252 aa6.41□□□□□ -1.38
VPS39-213ENST00000570062 NDUFA3O95167 84 aa6.41□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms