RNA–Protein interactions for RNA: ENST00000564096.1

CLK3-214, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 805 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-214ENST00000564096 CD300CQ08708 224 aa10.19□□□□□ -0.78
CLK3-214ENST00000564096 TUSC1Q2TAM9 212 aa10.19□□□□□ -0.78
CLK3-214ENST00000564096 SPINK9Q5DT21 86 aa10.19□□□□□ -0.78
CLK3-214ENST00000564096 C10orf55Q5SWW7 151 aa10.19□□□□□ -0.78
CLK3-214ENST00000564096 ZNF562Q6V9R5 426 aa10.19□□□□□ -0.78
CLK3-214ENST00000564096 NOXA1Q86UR1 476 aa10.19□□□□□ -0.78
CLK3-214ENST00000564096 STX12Q86Y82 276 aa10.19□□□□□ -0.78
CLK3-214ENST00000564096 SLC25A31Q9H0C2 315 aa10.19□□□□□ -0.78
CLK3-214ENST00000564096 HEYLQ9NQ87 328 aaPredicted RBP10.19□□□□□ -0.78
CLK3-214ENST00000564096 ZC4H2Q9NQZ6 224 aa10.19□□□□□ -0.78
CLK3-214ENST00000564096 NDUFA4L2Q9NRX3 87 aa10.19□□□□□ -0.78
CLK3-214ENST00000564096 LYRM2Q9NU23 88 aaPredicted RBP10.19□□□□□ -0.78
CLK3-214ENST00000564096 DNAJC9-AS1A6NH13 148 aa10.18□□□□□ -0.78
CLK3-214ENST00000564096 INS-IGF2F8WCM5 200 aa10.18□□□□□ -0.78
CLK3-214ENST00000564096 CLDN34H7C241 214 aa10.18□□□□□ -0.78
CLK3-214ENST00000564096 ARPC5O15511 151 aa10.18□□□□□ -0.78
CLK3-214ENST00000564096 CHST1O43916 411 aa10.18□□□□□ -0.78
CLK3-214ENST00000564096 FAM157CP0CG43 387 aa10.18□□□□□ -0.78
CLK3-214ENST00000564096 LYL1P12980 280 aa10.18□□□□□ -0.78
CLK3-214ENST00000564096 SNCAP37840 140 aa10.18□□□□□ -0.78
CLK3-214ENST00000564096 CX3CL1P78423 397 aa10.18□□□□□ -0.78
CLK3-214ENST00000564096 PJVKQ0ZLH3 352 aa10.18□□□□□ -0.78
CLK3-214ENST00000564096 TMEM65Q6PI78 240 aa10.18□□□□□ -0.78
CLK3-214ENST00000564096 SLC24A4Q8NFF2 622 aa10.18□□□□□ -0.78
CLK3-214ENST00000564096 SMIM8Q96KF7 97 aa10.18□□□□□ -0.78
CLK3-214ENST00000564096 PARP11Q9NR21 331 aa10.18□□□□□ -0.78
CLK3-214ENST00000564096 TNFRSF19Q9NS68 423 aa10.18□□□□□ -0.78
CLK3-214ENST00000564096 PSENENQ9NZ42 101 aa10.18□□□□□ -0.78
CLK3-214ENST00000564096 OR5AC2Q9NZP5 309 aa10.18□□□□□ -0.78
CLK3-214ENST00000564096 STRAPQ9Y3F4 350 aaKnown RBP10.18□□□□□ -0.78
CLK3-214ENST00000564096 U3KQ87 197 aa10.18□□□□□ -0.78
CLK3-214ENST00000564096 CSPG4Q6UVK1 2322 aa10.18□□□□□ -0.78
CLK3-214ENST00000564096 IGHV7-81A0A0B4J1V7 117 aa10.17□□□□□ -0.78
CLK3-214ENST00000564096 HMSDA8MTL9 139 aa10.17□□□□□ -0.78
CLK3-214ENST00000564096 G3V3Q6 166 aa10.17□□□□□ -0.78
CLK3-214ENST00000564096 CYB5BO43169 146 aa10.17□□□□□ -0.78
CLK3-214ENST00000564096 IFNA10P01566 189 aa10.17□□□□□ -0.78
CLK3-214ENST00000564096 C4BPBP20851 252 aa10.17□□□□□ -0.78
CLK3-214ENST00000564096 HTR2BP41595 481 aa10.17□□□□□ -0.78
CLK3-214ENST00000564096 EIF2B2P49770 351 aaKnown RBP10.17□□□□□ -0.78
CLK3-214ENST00000564096 SUB1P53999 127 aaKnown RBP eCLIP10.17□□□□□ -0.78
CLK3-214ENST00000564096 ATP5IP56385 69 aaPredicted RBP10.17□□□□□ -0.78
CLK3-214ENST00000564096 RPL15P61313 204 aaKnown RBP10.17□□□□□ -0.78
CLK3-214ENST00000564096 BAXQ07812 192 aa10.17□□□□□ -0.78
CLK3-214ENST00000564096 ZNF345Q14585 488 aa10.17□□□□□ -0.78
CLK3-214ENST00000564096 MRGPRG-AS1Q2M3A8 158 aa10.17□□□□□ -0.78
CLK3-214ENST00000564096 ARSJQ5FYB0 599 aaPredicted RBP10.17□□□□□ -0.78
CLK3-214ENST00000564096 C9orf152Q5JTZ5 239 aa10.17□□□□□ -0.78
CLK3-214ENST00000564096 Q71RC1 249 aaPredicted RBP10.17□□□□□ -0.78
CLK3-214ENST00000564096 SLC35E3Q7Z769 313 aa10.17□□□□□ -0.78
CLK3-214ENST00000564096 ZNF546Q86UE3 836 aa10.17□□□□□ -0.78
CLK3-214ENST00000564096 OR2C3Q8N628 320 aa10.17□□□□□ -0.78
CLK3-214ENST00000564096 TMEM68Q96MH6 324 aa10.17□□□□□ -0.78
CLK3-214ENST00000564096 GSX1Q9H4S2 264 aaPredicted RBP10.17□□□□□ -0.78
CLK3-214ENST00000564096 MAP1AP78559 2803 aaPredicted RBP10.17□□□□□ -0.78
CLK3-214ENST00000564096 H0YIZ8 118 aa10.16□□□□□ -0.78
CLK3-214ENST00000564096 H3BP45 60 aa10.16□□□□□ -0.78
CLK3-214ENST00000564096 BOLA2-SMG1P6H3BVE0 249 aa10.16□□□□□ -0.78
CLK3-214ENST00000564096 TRIM77I1YAP6 450 aa10.16□□□□□ -0.78
CLK3-214ENST00000564096 FCN1O00602 326 aa10.16□□□□□ -0.78
CLK3-214ENST00000564096 TSPAN9O75954 239 aa10.16□□□□□ -0.78
CLK3-214ENST00000564096 OR8U8P0C7N1 319 aa10.16□□□□□ -0.78
CLK3-214ENST00000564096 MYOD1P15172 320 aa10.16□□□□□ -0.78
CLK3-214ENST00000564096 NPY1RP25929 384 aa10.16□□□□□ -0.78
CLK3-214ENST00000564096 VDAC2P45880 294 aaPredicted RBP10.16□□□□□ -0.78
CLK3-214ENST00000564096 HILS1P60008 231 aa10.16□□□□□ -0.78
CLK3-214ENST00000564096 RAB11AP62491 216 aa10.16□□□□□ -0.78
CLK3-214ENST00000564096 TMEM267Q0VDI3 215 aaPredicted RBP10.16□□□□□ -0.78
CLK3-214ENST00000564096 Q5BKY6 102 aa10.16□□□□□ -0.78
CLK3-214ENST00000564096 SPANXN5Q5MJ07 72 aa10.16□□□□□ -0.78
CLK3-214ENST00000564096 OR1L6Q8NGR2 347 aa10.16□□□□□ -0.78
CLK3-214ENST00000564096 AQP10Q96PS8 301 aa10.16□□□□□ -0.78
CLK3-214ENST00000564096 MFFQ9GZY8 342 aa10.16□□□□□ -0.78
CLK3-214ENST00000564096 PAIP2BQ9ULR5 123 aaKnown RBP10.16□□□□□ -0.78
CLK3-214ENST00000564096 TNFSF18Q9UNG2 199 aa10.16□□□□□ -0.78
CLK3-214ENST00000564096 HIVEP2P31629 2446 aa10.16□□□□□ -0.78
CLK3-214ENST00000564096 NAV3Q8IVL0 2385 aa10.16□□□□□ -0.78
CLK3-214ENST00000564096 ZANQ9Y493 2812 aa10.15□□□□□ -0.78
CLK3-214ENST00000564096 IGLC7A0M8Q6 106 aa10.15□□□□□ -0.78
CLK3-214ENST00000564096 MSGN1A6NI15 193 aa10.15□□□□□ -0.78
CLK3-214ENST00000564096 TEX22C9J3V5 150 aa10.15□□□□□ -0.78
CLK3-214ENST00000564096 AP4M1O00189 453 aa10.15□□□□□ -0.78
CLK3-214ENST00000564096 CORTO00230 105 aa10.15□□□□□ -0.78
CLK3-214ENST00000564096 ATP6V0E1O15342 81 aa10.15□□□□□ -0.78
CLK3-214ENST00000564096 CRLF1O75462 422 aa10.15□□□□□ -0.78
CLK3-214ENST00000564096 OR13C7P0DN81 318 aa10.15□□□□□ -0.78
CLK3-214ENST00000564096 RPL12P30050 165 aaKnown RBP10.15□□□□□ -0.78
CLK3-214ENST00000564096 SULT1A1P50225 295 aa10.15□□□□□ -0.78
CLK3-214ENST00000564096 HBG1P69891 147 aa10.15□□□□□ -0.78
CLK3-214ENST00000564096 HBG2P69892 147 aa10.15□□□□□ -0.78
CLK3-214ENST00000564096 SSBP2P81877 361 aaPredicted RBP10.15□□□□□ -0.78
CLK3-214ENST00000564096 NDPQ00604 133 aa10.15□□□□□ -0.78
CLK3-214ENST00000564096 OR2F1Q13607 317 aa10.15□□□□□ -0.78
CLK3-214ENST00000564096 ECSCRQ19T08 205 aa10.15□□□□□ -0.78
CLK3-214ENST00000564096 ACOT7LQ6ZUV0 252 aa10.15□□□□□ -0.78
CLK3-214ENST00000564096 ZNF114Q8NC26 417 aa10.15□□□□□ -0.78
CLK3-214ENST00000564096 SGMS2Q8NHU3 365 aa10.15□□□□□ -0.78
CLK3-214ENST00000564096 HSPB9Q9BQS6 159 aa10.15□□□□□ -0.78
CLK3-214ENST00000564096 RNF126Q9BV68 326 aa10.15□□□□□ -0.78
CLK3-214ENST00000564096 PRSS22Q9GZN4 317 aa10.15□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms