RNA–Protein interactions for RNA: ENST00000560541.5

CUX1-218, Transcript of cut like homeobox 1, humanhuman

TSL 5

Gene CUX1, Length 3,176 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-218ENST00000560541 ZNF766Q5HY98 468 aa9.41□□□□□ -0.9
CUX1-218ENST00000560541 C1orf210Q8IVY1 113 aa9.41□□□□□ -0.9
CUX1-218ENST00000560541 NEIL1Q96FI4 390 aaPredicted RBP9.41□□□□□ -0.9
CUX1-218ENST00000560541 CDX2Q99626 313 aaPredicted RBP9.41□□□□□ -0.9
CUX1-218ENST00000560541 PYGO2Q9BRQ0 406 aa9.41□□□□□ -0.9
CUX1-218ENST00000560541 ARRDC1-AS1Q9H2J1 176 aa9.41□□□□□ -0.9
CUX1-218ENST00000560541 FBXL7Q9UJT9 491 aa9.41□□□□□ -0.9
CUX1-218ENST00000560541 KLRC4-KLRK1H3BQV0 150 aa9.41□□□□□ -0.9
CUX1-218ENST00000560541 WISP2O76076 250 aa9.41□□□□□ -0.9
CUX1-218ENST00000560541 CENPVQ7Z7K6 275 aaPredicted RBP9.41□□□□□ -0.9
CUX1-218ENST00000560541 HEATR1Q9H583 2144 aaKnown RBP9.41□□□□□ -0.9
CUX1-218ENST00000560541 TRGV5A0A0B4J1U4 118 aa9.4□□□□□ -0.9
CUX1-218ENST00000560541 OOEPA6NGQ2 149 aa9.4□□□□□ -0.9
CUX1-218ENST00000560541 F2Z2F3 143 aa9.4□□□□□ -0.9
CUX1-218ENST00000560541 SERF1AO75920 110 aa9.4□□□□□ -0.9
CUX1-218ENST00000560541 NDUFB4O95168 129 aa9.4□□□□□ -0.9
CUX1-218ENST00000560541 FABP6P51161 128 aa9.4□□□□□ -0.9
CUX1-218ENST00000560541 CNEP1R1Q8N9A8 125 aa9.4□□□□□ -0.9
CUX1-218ENST00000560541 OR5AU1Q8NGC0 362 aa9.4□□□□□ -0.9
CUX1-218ENST00000560541 OR4B1Q8NGF8 309 aa9.4□□□□□ -0.9
CUX1-218ENST00000560541 ST6GALNAC6Q969X2 333 aa9.4□□□□□ -0.9
CUX1-218ENST00000560541 IMMP2LQ96T52 175 aa9.4□□□□□ -0.9
CUX1-218ENST00000560541 KLF13Q9Y2Y9 288 aaPredicted RBP9.4□□□□□ -0.9
CUX1-218ENST00000560541 DCHS1Q96JQ0 3298 aa9.4□□□□□ -0.9
CUX1-218ENST00000560541 CLDN14O95500 239 aa9.4□□□□□ -0.9
CUX1-218ENST00000560541 C1QTNF9P0C862 333 aa9.4□□□□□ -0.9
CUX1-218ENST00000560541 PAX2Q02962 417 aa9.4□□□□□ -0.9
CUX1-218ENST00000560541 EIF4EBP1Q13541 118 aaPredicted RBP9.4□□□□□ -0.9
CUX1-218ENST00000560541 TMEM164Q5U3C3 297 aa9.4□□□□□ -0.9
CUX1-218ENST00000560541 ZNF114Q8NC26 417 aa9.4□□□□□ -0.9
CUX1-218ENST00000560541 HCFC1P51610 2035 aa9.4□□□□□ -0.9
CUX1-218ENST00000560541 OR9G9P0C7N8 305 aa9.4□□□□□ -0.91
CUX1-218ENST00000560541 AZU1P20160 251 aa9.4□□□□□ -0.91
CUX1-218ENST00000560541 GNB1P62873 340 aa9.4□□□□□ -0.91
CUX1-218ENST00000560541 TMEM144Q7Z5S9 345 aa9.4□□□□□ -0.91
CUX1-218ENST00000560541 BAGE3Q86Y29 109 aa9.4□□□□□ -0.91
CUX1-218ENST00000560541 BAGE2Q86Y30 109 aa9.4□□□□□ -0.91
CUX1-218ENST00000560541 C11orf53Q8IXP5 236 aa9.4□□□□□ -0.91
CUX1-218ENST00000560541 RYDENQ9NUL5 291 aaKnown RBP9.4□□□□□ -0.91
CUX1-218ENST00000560541 COL27A1Q8IZC6 1860 aaPredicted RBP9.4□□□□□ -0.91
CUX1-218ENST00000560541 C15orf62A8K5M9 175 aa9.39□□□□□ -0.91
CUX1-218ENST00000560541 FCGR3BO75015 233 aa9.39□□□□□ -0.91
CUX1-218ENST00000560541 MT-CO2P00403 227 aa9.39□□□□□ -0.91
CUX1-218ENST00000560541 KRTCAP3Q53RY4 240 aa9.39□□□□□ -0.91
CUX1-218ENST00000560541 TGIF2LYQ8IUE0 185 aa9.39□□□□□ -0.91
CUX1-218ENST00000560541 C1orf174Q8IYL3 243 aa9.39□□□□□ -0.91
CUX1-218ENST00000560541 OR8I2Q8N0Y5 310 aa9.39□□□□□ -0.91
CUX1-218ENST00000560541 MDS2Q8NDY4 140 aa9.39□□□□□ -0.91
CUX1-218ENST00000560541 OR4S2Q8NH73 311 aa9.39□□□□□ -0.91
CUX1-218ENST00000560541 IQCF6A8MYZ5 107 aa9.39□□□□□ -0.91
CUX1-218ENST00000560541 RBFOX2O43251 390 aaKnown RBP eCLIP9.39□□□□□ -0.915e-7■■■■□ 21.4
CUX1-218ENST00000560541 RELBQ01201 579 aa9.39□□□□□ -0.91
CUX1-218ENST00000560541 PRAMEF5Q5TYX0 476 aa9.39□□□□□ -0.91
CUX1-218ENST00000560541 BDP1A6H8Y1 2624 aa9.39□□□□□ -0.91
CUX1-218ENST00000560541 TIMM8AO60220 97 aaPredicted RBP9.38□□□□□ -0.91
CUX1-218ENST00000560541 IL3RAP26951 378 aa9.38□□□□□ -0.91
CUX1-218ENST00000560541 CD1BP29016 333 aa9.38□□□□□ -0.91
CUX1-218ENST00000560541 SELENOVP59797 346 aa9.38□□□□□ -0.91
CUX1-218ENST00000560541 ACP7Q6ZNF0 438 aa9.38□□□□□ -0.91
CUX1-218ENST00000560541 Q8N7P7 452 aa9.38□□□□□ -0.91
CUX1-218ENST00000560541 FER1L6-AS1Q8NA97 138 aa9.38□□□□□ -0.91
CUX1-218ENST00000560541 ZBTB34Q8NCN2 500 aa9.38□□□□□ -0.91
CUX1-218ENST00000560541 THYN1Q9P016 225 aa9.38□□□□□ -0.91
CUX1-218ENST00000560541 CEP250Q9BV73 2442 aa9.38□□□□□ -0.91
CUX1-218ENST00000560541 A0A1W2PPV4 95 aa9.38□□□□□ -0.91
CUX1-218ENST00000560541 C17orf112F2Z3M2 114 aa9.38□□□□□ -0.91
CUX1-218ENST00000560541 TOX4O94842 621 aa9.38□□□□□ -0.91
CUX1-218ENST00000560541 PPIAL4GP0DN37 164 aa9.38□□□□□ -0.91
CUX1-218ENST00000560541 TGFBR3Q03167 851 aa9.38□□□□□ -0.91
CUX1-218ENST00000560541 FOXF2Q12947 444 aa9.38□□□□□ -0.91
CUX1-218ENST00000560541 MORN2Q502X0 79 aa9.38□□□□□ -0.91
CUX1-218ENST00000560541 SLC35E4Q6ICL7 350 aa9.38□□□□□ -0.91
CUX1-218ENST00000560541 DHRS13Q6UX07 377 aa9.38□□□□□ -0.91
CUX1-218ENST00000560541 WDR82Q6UXN9 313 aa9.38□□□□□ -0.91
CUX1-218ENST00000560541 OR1B1Q8NGR6 318 aa9.38□□□□□ -0.91
CUX1-218ENST00000560541 ANAPC16Q96DE5 110 aa9.38□□□□□ -0.91
CUX1-218ENST00000560541 ATP6V0BQ99437 205 aa9.38□□□□□ -0.91
CUX1-218ENST00000560541 HES4Q9HCC6 221 aa9.38□□□□□ -0.91
CUX1-218ENST00000560541 ADMP35318 185 aa9.38□□□□□ -0.91
CUX1-218ENST00000560541 ARF6P62330 175 aa9.38□□□□□ -0.91
CUX1-218ENST00000560541 RHOGP84095 191 aa9.38□□□□□ -0.91
CUX1-218ENST00000560541 ODF1Q14990 250 aa9.38□□□□□ -0.91
CUX1-218ENST00000560541 LCN12Q6JVE5 192 aa9.38□□□□□ -0.91
CUX1-218ENST00000560541 TRIB1Q96RU8 372 aa9.38□□□□□ -0.91
CUX1-218ENST00000560541 ELOVL5Q9NYP7 299 aa9.38□□□□□ -0.91
CUX1-218ENST00000560541 WASHC3Q9Y3C0 194 aa9.38□□□□□ -0.91
CUX1-218ENST00000560541 TRAV3A0A0B4J244 114 aa9.37□□□□□ -0.91
CUX1-218ENST00000560541 RRHO14718 337 aa9.37□□□□□ -0.91
CUX1-218ENST00000560541 ARL14EPLP0DKL9 152 aa9.37□□□□□ -0.91
CUX1-218ENST00000560541 PMCHP20382 165 aa9.37□□□□□ -0.91
CUX1-218ENST00000560541 CTRLP40313 264 aa9.37□□□□□ -0.91
CUX1-218ENST00000560541 PPOXP50336 477 aa9.37□□□□□ -0.91
CUX1-218ENST00000560541 GABRA6Q16445 453 aa9.37□□□□□ -0.91
CUX1-218ENST00000560541 TMEM177Q53S58 311 aa9.37□□□□□ -0.91
CUX1-218ENST00000560541 SSMEM1Q8WWF3 244 aa9.37□□□□□ -0.91
CUX1-218ENST00000560541 TAAR6Q96RI8 345 aa9.37□□□□□ -0.91
CUX1-218ENST00000560541 HEYLQ9NQ87 328 aaPredicted RBP9.37□□□□□ -0.91
CUX1-218ENST00000560541 GNG12Q9UBI6 72 aa9.37□□□□□ -0.91
CUX1-218ENST00000560541 INTS1Q8N201 2190 aaKnown RBP9.37□□□□□ -0.91
CUX1-218ENST00000560541 SPAARA0A1B0GVQ0 90 aa9.37□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms