RNA–Protein interactions for RNA: ENST00000557307.1

SYNE2-227, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 4

Gene SYNE2, Length 526 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-227ENST00000557307 HRH1P35367 487 aa8.16□□□□□ -1.1
SYNE2-227ENST00000557307 G6PCP35575 357 aa8.16□□□□□ -1.1
SYNE2-227ENST00000557307 LPAR6P43657 344 aa8.16□□□□□ -1.1
SYNE2-227ENST00000557307 HERV-K104P61576 105 aa8.16□□□□□ -1.1
SYNE2-227ENST00000557307 CATR1Q13166 79 aa8.16□□□□□ -1.1
SYNE2-227ENST00000557307 PHLDA2Q53GA4 152 aa8.16□□□□□ -1.1
SYNE2-227ENST00000557307 RNASE12Q5GAN4 147 aaKnown RBP8.16□□□□□ -1.1
SYNE2-227ENST00000557307 TMEM69Q5SWH9 247 aa8.16□□□□□ -1.1
SYNE2-227ENST00000557307 DHRS11Q6UWP2 260 aa8.16□□□□□ -1.1
SYNE2-227ENST00000557307 ZBTB34Q8NCN2 500 aa8.16□□□□□ -1.1
SYNE2-227ENST00000557307 DMBX1Q8NFW5 382 aa8.16□□□□□ -1.1
SYNE2-227ENST00000557307 CHRDL1Q9BU40 450 aa8.16□□□□□ -1.1
SYNE2-227ENST00000557307 NAA50Q9GZZ1 169 aaKnown RBP8.16□□□□□ -1.1
SYNE2-227ENST00000557307 PLEKHA2Q9HB19 425 aa8.16□□□□□ -1.1
SYNE2-227ENST00000557307 OR2T8A6NH00 312 aa8.15□□□□□ -1.1
SYNE2-227ENST00000557307 OR13C7P0DN81 318 aa8.15□□□□□ -1.1
SYNE2-227ENST00000557307 HIST1H1BP16401 226 aaKnown RBP8.15□□□□□ -1.1
SYNE2-227ENST00000557307 F2RP25116 425 aa8.15□□□□□ -1.1
SYNE2-227ENST00000557307 ADMP35318 185 aa8.15□□□□□ -1.1
SYNE2-227ENST00000557307 CBX5P45973 191 aa8.15□□□□□ -1.1
SYNE2-227ENST00000557307 VBP1P61758 197 aa8.15□□□□□ -1.1
SYNE2-227ENST00000557307 EWSR1Q01844 656 aaKnown RBP eCLIP8.15□□□□□ -1.1
SYNE2-227ENST00000557307 FAM209BQ5JX69 171 aa8.15□□□□□ -1.1
SYNE2-227ENST00000557307 ZNF57Q68EA5 555 aaPredicted RBP8.15□□□□□ -1.1
SYNE2-227ENST00000557307 LAX1Q8IWV1 398 aa8.15□□□□□ -1.1
SYNE2-227ENST00000557307 GDPD1Q8N9F7 314 aa8.15□□□□□ -1.1
SYNE2-227ENST00000557307 TSPAN14Q8NG11 270 aa8.15□□□□□ -1.1
SYNE2-227ENST00000557307 OR5H2Q8NGV7 314 aa8.15□□□□□ -1.1
SYNE2-227ENST00000557307 GPX8Q8TED1 209 aa8.15□□□□□ -1.1
SYNE2-227ENST00000557307 S100A16Q96FQ6 103 aaKnown RBP8.15□□□□□ -1.1
SYNE2-227ENST00000557307 FUNDC2Q9BWH2 189 aa8.15□□□□□ -1.1
SYNE2-227ENST00000557307 HINT2Q9BX68 163 aa8.15□□□□□ -1.1
SYNE2-227ENST00000557307 QTRT1Q9BXR0 403 aaKnown RBP8.15□□□□□ -1.1
SYNE2-227ENST00000557307 COMMD5Q9GZQ3 224 aa8.15□□□□□ -1.1
SYNE2-227ENST00000557307 NDUFA4L2Q9NRX3 87 aa8.15□□□□□ -1.1
SYNE2-227ENST00000557307 COMMD9Q9P000 198 aa8.15□□□□□ -1.1
SYNE2-227ENST00000557307 COMMD3Q9UBI1 195 aa8.15□□□□□ -1.1
SYNE2-227ENST00000557307 K7EIM0 57 aa8.14□□□□□ -1.11
SYNE2-227ENST00000557307 TGOLN2O43493 480 aa8.14□□□□□ -1.11
SYNE2-227ENST00000557307 ZNF207O43670 478 aaKnown RBP8.14□□□□□ -1.11
SYNE2-227ENST00000557307 HPGDSO60760 199 aa8.14□□□□□ -1.11
SYNE2-227ENST00000557307 KRASP01116 189 aa8.14□□□□□ -1.11
SYNE2-227ENST00000557307 SERPINE2P07093 398 aa8.14□□□□□ -1.11
SYNE2-227ENST00000557307 C8orf88P0DMB2 117 aa8.14□□□□□ -1.11
SYNE2-227ENST00000557307 ELK1P19419 428 aa8.14□□□□□ -1.11
SYNE2-227ENST00000557307 IZUMO4Q1ZYL8 232 aa8.14□□□□□ -1.11
SYNE2-227ENST00000557307 SNX29P2Q8IUI4 249 aa8.14□□□□□ -1.11
SYNE2-227ENST00000557307 SLC25A46Q96AG3 418 aa8.14□□□□□ -1.11
SYNE2-227ENST00000557307 ZNF436Q9C0F3 470 aaPredicted RBP8.14□□□□□ -1.11
SYNE2-227ENST00000557307 SLC2A8Q9NY64 477 aa8.14□□□□□ -1.11
SYNE2-227ENST00000557307 TECRQ9NZ01 308 aaKnown RBP8.14□□□□□ -1.11
SYNE2-227ENST00000557307 UBQLN2Q9UHD9 624 aa8.14□□□□□ -1.11
SYNE2-227ENST00000557307 F11RQ9Y624 299 aaKnown RBP8.14□□□□□ -1.11
SYNE2-227ENST00000557307 FRAS1Q86XX4 4008 aa8.14□□□□□ -1.11
SYNE2-227ENST00000557307 TRBV7-1A0A0A6YYK4 115 aa8.13□□□□□ -1.11
SYNE2-227ENST00000557307 M0QYG6 137 aa8.13□□□□□ -1.11
SYNE2-227ENST00000557307 IGHV3-48P01763 117 aa8.13□□□□□ -1.11
SYNE2-227ENST00000557307 TRAPPC2P0DI81 140 aa8.13□□□□□ -1.11
SYNE2-227ENST00000557307 TRAPPC2BP0DI82 140 aa8.13□□□□□ -1.11
SYNE2-227ENST00000557307 SMIM18P0DKX4 95 aa8.13□□□□□ -1.11
SYNE2-227ENST00000557307 PTBP1P26599 531 aaKnown RBP eCLIP8.13□□□□□ -1.11
SYNE2-227ENST00000557307 PRSS3P35030 304 aa8.13□□□□□ -1.11
SYNE2-227ENST00000557307 SLC25A24Q6NUK1 477 aa8.13□□□□□ -1.11
SYNE2-227ENST00000557307 TBC1D26Q86UD7 250 aa8.13□□□□□ -1.11
SYNE2-227ENST00000557307 OR52B4Q8NGK2 314 aa8.13□□□□□ -1.11
SYNE2-227ENST00000557307 SCARB1Q8WTV0 552 aa8.13□□□□□ -1.11
SYNE2-227ENST00000557307 TMEM190Q8WZ59 177 aa8.13□□□□□ -1.11
SYNE2-227ENST00000557307 DGCR14Q96DF8 476 aaKnown RBP8.13□□□□□ -1.11
SYNE2-227ENST00000557307 CXorf58Q96LI9 332 aa8.13□□□□□ -1.11
SYNE2-227ENST00000557307 OR51B2Q9Y5P1 312 aa8.13□□□□□ -1.11
SYNE2-227ENST00000557307 A0A087WXM4 84 aa8.12□□□□□ -1.11
SYNE2-227ENST00000557307 C15orf61A6NNL5 157 aa8.12□□□□□ -1.11
SYNE2-227ENST00000557307 GPR31O00270 319 aa8.12□□□□□ -1.11
SYNE2-227ENST00000557307 DHFRP00374 187 aa8.12□□□□□ -1.11
SYNE2-227ENST00000557307 TAS2R46P59540 309 aa8.12□□□□□ -1.11
SYNE2-227ENST00000557307 ZNF124Q15973 351 aa8.12□□□□□ -1.11
SYNE2-227ENST00000557307 ODF3L2Q3SX64 289 aa8.12□□□□□ -1.11
SYNE2-227ENST00000557307 FAM106AQ4KMX7 169 aa8.12□□□□□ -1.11
SYNE2-227ENST00000557307 SPINK9Q5DT21 86 aa8.12□□□□□ -1.11
SYNE2-227ENST00000557307 PLET1Q6UQ28 207 aa8.12□□□□□ -1.11
SYNE2-227ENST00000557307 UBAC2Q8NBM4 344 aa8.12□□□□□ -1.11
SYNE2-227ENST00000557307 OR1L8Q8NGR8 309 aa8.12□□□□□ -1.11
SYNE2-227ENST00000557307 LSM10Q969L4 123 aaKnown RBP8.12□□□□□ -1.11
SYNE2-227ENST00000557307 SEC22AQ96IW7 307 aa8.12□□□□□ -1.11
SYNE2-227ENST00000557307 OVOL2Q9BRP0 275 aa8.12□□□□□ -1.11
SYNE2-227ENST00000557307 KMT2AQ03164 3969 aa8.12□□□□□ -1.11
SYNE2-227ENST00000557307 IGHV3-49A0A0A0MS15 119 aa8.11□□□□□ -1.11
SYNE2-227ENST00000557307 TMEM127O75204 238 aa8.11□□□□□ -1.11
SYNE2-227ENST00000557307 TNFAIP8O95379 198 aa8.11□□□□□ -1.11
SYNE2-227ENST00000557307 IFNA6P05013 189 aa8.11□□□□□ -1.11
SYNE2-227ENST00000557307 PI3P19957 117 aa8.11□□□□□ -1.11
SYNE2-227ENST00000557307 ERVK-16P61578 105 aa8.11□□□□□ -1.11
SYNE2-227ENST00000557307 CROCCP3Q8IVE0 287 aa8.11□□□□□ -1.11
SYNE2-227ENST00000557307 OR6F1Q8NGZ6 308 aa8.11□□□□□ -1.11
SYNE2-227ENST00000557307 CD300LFQ8TDQ1 290 aa8.11□□□□□ -1.11
SYNE2-227ENST00000557307 VN1R17PQ8TDU5 208 aa8.11□□□□□ -1.11
SYNE2-227ENST00000557307 MRGPRFQ96AM1 343 aa8.11□□□□□ -1.11
SYNE2-227ENST00000557307 SRSF8Q9BRL6 282 aaKnown RBP8.11□□□□□ -1.11
SYNE2-227ENST00000557307 TMEM14BQ9NUH8 114 aa8.11□□□□□ -1.11
SYNE2-227ENST00000557307 IGKV1-5P01602 117 aa8.1□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 49.1 ms