RNA–Protein interactions for RNA: ENST00000516428.1

RNU4-54P-201, Transcript of RNA, U4 small nuclear 54, pseudogene, humanhuman

BASIC

Gene RNU4-54P, Length 129 nt, Biotype snRNA, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU4-54P-201ENST00000516428 ZNF705DP0CH99 300 aaPredicted RBP0.4□□□□□ -2.35
RNU4-54P-201ENST00000516428 SMIM17P0DL12 118 aa0.4□□□□□ -2.35
RNU4-54P-201ENST00000516428 BCL2P10415 239 aa0.4□□□□□ -2.35
RNU4-54P-201ENST00000516428 ZNF823P16415 610 aa0.4□□□□□ -2.35
RNU4-54P-201ENST00000516428 ZNF32P17041 273 aa0.4□□□□□ -2.35
RNU4-54P-201ENST00000516428 RPL7P18124 248 aaKnown RBP0.4□□□□□ -2.35
RNU4-54P-201ENST00000516428 RPS3P23396 243 aaKnown RBP eCLIP0.4□□□□□ -2.35
RNU4-54P-201ENST00000516428 NPPCP23582 126 aa0.4□□□□□ -2.35
RNU4-54P-201ENST00000516428 NPY1RP25929 384 aa0.4□□□□□ -2.35
RNU4-54P-201ENST00000516428 S100A4P26447 101 aaKnown RBP0.4□□□□□ -2.35
RNU4-54P-201ENST00000516428 CASP1P29466 404 aa0.4□□□□□ -2.35
RNU4-54P-201ENST00000516428 CMPK1P30085 196 aa0.4□□□□□ -2.35
RNU4-54P-201ENST00000516428 S100A7P31151 101 aa0.4□□□□□ -2.35
RNU4-54P-201ENST00000516428 S100A11P31949 105 aa0.4□□□□□ -2.35
RNU4-54P-201ENST00000516428 SDC2P34741 201 aa0.4□□□□□ -2.35
RNU4-54P-201ENST00000516428 MPV17P39210 176 aa0.4□□□□□ -2.35
RNU4-54P-201ENST00000516428 RPL27AP46776 148 aaKnown RBP0.4□□□□□ -2.35
RNU4-54P-201ENST00000516428 GABRA2P47869 451 aa0.4□□□□□ -2.35
RNU4-54P-201ENST00000516428 CXCL12P48061 93 aa0.4□□□□□ -2.35
RNU4-54P-201ENST00000516428 ATP5G3P48201 142 aa0.4□□□□□ -2.35
RNU4-54P-201ENST00000516428 RAB5CP51148 216 aa0.4□□□□□ -2.35
RNU4-54P-201ENST00000516428 RAB13P51153 203 aa0.4□□□□□ -2.35
RNU4-54P-201ENST00000516428 DAPP51397 102 aa0.4□□□□□ -2.35
RNU4-54P-201ENST00000516428 CRISP3P54108 245 aa0.4□□□□□ -2.35
RNU4-54P-201ENST00000516428 KLF3P57682 345 aaPredicted RBP0.4□□□□□ -2.35
RNU4-54P-201ENST00000516428 LINC00313P59037 77 aa0.4□□□□□ -2.35
RNU4-54P-201ENST00000516428 TAS2R20P59543 309 aa0.4□□□□□ -2.35
RNU4-54P-201ENST00000516428 KRTAP10-3P60369 221 aa0.4□□□□□ -2.35
RNU4-54P-201ENST00000516428 YPEL3P61236 119 aaPredicted RBP0.4□□□□□ -2.35
RNU4-54P-201ENST00000516428 RRAS2P62070 204 aaPredicted RBP0.4□□□□□ -2.35
RNU4-54P-201ENST00000516428 RPS11P62280 158 aaKnown RBP eCLIP0.4□□□□□ -2.35
RNU4-54P-201ENST00000516428 HIST1H4AP62805 103 aaKnown RBP0.4□□□□□ -2.35
RNU4-54P-201ENST00000516428 SELENOWP63302 87 aa0.4□□□□□ -2.35
RNU4-54P-201ENST00000516428 HBA1P69905 142 aa0.4□□□□□ -2.35
RNU4-54P-201ENST00000516428 ELF3P78545 371 aaPredicted RBP0.4□□□□□ -2.35
RNU4-54P-201ENST00000516428 CCL20P78556 96 aa0.4□□□□□ -2.35
RNU4-54P-201ENST00000516428 IGLV3-21P80748 117 aaPredicted RBP0.4□□□□□ -2.35
RNU4-54P-201ENST00000516428 AKR1C1Q04828 323 aa0.4□□□□□ -2.35
RNU4-54P-201ENST00000516428 ZNF616Q08AN1 781 aa0.4□□□□□ -2.35
RNU4-54P-201ENST00000516428 PLCXD2Q0VAA5 305 aa0.4□□□□□ -2.35
RNU4-54P-201ENST00000516428 BAMBIQ13145 260 aa0.4□□□□□ -2.35
RNU4-54P-201ENST00000516428 EIF3IQ13347 325 aaKnown RBP0.4□□□□□ -2.35
RNU4-54P-201ENST00000516428 PDGFRLQ15198 375 aa0.4□□□□□ -2.35
RNU4-54P-201ENST00000516428 MSMO1Q15800 293 aa0.4□□□□□ -2.35
RNU4-54P-201ENST00000516428 IL17AQ16552 155 aa0.4□□□□□ -2.35
RNU4-54P-201ENST00000516428 TAF9Q16594 264 aa0.4□□□□□ -2.35
RNU4-54P-201ENST00000516428 LTC4SQ16873 150 aa0.4□□□□□ -2.35
RNU4-54P-201ENST00000516428 RTL8BQ17RB0 113 aa0.4□□□□□ -2.35
RNU4-54P-201ENST00000516428 VMA21Q3ZAQ7 101 aa0.4□□□□□ -2.35
RNU4-54P-201ENST00000516428 MRPL51Q4U2R6 128 aaKnown RBP0.4□□□□□ -2.35
RNU4-54P-201ENST00000516428 C2orf83Q53S99 150 aa0.4□□□□□ -2.35
RNU4-54P-201ENST00000516428 RNASE13Q5GAN3 156 aaKnown RBP0.4□□□□□ -2.35
RNU4-54P-201ENST00000516428 RNASE10Q5GAN6 216 aaKnown RBP0.4□□□□□ -2.35
RNU4-54P-201ENST00000516428 SPANXN3Q5MJ09 141 aa0.4□□□□□ -2.35
RNU4-54P-201ENST00000516428 DNLZQ5SXM8 178 aa0.4□□□□□ -2.35
RNU4-54P-201ENST00000516428 C9orf129Q5T035 196 aaKnown RBP0.4□□□□□ -2.35
RNU4-54P-201ENST00000516428 BCL2L15Q5TBC7 163 aa0.4□□□□□ -2.35
RNU4-54P-201ENST00000516428 HES3Q5TGS1 186 aa0.4□□□□□ -2.35
RNU4-54P-201ENST00000516428 FKBP1CQ5VVH2 108 aa0.4□□□□□ -2.35
RNU4-54P-201ENST00000516428 CYB5R2Q6BCY4 276 aa0.4□□□□□ -2.35
RNU4-54P-201ENST00000516428 RPL22L1Q6P5R6 122 aaKnown RBP0.4□□□□□ -2.35
RNU4-54P-201ENST00000516428 SLC25A34Q6PIV7 304 aa0.4□□□□□ -2.35
RNU4-54P-201ENST00000516428 UNQ9165/PRO28630Q6UXU0 137 aa0.4□□□□□ -2.35
RNU4-54P-201ENST00000516428 C4orf22Q6V702 233 aa0.4□□□□□ -2.35
RNU4-54P-201ENST00000516428 NTM-AS1Q6ZSK4 140 aa0.4□□□□□ -2.35
RNU4-54P-201ENST00000516428 SSX8Q7RTT4 187 aa0.4□□□□□ -2.35
RNU4-54P-201ENST00000516428 SCXQ7RTU7 201 aa0.4□□□□□ -2.35
RNU4-54P-201ENST00000516428 TRAPPC6BQ86SZ2 158 aa0.4□□□□□ -2.35
RNU4-54P-201ENST00000516428 WDR86Q86TI4 376 aa0.4□□□□□ -2.35
RNU4-54P-201ENST00000516428 GPHB5Q86YW7 130 aa0.4□□□□□ -2.35
RNU4-54P-201ENST00000516428 IFT20Q8IY31 132 aa0.4□□□□□ -2.35
RNU4-54P-201ENST00000516428 AMN1Q8IY45 258 aa0.4□□□□□ -2.35
RNU4-54P-201ENST00000516428 TCTE3Q8IZS6 198 aa0.4□□□□□ -2.35
RNU4-54P-201ENST00000516428 CEND1Q8N111 149 aa0.4□□□□□ -2.35
RNU4-54P-201ENST00000516428 LYPD1Q8N2G4 141 aa0.4□□□□□ -2.35
RNU4-54P-201ENST00000516428 TMEM86AQ8N2M4 240 aa0.4□□□□□ -2.35
RNU4-54P-201ENST00000516428 RPRMLQ8N4K4 120 aa0.4□□□□□ -2.35
RNU4-54P-201ENST00000516428 C12orf45Q8N5I9 185 aaPredicted RBP0.4□□□□□ -2.35
RNU4-54P-201ENST00000516428 C3orf22Q8N5N4 141 aa0.4□□□□□ -2.35
RNU4-54P-201ENST00000516428 KRTCAP2Q8N6L1 136 aa0.4□□□□□ -2.35
RNU4-54P-201ENST00000516428 ZNF645Q8N7E2 425 aa0.4□□□□□ -2.35
RNU4-54P-201ENST00000516428 ZNF433Q8N7K0 673 aaPredicted RBP0.4□□□□□ -2.35
RNU4-54P-201ENST00000516428 YIPF7Q8N8F6 280 aa0.4□□□□□ -2.35
RNU4-54P-201ENST00000516428 C15orf56Q8N910 161 aa0.4□□□□□ -2.35
RNU4-54P-201ENST00000516428 ZNF709Q8N972 641 aa0.4□□□□□ -2.35
RNU4-54P-201ENST00000516428 TMEM229BQ8NBD8 167 aa0.4□□□□□ -2.35
RNU4-54P-201ENST00000516428 SUMF2Q8NBJ7 301 aa0.4□□□□□ -2.35
RNU4-54P-201ENST00000516428 APCDD1LQ8NCL9 501 aa0.4□□□□□ -2.35
RNU4-54P-201ENST00000516428 OR52R1Q8NGF1 315 aa0.4□□□□□ -2.35
RNU4-54P-201ENST00000516428 OR10D4PQ8NGN7 298 aa0.4□□□□□ -2.35
RNU4-54P-201ENST00000516428 OR13C4Q8NGS5 318 aa0.4□□□□□ -2.35
RNU4-54P-201ENST00000516428 OR2T4Q8NH00 348 aa0.4□□□□□ -2.35
RNU4-54P-201ENST00000516428 OR4K13Q8NH42 304 aa0.4□□□□□ -2.35
RNU4-54P-201ENST00000516428 OR5W2Q8NH69 310 aa0.4□□□□□ -2.35
RNU4-54P-201ENST00000516428 OR4C6Q8NH72 309 aa0.4□□□□□ -2.35
RNU4-54P-201ENST00000516428 PPTC7Q8NI37 304 aa0.4□□□□□ -2.35
RNU4-54P-201ENST00000516428 FNDC9Q8TBE3 224 aa0.4□□□□□ -2.35
RNU4-54P-201ENST00000516428 SLC25A40Q8TBP6 338 aa0.4□□□□□ -2.35
RNU4-54P-201ENST00000516428 LMX1AQ8TE12 382 aa0.4□□□□□ -2.35
RNU4-54P-201ENST00000516428 ZNF721Q8TF20 911 aa0.4□□□□□ -2.35
Retrieved 100 of 20,778 RNA–protein pairs in 71 ms