RNA–Protein interactions for RNA: ENST00000485618.1

SF3A1-208, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 2

Gene SF3A1, Length 593 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-208ENST00000485618 FAM223BA6NKX1 122 aa6.48□□□□□ -1.37
SF3A1-208ENST00000485618 C15orf61A6NNL5 157 aa6.48□□□□□ -1.37
SF3A1-208ENST00000485618 NPIPB5A8MRT5 1133 aa6.48□□□□□ -1.37
SF3A1-208ENST00000485618 G3V318 75 aa6.48□□□□□ -1.37
SF3A1-208ENST00000485618 PLXNB1O43157 2135 aa6.48□□□□□ -1.37
SF3A1-208ENST00000485618 MED6O75586 246 aa6.48□□□□□ -1.37
SF3A1-208ENST00000485618 DUS4LO95620 317 aaKnown RBP6.48□□□□□ -1.37
SF3A1-208ENST00000485618 HLA-AP01891 365 aaKnown RBP6.48□□□□□ -1.37
SF3A1-208ENST00000485618 TRGV3P03979 118 aa6.48□□□□□ -1.37
SF3A1-208ENST00000485618 OR4E1P0C645 316 aa6.48□□□□□ -1.37
SF3A1-208ENST00000485618 SULT1A3P0DMM9 295 aa6.48□□□□□ -1.37
SF3A1-208ENST00000485618 SULT1A4P0DMN0 295 aa6.48□□□□□ -1.37
SF3A1-208ENST00000485618 EGR2P11161 476 aaPredicted RBP6.48□□□□□ -1.37
SF3A1-208ENST00000485618 PSMB8P28062 276 aa6.48□□□□□ -1.37
SF3A1-208ENST00000485618 PSMB6P28072 239 aa6.48□□□□□ -1.37
SF3A1-208ENST00000485618 PPIFP30405 207 aaKnown RBP6.48□□□□□ -1.37
SF3A1-208ENST00000485618 SNCAP37840 140 aa6.48□□□□□ -1.37
SF3A1-208ENST00000485618 TPPP2P59282 170 aa6.48□□□□□ -1.37
SF3A1-208ENST00000485618 SPCS3P61009 180 aa6.48□□□□□ -1.37
SF3A1-208ENST00000485618 RPL23AP62750 156 aaKnown RBP6.48□□□□□ -1.37
SF3A1-208ENST00000485618 TMEM187Q14656 261 aa6.48□□□□□ -1.37
SF3A1-208ENST00000485618 SMCO1Q147U7 214 aa6.48□□□□□ -1.37
SF3A1-208ENST00000485618 FAM223AQ8IWN6 122 aa6.48□□□□□ -1.37
SF3A1-208ENST00000485618 SLC35G3Q8N808 338 aa6.48□□□□□ -1.37
SF3A1-208ENST00000485618 C11orf44Q8N8P7 122 aa6.48□□□□□ -1.37
SF3A1-208ENST00000485618 LRTM2Q8N967 370 aa6.48□□□□□ -1.37
SF3A1-208ENST00000485618 NECAP1Q8NC96 275 aa6.48□□□□□ -1.37
SF3A1-208ENST00000485618 OR52E5Q8NH55 327 aa6.48□□□□□ -1.37
SF3A1-208ENST00000485618 WIPF2Q8TF74 440 aaPredicted RBP6.48□□□□□ -1.37
SF3A1-208ENST00000485618 DPF1Q92782 380 aa6.48□□□□□ -1.37
SF3A1-208ENST00000485618 CITED2Q99967 270 aaPredicted RBP6.48□□□□□ -1.37
SF3A1-208ENST00000485618 FAM103A1Q9BTL3 118 aaKnown RBP6.48□□□□□ -1.37
SF3A1-208ENST00000485618 C20orf85Q9H1P6 137 aa6.48□□□□□ -1.37
SF3A1-208ENST00000485618 PLEKHA3Q9HB20 300 aa6.48□□□□□ -1.37
SF3A1-208ENST00000485618 NUDT15Q9NV35 164 aa6.48□□□□□ -1.37
SF3A1-208ENST00000485618 NOTCH1P46531 2555 aa6.47□□□□□ -1.37
SF3A1-208ENST00000485618 C9orf170A2RU37 121 aa6.47□□□□□ -1.37
SF3A1-208ENST00000485618 PRAF2O60831 178 aa6.47□□□□□ -1.37
SF3A1-208ENST00000485618 SCGB2A1O75556 95 aa6.47□□□□□ -1.37
SF3A1-208ENST00000485618 IGKV1-5P01602 117 aa6.47□□□□□ -1.37
SF3A1-208ENST00000485618 CRYGCP07315 174 aa6.47□□□□□ -1.37
SF3A1-208ENST00000485618 OR13C7P0DN81 318 aa6.47□□□□□ -1.37
SF3A1-208ENST00000485618 SLC25A6P12236 298 aa6.47□□□□□ -1.37
SF3A1-208ENST00000485618 ATP5IP56385 69 aaPredicted RBP6.47□□□□□ -1.37
SF3A1-208ENST00000485618 RPP30P78346 268 aaKnown RBP6.47□□□□□ -1.37
SF3A1-208ENST00000485618 NDPQ00604 133 aa6.47□□□□□ -1.37
SF3A1-208ENST00000485618 CFHR3Q02985 330 aa6.47□□□□□ -1.37
SF3A1-208ENST00000485618 ATP5G2Q06055 141 aa6.47□□□□□ -1.37
SF3A1-208ENST00000485618 PPP1R1AQ13522 171 aa6.47□□□□□ -1.37
SF3A1-208ENST00000485618 TATDN3Q17R31 274 aa6.47□□□□□ -1.37
SF3A1-208ENST00000485618 LYG2Q86SG7 212 aa6.47□□□□□ -1.37
SF3A1-208ENST00000485618 KLHL30-AS1Q8NEE0 82 aa6.47□□□□□ -1.37
SF3A1-208ENST00000485618 DUSP18Q8NEJ0 188 aa6.47□□□□□ -1.37
SF3A1-208ENST00000485618 TMEM230Q96A57 120 aa6.47□□□□□ -1.37
SF3A1-208ENST00000485618 RBMXL1Q96E39 390 aaKnown RBP6.47□□□□□ -1.37
SF3A1-208ENST00000485618 CXorf58Q96LI9 332 aa6.47□□□□□ -1.37
SF3A1-208ENST00000485618 HIPK2Q9H2X6 1198 aa6.47□□□□□ -1.37
SF3A1-208ENST00000485618 NDUFA4L2Q9NRX3 87 aa6.47□□□□□ -1.37
SF3A1-208ENST00000485618 GAR1Q9NY12 217 aaKnown RBP6.47□□□□□ -1.37
SF3A1-208ENST00000485618 TRAV6A0A075B6T7 132 aa6.46□□□□□ -1.38
SF3A1-208ENST00000485618 TRAV3A0A0B4J244 114 aa6.46□□□□□ -1.38
SF3A1-208ENST00000485618 A0A0B4J293 547 aa6.46□□□□□ -1.38
SF3A1-208ENST00000485618 A0A1W2PRX2 142 aa6.46□□□□□ -1.38
SF3A1-208ENST00000485618 CEBPZOSA8MTT3 80 aa6.46□□□□□ -1.38
SF3A1-208ENST00000485618 CORTO00230 105 aa6.46□□□□□ -1.38
SF3A1-208ENST00000485618 PTTG1O95997 202 aa6.46□□□□□ -1.38
SF3A1-208ENST00000485618 IGKV1-39P01597 117 aa6.46□□□□□ -1.38
SF3A1-208ENST00000485618 PF4P02776 101 aa6.46□□□□□ -1.38
SF3A1-208ENST00000485618 IGKV1D-39P04432 117 aa6.46□□□□□ -1.38
SF3A1-208ENST00000485618 RPLP1P05386 114 aaKnown RBP6.46□□□□□ -1.38
SF3A1-208ENST00000485618 ANXA7P20073 488 aaKnown RBP6.46□□□□□ -1.38
SF3A1-208ENST00000485618 ZP3P21754 424 aa6.46□□□□□ -1.38
SF3A1-208ENST00000485618 BTCP35070 178 aa6.46□□□□□ -1.38
SF3A1-208ENST00000485618 MYCNOSP40205 109 aa6.46□□□□□ -1.38
SF3A1-208ENST00000485618 HOXA1P49639 335 aaPredicted RBP6.46□□□□□ -1.38
SF3A1-208ENST00000485618 SUPT4H1P63272 117 aaKnown RBP6.46□□□□□ -1.38
SF3A1-208ENST00000485618 PRCDQ00LT1 54 aa6.46□□□□□ -1.38
SF3A1-208ENST00000485618 DHRS2Q13268 280 aa6.46□□□□□ -1.38
SF3A1-208ENST00000485618 DCTN2Q13561 401 aaKnown RBP6.46□□□□□ -1.38
SF3A1-208ENST00000485618 MRGPRG-AS1Q2M3A8 158 aa6.46□□□□□ -1.38
SF3A1-208ENST00000485618 C19orf54Q5BKX5 351 aa6.46□□□□□ -1.38
SF3A1-208ENST00000485618 HIST2H2BDQ6DRA6 164 aa6.46□□□□□ -1.38
SF3A1-208ENST00000485618 TET2Q6N021 2002 aaPredicted RBP6.46□□□□□ -1.38
SF3A1-208ENST00000485618 NBEAL2Q6ZNJ1 2754 aa6.46□□□□□ -1.38
SF3A1-208ENST00000485618 OR1S1Q8NH92 325 aa6.46□□□□□ -1.38
SF3A1-208ENST00000485618 ZNF431Q8TF32 576 aaPredicted RBP6.46□□□□□ -1.38
SF3A1-208ENST00000485618 MITD1Q8WV92 249 aa6.46□□□□□ -1.38
SF3A1-208ENST00000485618 C4orf3Q8WVX3 66 aa6.46□□□□□ -1.38
SF3A1-208ENST00000485618 MS4A10Q96PG2 267 aa6.46□□□□□ -1.38
SF3A1-208ENST00000485618 CIB3Q96Q77 187 aaPredicted RBP6.46□□□□□ -1.38
SF3A1-208ENST00000485618 GPR61Q9BZJ8 451 aa6.46□□□□□ -1.38
SF3A1-208ENST00000485618 CACNG5Q9UF02 275 aa6.46□□□□□ -1.38
SF3A1-208ENST00000485618 TBC1D24Q9ULP9 559 aa6.46□□□□□ -1.38
SF3A1-208ENST00000485618 FLVCR2Q9UPI3 526 aa6.46□□□□□ -1.38
SF3A1-208ENST00000485618 NSG2Q9Y328 171 aa6.46□□□□□ -1.38
SF3A1-208ENST00000485618 TRBV7-1A0A0A6YYK4 115 aa6.45□□□□□ -1.38
SF3A1-208ENST00000485618 HMX3A6NHT5 357 aa6.45□□□□□ -1.38
SF3A1-208ENST00000485618 TEX22C9J3V5 150 aa6.45□□□□□ -1.38
SF3A1-208ENST00000485618 FAM90A26D6RGX4 464 aa6.45□□□□□ -1.38
SF3A1-208ENST00000485618 INMT-MINDY4F8WBC2 141 aa6.45□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms