RNA–Protein interactions for RNA: ENST00000433394.1

USP54-206, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 5

Gene USP54, Length 600 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-206ENST00000433394 FAM19A3Q7Z5A8 133 aa3.18□□□□□ -1.9
USP54-206ENST00000433394 S100A7AQ86SG5 101 aa3.18□□□□□ -1.9
USP54-206ENST00000433394 KRTCAP2Q8N6L1 136 aa3.18□□□□□ -1.9
USP54-206ENST00000433394 OR9I1Q8NGQ6 314 aa3.18□□□□□ -1.9
USP54-206ENST00000433394 OR4A5Q8NH83 315 aa3.18□□□□□ -1.9
USP54-206ENST00000433394 CYGBQ8WWM9 190 aa3.18□□□□□ -1.9
USP54-206ENST00000433394 MAL2Q969L2 176 aa3.18□□□□□ -1.9
USP54-206ENST00000433394 TAMM41Q96BW9 452 aa3.18□□□□□ -1.9
USP54-206ENST00000433394 C12orf43Q96C57 262 aaKnown RBP3.18□□□□□ -1.9
USP54-206ENST00000433394 PRAP1Q96NZ9 151 aa3.18□□□□□ -1.9
USP54-206ENST00000433394 GPR22Q99680 433 aa3.18□□□□□ -1.9
USP54-206ENST00000433394 HIGD2AQ9BW72 106 aa3.18□□□□□ -1.9
USP54-206ENST00000433394 KRTAP4-3Q9BYR4 195 aa3.18□□□□□ -1.9
USP54-206ENST00000433394 OR2D2Q9H210 308 aa3.18□□□□□ -1.9
USP54-206ENST00000433394 DNAJC12Q9UKB3 198 aa3.18□□□□□ -1.9
USP54-206ENST00000433394 FIS1Q9Y3D6 152 aa3.18□□□□□ -1.9
USP54-206ENST00000433394 R4GN34 69 aa3.18□□□□□ -1.9
USP54-206ENST00000433394 MICAL3Q7RTP6 2002 aa3.18□□□□□ -1.9
USP54-206ENST00000433394 COL4A6Q14031 1691 aa3.17□□□□□ -1.9
USP54-206ENST00000433394 IGHV3OR15-7A0A075B7D8 119 aa3.17□□□□□ -1.9
USP54-206ENST00000433394 ARL5CA6NH57 179 aa3.17□□□□□ -1.9
USP54-206ENST00000433394 METTL15A6NJ78 407 aa3.17□□□□□ -1.9
USP54-206ENST00000433394 RFPL4AA6NLU0 287 aa3.17□□□□□ -1.9
USP54-206ENST00000433394 RFPL4AL1F8VTS6 287 aa3.17□□□□□ -1.9
USP54-206ENST00000433394 PIRO00625 290 aa3.17□□□□□ -1.9
USP54-206ENST00000433394 PFDN6O15212 129 aa3.17□□□□□ -1.9
USP54-206ENST00000433394 HPGDSO60760 199 aa3.17□□□□□ -1.9
USP54-206ENST00000433394 SH2D1AO60880 128 aa3.17□□□□□ -1.9
USP54-206ENST00000433394 SCGB1A1P11684 91 aa3.17□□□□□ -1.9
USP54-206ENST00000433394 GABRA3P34903 492 aa3.17□□□□□ -1.9
USP54-206ENST00000433394 PSPHP78330 225 aa3.17□□□□□ -1.9
USP54-206ENST00000433394 DEFA6Q01524 100 aa3.17□□□□□ -1.9
USP54-206ENST00000433394 TMEM176BQ3YBM2 270 aaPredicted RBP3.17□□□□□ -1.9
USP54-206ENST00000433394 CYHR1Q6ZMK1 362 aa3.17□□□□□ -1.9
USP54-206ENST00000433394 PHF13Q86YI8 300 aaPredicted RBP3.17□□□□□ -1.9
USP54-206ENST00000433394 SLC25A44Q96H78 314 aaPredicted RBP3.17□□□□□ -1.9
USP54-206ENST00000433394 SFRP2Q96HF1 295 aa3.17□□□□□ -1.9
USP54-206ENST00000433394 HOPXQ9BPY8 73 aaPredicted RBP3.17□□□□□ -1.9
USP54-206ENST00000433394 EIF5A2Q9GZV4 153 aaKnown RBP3.17□□□□□ -1.9
USP54-206ENST00000433394 METTL17Q9H7H0 456 aaPredicted RBP3.17□□□□□ -1.9
USP54-206ENST00000433394 TMEM138Q9NPI0 162 aa3.17□□□□□ -1.9
USP54-206ENST00000433394 UBQLN4Q9NRR5 601 aa3.17□□□□□ -1.9
USP54-206ENST00000433394 CTNNBIP1Q9NSA3 81 aaPredicted RBP3.17□□□□□ -1.9
USP54-206ENST00000433394 CISHQ9NSE2 258 aa3.17□□□□□ -1.9
USP54-206ENST00000433394 SNX10Q9Y5X0 201 aa3.17□□□□□ -1.9
USP54-206ENST00000433394 LTBP2Q14767 1821 aa3.16□□□□□ -1.9
USP54-206ENST00000433394 PDE4DIPQ5VU43 2346 aa3.16□□□□□ -1.9
USP54-206ENST00000433394 TET1Q8NFU7 2136 aa3.16□□□□□ -1.9
USP54-206ENST00000433394 BRCA2P51587 3418 aa3.16□□□□□ -1.9
USP54-206ENST00000433394 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP3.16□□□□□ -1.9
USP54-206ENST00000433394 GGTLC3B5MD39 225 aa3.16□□□□□ -1.9
USP54-206ENST00000433394 DISC1C4P0D8 188 aa3.16□□□□□ -1.9
USP54-206ENST00000433394 ARL6IP5O75915 188 aa3.16□□□□□ -1.9
USP54-206ENST00000433394 ISG15P05161 165 aa3.16□□□□□ -1.9
USP54-206ENST00000433394 HIST1H1CP16403 213 aaKnown RBP3.16□□□□□ -1.9
USP54-206ENST00000433394 CD52P31358 61 aa3.16□□□□□ -1.9
USP54-206ENST00000433394 PHBP35232 272 aa3.16□□□□□ -1.9
USP54-206ENST00000433394 GNG11P61952 73 aa3.16□□□□□ -1.9
USP54-206ENST00000433394 BTN3A2P78410 334 aa3.16□□□□□ -1.9
USP54-206ENST00000433394 LYG2Q86SG7 212 aa3.16□□□□□ -1.9
USP54-206ENST00000433394 ZNF664Q8N3J9 261 aa3.16□□□□□ -1.9
USP54-206ENST00000433394 TESCQ96BS2 214 aa3.16□□□□□ -1.9
USP54-206ENST00000433394 ZHX1-C8orf76Q96EF9 292 aa3.16□□□□□ -1.9
USP54-206ENST00000433394 IGF2BP2-AS1Q96M15 143 aa3.16□□□□□ -1.9
USP54-206ENST00000433394 TCEAL7Q9BRU2 100 aa3.16□□□□□ -1.9
USP54-206ENST00000433394 RTBDNQ9BSG5 229 aaPredicted RBP3.16□□□□□ -1.9
USP54-206ENST00000433394 RPUSD1Q9UJJ7 312 aaKnown RBP3.16□□□□□ -1.9
USP54-206ENST00000433394 NDUFAF1Q9Y375 327 aa3.16□□□□□ -1.9
USP54-206ENST00000433394 WASHC3Q9Y3C0 194 aa3.16□□□□□ -1.9
USP54-206ENST00000433394 PHLDA3Q9Y5J5 127 aa3.16□□□□□ -1.9
USP54-206ENST00000433394 SEC16AO15027 2179 aa3.16□□□□□ -1.9
USP54-206ENST00000433394 PTPRJQ12913 1337 aa3.16□□□□□ -1.9
USP54-206ENST00000433394 A0A087X0T9 212 aa3.15□□□□□ -1.91
USP54-206ENST00000433394 LTAP01374 205 aa3.15□□□□□ -1.91
USP54-206ENST00000433394 HBZP02008 142 aa3.15□□□□□ -1.91
USP54-206ENST00000433394 PPBPP02775 128 aa3.15□□□□□ -1.91
USP54-206ENST00000433394 CRHP06850 196 aa3.15□□□□□ -1.91
USP54-206ENST00000433394 HRES1P13985 223 aa3.15□□□□□ -1.91
USP54-206ENST00000433394 OGNP20774 298 aaKnown RBP3.15□□□□□ -1.91
USP54-206ENST00000433394 GNG2P59768 71 aa3.15□□□□□ -1.91
USP54-206ENST00000433394 MLLT11Q13015 90 aaPredicted RBP3.15□□□□□ -1.91
USP54-206ENST00000433394 DRAM2Q6UX65 266 aa3.15□□□□□ -1.91
USP54-206ENST00000433394 VN1R4Q7Z5H5 301 aa3.15□□□□□ -1.91
USP54-206ENST00000433394 C2orf73Q8N5S3 287 aaPredicted RBP3.15□□□□□ -1.91
USP54-206ENST00000433394 OR51H1Q8NH63 302 aa3.15□□□□□ -1.91
USP54-206ENST00000433394 TLCD1Q96CP7 247 aa3.15□□□□□ -1.91
USP54-206ENST00000433394 C12orf57Q99622 126 aa3.15□□□□□ -1.91
USP54-206ENST00000433394 MED18Q9BUE0 208 aa3.15□□□□□ -1.91
USP54-206ENST00000433394 TMEM109Q9BVC6 243 aa3.15□□□□□ -1.91
USP54-206ENST00000433394 SPANXA1Q9NS26 97 aa3.15□□□□□ -1.91
USP54-206ENST00000433394 FAM206AQ9NX38 181 aa3.15□□□□□ -1.91
USP54-206ENST00000433394 SMPXQ9UHP9 88 aa3.15□□□□□ -1.91
USP54-206ENST00000433394 PYCARDQ9ULZ3 195 aa3.15□□□□□ -1.91
USP54-206ENST00000433394 OR51B4Q9Y5P0 310 aa3.15□□□□□ -1.91
USP54-206ENST00000433394 NUBP2Q9Y5Y2 271 aa3.15□□□□□ -1.91
USP54-206ENST00000433394 U3KQK5 164 aa3.15□□□□□ -1.91
USP54-206ENST00000433394 PTPRDP23468 1912 aa3.15□□□□□ -1.91
USP54-206ENST00000433394 NLRC5Q86WI3 1866 aa3.14□□□□□ -1.91
USP54-206ENST00000433394 SIGLEC16A6NMB1 481 aa3.14□□□□□ -1.91
USP54-206ENST00000433394 LINC00587B1AMM8 73 aa3.14□□□□□ -1.91
Retrieved 100 of 20,778 RNA–protein pairs in 45.4 ms