RNA–Protein interactions for RNA: ENST00000400301.5

USP48-204, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 1 (best) BASIC

Gene USP48, Length 4,309 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-204ENST00000400301 OR8B3Q8NGG8 313 aa15.42■□□□□ 0.06
USP48-204ENST00000400301 OR2T6Q8NHC8 308 aa15.42■□□□□ 0.06
USP48-204ENST00000400301 OR8B2Q96RD0 313 aa15.42■□□□□ 0.06
USP48-204ENST00000400301 FGF23Q9GZV9 251 aaPredicted RBP15.42■□□□□ 0.06
USP48-204ENST00000400301 SERTM2A0A1B0GWG4 89 aa15.42■□□□□ 0.06
USP48-204ENST00000400301 SELENOTP62341 195 aa15.42■□□□□ 0.06
USP48-204ENST00000400301 GAMTQ14353 236 aa15.42■□□□□ 0.06
USP48-204ENST00000400301 FAM162BQ5T6X4 162 aa15.42■□□□□ 0.06
USP48-204ENST00000400301 NPIPB3Q92617 1050 aa15.42■□□□□ 0.06
USP48-204ENST00000400301 ZNF430Q9H8G1 570 aaPredicted RBP15.42■□□□□ 0.06
USP48-204ENST00000400301 RBFOX2O43251 390 aaKnown RBP eCLIP15.42■□□□□ 0.06
USP48-204ENST00000400301 IGHG3P01860 377 aa15.42■□□□□ 0.06
USP48-204ENST00000400301 REG1AP05451 166 aa15.42■□□□□ 0.06
USP48-204ENST00000400301 CEACAM3P40198 252 aa15.42■□□□□ 0.06
USP48-204ENST00000400301 MFAP2P55001 183 aa15.42■□□□□ 0.06
USP48-204ENST00000400301 Q8NFD4 153 aa15.42■□□□□ 0.06
USP48-204ENST00000400301 GATA2P23769 480 aaPredicted RBP15.41■□□□□ 0.06
USP48-204ENST00000400301 MMDQ15546 238 aa15.41■□□□□ 0.06
USP48-204ENST00000400301 IBA57Q5T440 356 aaKnown RBP15.41■□□□□ 0.06
USP48-204ENST00000400301 IGKV1-39P01597 117 aa15.41■□□□□ 0.06
USP48-204ENST00000400301 IGKV1D-39P04432 117 aa15.41■□□□□ 0.06
USP48-204ENST00000400301 FAM53AQ6NSI3 398 aaPredicted RBP15.41■□□□□ 0.06
USP48-204ENST00000400301 USF3Q68DE3 2245 aa15.41■□□□□ 0.06
USP48-204ENST00000400301 MBNL2Q5VZF2 373 aaKnown RBP15.41■□□□□ 0.06
USP48-204ENST00000400301 SSX8Q7RTT4 187 aa15.41■□□□□ 0.06
USP48-204ENST00000400301 GRIFINA4D1Z8 144 aa15.4■□□□□ 0.06
USP48-204ENST00000400301 IGKV3-15P01624 115 aa15.4■□□□□ 0.06
USP48-204ENST00000400301 NHLRC2Q8NBF2 726 aa15.4■□□□□ 0.06
USP48-204ENST00000400301 ELOVL1Q9BW60 279 aa15.4■□□□□ 0.06
USP48-204ENST00000400301 HYPMO75409 117 aa15.4■□□□□ 0.06
USP48-204ENST00000400301 CCL3L1P16619 93 aa15.4■□□□□ 0.06
USP48-204ENST00000400301 TBX15Q96SF7 602 aa15.4■□□□□ 0.06
USP48-204ENST00000400301 RASL11BQ9BPW5 248 aa15.4■□□□□ 0.06
USP48-204ENST00000400301 MRPL18Q9H0U6 180 aaKnown RBP15.4■□□□□ 0.06
USP48-204ENST00000400301 AAMDCQ9H7C9 122 aa15.4■□□□□ 0.06
USP48-204ENST00000400301 TNFRSF19Q9NS68 423 aa15.4■□□□□ 0.06
USP48-204ENST00000400301 C15orf61A6NNL5 157 aa15.4■□□□□ 0.06
USP48-204ENST00000400301 NUBP1P53384 320 aa15.4■□□□□ 0.06
USP48-204ENST00000400301 MMD2Q8IY49 270 aa15.4■□□□□ 0.06
USP48-204ENST00000400301 KLHDC1Q8N7A1 406 aa15.4■□□□□ 0.06
USP48-204ENST00000400301 OR9G1Q8NH87 305 aa15.4■□□□□ 0.06
USP48-204ENST00000400301 SLC25A15Q9Y619 301 aa15.4■□□□□ 0.06
USP48-204ENST00000400301 MED13LQ71F56 2210 aa15.4■□□□□ 0.06
USP48-204ENST00000400301 PLCE1Q9P212 2302 aa15.4■□□□□ 0.06
USP48-204ENST00000400301 PGPEP1LA6NFU8 196 aa15.39■□□□□ 0.05
USP48-204ENST00000400301 TM4SF5O14894 197 aa15.39■□□□□ 0.05
USP48-204ENST00000400301 CBLN1P23435 193 aa15.39■□□□□ 0.05
USP48-204ENST00000400301 FAM57AQ8TBR7 257 aa15.39■□□□□ 0.05
USP48-204ENST00000400301 SLC17A3O00476 420 aa15.39■□□□□ 0.05
USP48-204ENST00000400301 GCGP01275 180 aa15.39■□□□□ 0.05
USP48-204ENST00000400301 CENPWQ5EE01 88 aa15.39■□□□□ 0.05
USP48-204ENST00000400301 DOLPP1Q86YN1 238 aa15.39■□□□□ 0.05
USP48-204ENST00000400301 OSR1Q8TAX0 266 aaPredicted RBP15.39■□□□□ 0.05
USP48-204ENST00000400301 TMEM186Q96B77 213 aa15.39■□□□□ 0.05
USP48-204ENST00000400301 PRR14LQ5THK1 2151 aa15.39■□□□□ 0.05
USP48-204ENST00000400301 C1QTNF9P0C862 333 aa15.39■□□□□ 0.05
USP48-204ENST00000400301 LCN2P80188 198 aa15.39■□□□□ 0.05
USP48-204ENST00000400301 VN1R17PQ8TDU5 208 aa15.39■□□□□ 0.05
USP48-204ENST00000400301 HSPB9Q9BQS6 159 aa15.39■□□□□ 0.05
USP48-204ENST00000400301 MRPL20Q9BYC9 149 aaKnown RBP15.39■□□□□ 0.05
USP48-204ENST00000400301 BDP1A6H8Y1 2624 aa15.39■□□□□ 0.05
USP48-204ENST00000400301 P01737 135 aa15.39■□□□□ 0.05
USP48-204ENST00000400301 DDTP30046 118 aa15.39■□□□□ 0.05
USP48-204ENST00000400301 OR5I1Q13606 314 aa15.39■□□□□ 0.05
USP48-204ENST00000400301 PAM16Q9Y3D7 125 aa15.39■□□□□ 0.05
USP48-204ENST00000400301 BSPH1Q075Z2 132 aa15.38■□□□□ 0.05
USP48-204ENST00000400301 MIR17HGQ75NE6 70 aa15.38■□□□□ 0.05
USP48-204ENST00000400301 IFI27L2Q9H2X8 130 aa15.38■□□□□ 0.05
USP48-204ENST00000400301 HIF1ANQ9NWT6 349 aa15.38■□□□□ 0.05
USP48-204ENST00000400301 ARL2-SNX15V9GYD0 113 aa15.38■□□□□ 0.05
USP48-204ENST00000400301 CCL21O00585 134 aa15.38■□□□□ 0.05
USP48-204ENST00000400301 HIST1H1EP10412 219 aaKnown RBP15.38■□□□□ 0.05
USP48-204ENST00000400301 ERVK11-1P61568 191 aa15.38■□□□□ 0.05
USP48-204ENST00000400301 KIAA1644Q3SXP7 199 aa15.38■□□□□ 0.05
USP48-204ENST00000400301 FAM90A2PQ658T7 463 aa15.38■□□□□ 0.05
USP48-204ENST00000400301 C1QL4Q86Z23 238 aa15.38■□□□□ 0.05
USP48-204ENST00000400301 OR2D3Q8NGH3 330 aa15.38■□□□□ 0.05
USP48-204ENST00000400301 ABHD17AQ96GS6 310 aa15.38■□□□□ 0.05
USP48-204ENST00000400301 TMEM106BQ9NUM4 274 aa15.38■□□□□ 0.05
USP48-204ENST00000400301 PLA2G2EQ9NZK7 142 aa15.38■□□□□ 0.05
USP48-204ENST00000400301 BRCA2P51587 3418 aa15.38■□□□□ 0.05
USP48-204ENST00000400301 COL8A1P27658 744 aa15.38■□□□□ 0.05
USP48-204ENST00000400301 GFI1BQ5VTD9 330 aa15.38■□□□□ 0.05
USP48-204ENST00000400301 TREML4Q6UXN2 200 aa15.38■□□□□ 0.05
USP48-204ENST00000400301 C17orf100A8MU93 164 aa15.37■□□□□ 0.05
USP48-204ENST00000400301 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP15.37■□□□□ 0.05
USP48-204ENST00000400301 APCSP02743 223 aa15.37■□□□□ 0.05
USP48-204ENST00000400301 ATP5IP56385 69 aaPredicted RBP15.37■□□□□ 0.05
USP48-204ENST00000400301 KRTAP27-1Q3LI81 207 aa15.37■□□□□ 0.05
USP48-204ENST00000400301 TRBV24-1A0A075B6N3 115 aa15.37■□□□□ 0.05
USP48-204ENST00000400301 TRAV3A0A0B4J244 114 aa15.37■□□□□ 0.05
USP48-204ENST00000400301 PGPA6NDG6 321 aa15.37■□□□□ 0.05
USP48-204ENST00000400301 GNG7O60262 68 aa15.37■□□□□ 0.05
USP48-204ENST00000400301 G0S2P27469 103 aa15.37■□□□□ 0.05
USP48-204ENST00000400301 SMIM15Q7Z3B0 74 aa15.37■□□□□ 0.05
USP48-204ENST00000400301 CHD7Q9P2D1 2997 aa15.37■□□□□ 0.05
USP48-204ENST00000400301 IGKV1D-17A0A075B6S4 117 aa15.37■□□□□ 0.05
USP48-204ENST00000400301 NDUFA2O43678 99 aa15.37■□□□□ 0.05
USP48-204ENST00000400301 C19orf24Q9BVV8 132 aa15.37■□□□□ 0.05
USP48-204ENST00000400301 TMEM242Q9NWH2 141 aa15.37■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 46.9 ms