RNA–Protein interactions for RNA: ENST00000377047.8

GPC6-201, Transcript of glypican 6, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene GPC6, Length 6,467 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPC6-201ENST00000377047 LINC01587Q99440 93 aa11.44□□□□□ -0.58
GPC6-201ENST00000377047 ATG101Q9BSB4 218 aa11.44□□□□□ -0.58
GPC6-201ENST00000377047 MRPL18Q9H0U6 180 aaKnown RBP11.44□□□□□ -0.58
GPC6-201ENST00000377047 SAA2-SAA4A0A096LPE2 208 aa11.44□□□□□ -0.58
GPC6-201ENST00000377047 TRAV40A0A0B4J280 105 aa11.44□□□□□ -0.58
GPC6-201ENST00000377047 SAA2P0DJI9 122 aaPredicted RBP11.44□□□□□ -0.58
GPC6-201ENST00000377047 H2BFSP57053 126 aa11.44□□□□□ -0.58
GPC6-201ENST00000377047 PPP1R17O96001 155 aa11.44□□□□□ -0.58
GPC6-201ENST00000377047 SAPCD1Q5SSQ6 148 aa11.44□□□□□ -0.58
GPC6-201ENST00000377047 ZNF660Q6AZW8 331 aaPredicted RBP11.44□□□□□ -0.58
GPC6-201ENST00000377047 PSMB11A5LHX3 300 aa11.43□□□□□ -0.58
GPC6-201ENST00000377047 TMEM133Q9H2Q1 129 aa11.43□□□□□ -0.58
GPC6-201ENST00000377047 ZMAT5Q9UDW3 170 aaKnown RBP11.43□□□□□ -0.58
GPC6-201ENST00000377047 THADAQ6YHU6 1953 aa11.43□□□□□ -0.58
GPC6-201ENST00000377047 IGLV3-32A0A0A0MS00 114 aa11.43□□□□□ -0.58
GPC6-201ENST00000377047 TCRBV4S1A1TA0A5B7 111 aa11.43□□□□□ -0.58
GPC6-201ENST00000377047 RPL24P83731 157 aaKnown RBP11.43□□□□□ -0.58
GPC6-201ENST00000377047 ARL6IP6Q8N6S5 226 aa11.43□□□□□ -0.58
GPC6-201ENST00000377047 KIR2DL4Q99706 377 aa11.43□□□□□ -0.58
GPC6-201ENST00000377047 HLA-DQA1P01909 254 aa11.43□□□□□ -0.58
GPC6-201ENST00000377047 WFIKKN1Q96NZ8 548 aa11.43□□□□□ -0.58
GPC6-201ENST00000377047 GEMIN7Q9H840 131 aaKnown RBP11.43□□□□□ -0.58
GPC6-201ENST00000377047 HLA-DRB1P01911 266 aa11.43□□□□□ -0.58
GPC6-201ENST00000377047 LGALS3P17931 250 aaKnown RBP11.43□□□□□ -0.58
GPC6-201ENST00000377047 RNASE4P34096 147 aaKnown RBP11.43□□□□□ -0.58
GPC6-201ENST00000377047 ICE1Q9Y2F5 2266 aa11.43□□□□□ -0.58
GPC6-201ENST00000377047 M0R381 172 aa11.43□□□□□ -0.58
GPC6-201ENST00000377047 MEIG1Q5JSS6 88 aa11.43□□□□□ -0.58
GPC6-201ENST00000377047 TCF24Q7RTU0 167 aa11.42□□□□□ -0.58
GPC6-201ENST00000377047 NPCDR1Q9BY65 106 aa11.42□□□□□ -0.58
GPC6-201ENST00000377047 SAA1P0DJI8 122 aaPredicted RBP11.42□□□□□ -0.58
GPC6-201ENST00000377047 ASIPP42127 132 aa11.42□□□□□ -0.58
GPC6-201ENST00000377047 RND3P61587 244 aa11.42□□□□□ -0.58
GPC6-201ENST00000377047 TFF3Q07654 80 aa11.42□□□□□ -0.58
GPC6-201ENST00000377047 HSPB9Q9BQS6 159 aa11.42□□□□□ -0.58
GPC6-201ENST00000377047 TRBV20OR9-2A0A075B6H5 130 aa11.42□□□□□ -0.58
GPC6-201ENST00000377047 NBEAP1P0C6P0 100 aa11.42□□□□□ -0.58
GPC6-201ENST00000377047 TIMP3P35625 211 aa11.42□□□□□ -0.58
GPC6-201ENST00000377047 MARVELD3Q96A59 401 aa11.42□□□□□ -0.58
GPC6-201ENST00000377047 MRPL13Q9BYD1 178 aaKnown RBP11.42□□□□□ -0.58
GPC6-201ENST00000377047 A0A1B0GTI1 187 aa11.42□□□□□ -0.58
GPC6-201ENST00000377047 AHCTF1Q8WYP5 2266 aa11.42□□□□□ -0.58
GPC6-201ENST00000377047 M0QZK8 103 aa11.42□□□□□ -0.58
GPC6-201ENST00000377047 SIGLEC5O15389 551 aa11.42□□□□□ -0.58
GPC6-201ENST00000377047 IGHV1-46P01743 117 aa11.42□□□□□ -0.58
GPC6-201ENST00000377047 SRSF6Q13247 344 aaKnown RBP11.42□□□□□ -0.58
GPC6-201ENST00000377047 CENPWQ5EE01 88 aa11.42□□□□□ -0.58
GPC6-201ENST00000377047 TNFRSF18Q9Y5U5 241 aa11.42□□□□□ -0.58
GPC6-201ENST00000377047 TMEM101Q96IK0 257 aa11.41□□□□□ -0.58
GPC6-201ENST00000377047 LYZL4Q96KX0 146 aa11.41□□□□□ -0.58
GPC6-201ENST00000377047 DSCR9P59020 149 aa11.41□□□□□ -0.58
GPC6-201ENST00000377047 STHQ8IWL8 128 aa11.41□□□□□ -0.58
GPC6-201ENST00000377047 IFT22Q9H7X7 185 aa11.41□□□□□ -0.58
GPC6-201ENST00000377047 GREB1Q4ZG55 1949 aa11.41□□□□□ -0.58
GPC6-201ENST00000377047 ZNF383Q8NA42 475 aa11.41□□□□□ -0.58
GPC6-201ENST00000377047 A0A087X0M5 115 aa11.41□□□□□ -0.58
GPC6-201ENST00000377047 A0A1B0GX30 115 aa11.41□□□□□ -0.58
GPC6-201ENST00000377047 C8orf46Q8TAG6 207 aa11.41□□□□□ -0.58
GPC6-201ENST00000377047 PARLQ9H300 379 aa11.41□□□□□ -0.58
GPC6-201ENST00000377047 TRAV24A0A0B4J272 114 aa11.41□□□□□ -0.58
GPC6-201ENST00000377047 EGR1P18146 543 aa11.41□□□□□ -0.58
GPC6-201ENST00000377047 AGAP20933 346 aa11.41□□□□□ -0.58
GPC6-201ENST00000377047 FHITP49789 147 aa11.41□□□□□ -0.58
GPC6-201ENST00000377047 LDLRAD2Q5SZI1 272 aa11.41□□□□□ -0.58
GPC6-201ENST00000377047 LAIR2Q6ISS4 152 aa11.41□□□□□ -0.58
GPC6-201ENST00000377047 FGFBP3Q8TAT2 258 aa11.41□□□□□ -0.58
GPC6-201ENST00000377047 CGAP01215 116 aa11.4□□□□□ -0.58
GPC6-201ENST00000377047 TRGC2P03986 189 aa11.4□□□□□ -0.58
GPC6-201ENST00000377047 SPTA1P02549 2419 aa11.4□□□□□ -0.58
GPC6-201ENST00000377047 NPIPB7O75200 414 aa11.4□□□□□ -0.58
GPC6-201ENST00000377047 LEPROTL1O95214 131 aa11.4□□□□□ -0.58
GPC6-201ENST00000377047 PRSS2P07478 247 aa11.4□□□□□ -0.58
GPC6-201ENST00000377047 SUMO2P61956 95 aaKnown RBP11.4□□□□□ -0.58
GPC6-201ENST00000377047 ZNF672Q499Z4 452 aaPredicted RBP11.4□□□□□ -0.58
GPC6-201ENST00000377047 TRGV2A0A075B6R0 118 aa11.4□□□□□ -0.58
GPC6-201ENST00000377047 NYNRINQ9P2P1 1898 aaKnown RBP11.4□□□□□ -0.58
GPC6-201ENST00000377047 TGIF2-C20orf24A0A0A6YYL0 155 aa11.4□□□□□ -0.58
GPC6-201ENST00000377047 RBFOX2O43251 390 aaKnown RBP eCLIP11.4□□□□□ -0.585e-6■■■■□ 21.7
GPC6-201ENST00000377047 ZNF25P17030 456 aaPredicted RBP11.4□□□□□ -0.58
GPC6-201ENST00000377047 TAS2R60P59551 318 aa11.4□□□□□ -0.58
GPC6-201ENST00000377047 CIRBPQ14011 172 aaKnown RBP11.4□□□□□ -0.58
GPC6-201ENST00000377047 HIST1H2BAQ96A08 127 aa11.4□□□□□ -0.58
GPC6-201ENST00000377047 SFRP2Q96HF1 295 aa11.4□□□□□ -0.58
GPC6-201ENST00000377047 ZDBF2Q9HCK1 2354 aa11.4□□□□□ -0.59
GPC6-201ENST00000377047 DANCRP0C864 163 aa11.4□□□□□ -0.59
GPC6-201ENST00000377047 Q0VFX4 171 aa11.4□□□□□ -0.59
GPC6-201ENST00000377047 C2orf68Q2NKX9 166 aa11.4□□□□□ -0.59
GPC6-201ENST00000377047 KIAA1644Q3SXP7 199 aa11.4□□□□□ -0.59
GPC6-201ENST00000377047 DNLZQ5SXM8 178 aa11.4□□□□□ -0.59
GPC6-201ENST00000377047 RNASEH2CQ8TDP1 164 aaKnown RBP11.4□□□□□ -0.59
GPC6-201ENST00000377047 MDC1Q14676 2089 aaKnown RBP11.4□□□□□ -0.59
GPC6-201ENST00000377047 SRIP30626 198 aa11.39□□□□□ -0.59
GPC6-201ENST00000377047 GLMPQ8WWB7 406 aa11.39□□□□□ -0.59
GPC6-201ENST00000377047 TMEM238LA0A1B0GVL6 79 aa11.39□□□□□ -0.59
GPC6-201ENST00000377047 A6NJY4 79 aa11.39□□□□□ -0.59
GPC6-201ENST00000377047 YPEL1O60688 119 aa11.39□□□□□ -0.59
GPC6-201ENST00000377047 MYOD1P15172 320 aa11.39□□□□□ -0.59
GPC6-201ENST00000377047 YPEL2Q96QA6 119 aa11.39□□□□□ -0.59
GPC6-201ENST00000377047 GGACTQ9BVM4 153 aa11.39□□□□□ -0.59
GPC6-201ENST00000377047 C7orf71A4D174 169 aa11.39□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 75.5 ms