RNA–Protein interactions for RNA: ENST00000291074.9

VPS53-201, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,656 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-201ENST00000291074 PPIAL4AQ9Y536 164 aa16.38■□□□□ 0.21
VPS53-201ENST00000291074 J3QR06 171 aa16.38■□□□□ 0.21
VPS53-201ENST00000291074 IL6RP08887 468 aaPredicted RBP16.38■□□□□ 0.21
VPS53-201ENST00000291074 RTL8BQ17RB0 113 aa16.38■□□□□ 0.21
VPS53-201ENST00000291074 MOB3BQ86TA1 216 aa16.38■□□□□ 0.21
VPS53-201ENST00000291074 RAB1CQ92928 201 aa16.38■□□□□ 0.21
VPS53-201ENST00000291074 DERL1Q9BUN8 251 aa16.38■□□□□ 0.21
VPS53-201ENST00000291074 CTDSP1Q9GZU7 261 aa16.38■□□□□ 0.21
VPS53-201ENST00000291074 GAL3ST2Q9H3Q3 398 aa16.38■□□□□ 0.21
VPS53-201ENST00000291074 RELNP78509 3460 aa16.37■□□□□ 0.21
VPS53-201ENST00000291074 UPK2O00526 184 aa16.37■□□□□ 0.21
VPS53-201ENST00000291074 IGHV2-70P01814 119 aa16.37■□□□□ 0.21
VPS53-201ENST00000291074 GNB1P62873 340 aa16.37■□□□□ 0.21
VPS53-201ENST00000291074 CLEC12BQ2HXU8 276 aa16.37■□□□□ 0.21
VPS53-201ENST00000291074 C4orf17Q53FE4 359 aa16.37■□□□□ 0.21
VPS53-201ENST00000291074 C9orf152Q5JTZ5 239 aa16.37■□□□□ 0.21
VPS53-201ENST00000291074 SPATA31B1PQ5VZV4 182 aa16.37■□□□□ 0.21
VPS53-201ENST00000291074 FRZBQ92765 325 aa16.37■□□□□ 0.21
VPS53-201ENST00000291074 ZNF714Q96N38 554 aa16.37■□□□□ 0.21
VPS53-201ENST00000291074 ELOVL1Q9BW60 279 aa16.37■□□□□ 0.21
VPS53-201ENST00000291074 OR51M1Q9H341 326 aa16.37■□□□□ 0.21
VPS53-201ENST00000291074 AURKAIP1Q9NWT8 199 aaPredicted RBP16.37■□□□□ 0.21
VPS53-201ENST00000291074 IFITM10A6NMD0 228 aa16.37■□□□□ 0.21
VPS53-201ENST00000291074 SAA1P0DJI8 122 aaPredicted RBP16.37■□□□□ 0.21
VPS53-201ENST00000291074 FOSL1P15407 271 aa16.37■□□□□ 0.21
VPS53-201ENST00000291074 ZNF833PQ6ZTB9 187 aa16.36■□□□□ 0.21
VPS53-201ENST00000291074 STPG3Q8N7X2 389 aa16.36■□□□□ 0.21
VPS53-201ENST00000291074 PLEKHA3Q9HB20 300 aa16.36■□□□□ 0.21
VPS53-201ENST00000291074 TMEM106BQ9NUM4 274 aa16.36■□□□□ 0.21
VPS53-201ENST00000291074 CTSZQ9UBR2 303 aa16.36■□□□□ 0.21
VPS53-201ENST00000291074 PRNDQ9UKY0 176 aa16.36■□□□□ 0.21
VPS53-201ENST00000291074 SPTA1P02549 2419 aa16.36■□□□□ 0.21
VPS53-201ENST00000291074 SOX15O60248 233 aa16.36■□□□□ 0.21
VPS53-201ENST00000291074 IGFBP2P18065 325 aa16.36■□□□□ 0.21
VPS53-201ENST00000291074 HOXA5P20719 270 aa16.36■□□□□ 0.21
VPS53-201ENST00000291074 DIAPH2-AS1Q14236 149 aa16.36■□□□□ 0.21
VPS53-201ENST00000291074 TEPPQ6URK8 271 aa16.36■□□□□ 0.21
VPS53-201ENST00000291074 RNASE6Q93091 150 aaKnown RBP16.36■□□□□ 0.21
VPS53-201ENST00000291074 SEPSECSQ9HD40 501 aaKnown RBP16.36■□□□□ 0.21
VPS53-201ENST00000291074 TRBV24-1A0A075B6N3 115 aa16.35■□□□□ 0.21
VPS53-201ENST00000291074 SHISA9B4DS77 424 aa16.35■□□□□ 0.21
VPS53-201ENST00000291074 E7EQL1 145 aa16.35■□□□□ 0.21
VPS53-201ENST00000291074 STAG3L2P0CL84 134 aa16.35■□□□□ 0.21
VPS53-201ENST00000291074 STAG3L3P0CL85 134 aa16.35■□□□□ 0.21
VPS53-201ENST00000291074 MEF2CQ06413 473 aaPredicted RBP16.35■□□□□ 0.21
VPS53-201ENST00000291074 TMEM30BQ3MIR4 351 aa16.35■□□□□ 0.21
VPS53-201ENST00000291074 DMRTC2Q8IXT2 367 aaPredicted RBP16.35■□□□□ 0.21
VPS53-201ENST00000291074 TEX50A0A1B0GTY4 177 aa16.35■□□□□ 0.21
VPS53-201ENST00000291074 K7ENP7 123 aa16.35■□□□□ 0.21
VPS53-201ENST00000291074 TRGC1P0CF51 173 aa16.35■□□□□ 0.21
VPS53-201ENST00000291074 PRCDQ00LT1 54 aa16.35■□□□□ 0.21
VPS53-201ENST00000291074 OR10W1Q8NGF6 305 aa16.35■□□□□ 0.21
VPS53-201ENST00000291074 DYNLRB1Q9NP97 96 aa16.35■□□□□ 0.21
VPS53-201ENST00000291074 IGF2RP11717 2491 aa16.35■□□□□ 0.21
VPS53-201ENST00000291074 H7BYZ3 331 aa16.34■□□□□ 0.21
VPS53-201ENST00000291074 NDUFB4O95168 129 aa16.34■□□□□ 0.21
VPS53-201ENST00000291074 PFN1P07737 140 aaKnown RBP16.34■□□□□ 0.21
VPS53-201ENST00000291074 GFI1BQ5VTD9 330 aa16.34■□□□□ 0.21
VPS53-201ENST00000291074 NAV3Q8IVL0 2385 aa16.34■□□□□ 0.21
VPS53-201ENST00000291074 PGPEP1LA6NFU8 196 aa16.34■□□□□ 0.21
VPS53-201ENST00000291074 GALR1P47211 349 aa16.33■□□□□ 0.21
VPS53-201ENST00000291074 EFNB3Q15768 340 aa16.33■□□□□ 0.21
VPS53-201ENST00000291074 TMEM249Q2WGJ8 235 aa16.33■□□□□ 0.21
VPS53-201ENST00000291074 HARBI1Q96MB7 349 aa16.33■□□□□ 0.21
VPS53-201ENST00000291074 DVL1O14640 695 aa16.33■□□□□ 0.2
VPS53-201ENST00000291074 NDUFB3O43676 98 aa16.33■□□□□ 0.2
VPS53-201ENST00000291074 CHRNB4P30926 498 aa16.33■□□□□ 0.2
VPS53-201ENST00000291074 PDZD11Q5EBL8 140 aa16.33■□□□□ 0.2
VPS53-201ENST00000291074 ZNF257Q9Y2Q1 563 aa16.33■□□□□ 0.2
VPS53-201ENST00000291074 H0YJW9 148 aa16.32■□□□□ 0.2
VPS53-201ENST00000291074 S100PP25815 95 aa16.32■□□□□ 0.2
VPS53-201ENST00000291074 MLANAQ16655 118 aa16.32■□□□□ 0.2
VPS53-201ENST00000291074 TCEAL7Q9BRU2 100 aa16.32■□□□□ 0.2
VPS53-201ENST00000291074 KCNIP2Q9NS61 270 aa16.32■□□□□ 0.2
VPS53-201ENST00000291074 PLXNB1O43157 2135 aa16.32■□□□□ 0.2
VPS53-201ENST00000291074 TPRP12270 2363 aaKnown RBP16.32■□□□□ 0.2
VPS53-201ENST00000291074 PHOX2AO14813 284 aa16.32■□□□□ 0.2
VPS53-201ENST00000291074 TNFRSF13BO14836 293 aaPredicted RBP16.32■□□□□ 0.2
VPS53-201ENST00000291074 PDE6DO43924 150 aa16.32■□□□□ 0.2
VPS53-201ENST00000291074 FOXH1O75593 365 aa16.32■□□□□ 0.2
VPS53-201ENST00000291074 CDX1P47902 265 aaPredicted RBP16.32■□□□□ 0.2
VPS53-201ENST00000291074 ZNF114Q8NC26 417 aa16.32■□□□□ 0.2
VPS53-201ENST00000291074 LRBAP50851 2863 aa16.32■□□□□ 0.2
VPS53-201ENST00000291074 CXorf1O96002 111 aa16.32■□□□□ 0.2
VPS53-201ENST00000291074 APOA2P02652 100 aa16.32■□□□□ 0.2
VPS53-201ENST00000291074 OR10A7Q8NGE5 316 aa16.32■□□□□ 0.2
VPS53-201ENST00000291074 BET1LQ9NYM9 111 aa16.32■□□□□ 0.2
VPS53-201ENST00000291074 YTHDF2Q9Y5A9 579 aaKnown RBP16.32■□□□□ 0.2
VPS53-201ENST00000291074 IGKV1OR2-108A0A075B7D4 117 aa16.31■□□□□ 0.2
VPS53-201ENST00000291074 ACTL6BO94805 426 aa16.31■□□□□ 0.2
VPS53-201ENST00000291074 LOXP28300 417 aaPredicted RBP16.31■□□□□ 0.2
VPS53-201ENST00000291074 CHRNA7P36544 502 aa16.31■□□□□ 0.2
VPS53-201ENST00000291074 LRRC10Q5BKY1 277 aa16.31■□□□□ 0.2
VPS53-201ENST00000291074 LINC01551Q86U37 167 aa16.31■□□□□ 0.2
VPS53-201ENST00000291074 OR10X1Q8NGY0 326 aa16.31■□□□□ 0.2
VPS53-201ENST00000291074 NBASA2RRP1 2371 aa16.31■□□□□ 0.2
VPS53-201ENST00000291074 SCO2A0A1W2PP80 73 aa16.31■□□□□ 0.2
VPS53-201ENST00000291074 PLAUP00749 431 aa16.31■□□□□ 0.2
VPS53-201ENST00000291074 SOD3P08294 240 aa16.31■□□□□ 0.2
VPS53-201ENST00000291074 RNF224P0DH78 156 aa16.31■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 48.3 ms