RNA–Protein interactions for RNA: ENST00000623219.3

LINC00643-205, long intergenic non-protein coding RNA 643, humanhuman

TSL 1 (best)

Gene LINC00643, Length 962 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643-205ENST00000623219 FAM25GB3EWG6 89 aa11.31□□□□□ -0.6
LINC00643-205ENST00000623219 BMPR1BO00238 502 aa11.31□□□□□ -0.6
LINC00643-205ENST00000623219 UPK2O00526 184 aa11.31□□□□□ -0.6
LINC00643-205ENST00000623219 PGLYRP1O75594 196 aaPredicted RBP11.31□□□□□ -0.6
LINC00643-205ENST00000623219 AREGP15514 252 aa11.31□□□□□ -0.6
LINC00643-205ENST00000623219 ZNF182P17025 639 aaPredicted RBP11.31□□□□□ -0.6
LINC00643-205ENST00000623219 CTRB1P17538 263 aa11.31□□□□□ -0.6
LINC00643-205ENST00000623219 F2RP25116 425 aa11.31□□□□□ -0.6
LINC00643-205ENST00000623219 PSMB6P28072 239 aa11.31□□□□□ -0.6
LINC00643-205ENST00000623219 ALDH3B2P48448 385 aa11.31□□□□□ -0.6
LINC00643-205ENST00000623219 OR2B8PP59922 312 aa11.31□□□□□ -0.6
LINC00643-205ENST00000623219 TSPAN5P62079 268 aa11.31□□□□□ -0.6
LINC00643-205ENST00000623219 KLK9Q2XQG4 91 aa11.31□□□□□ -0.6
LINC00643-205ENST00000623219 CTRB2Q6GPI1 263 aa11.31□□□□□ -0.6
LINC00643-205ENST00000623219 THOC7Q6I9Y2 204 aaKnown RBP11.31□□□□□ -0.6
LINC00643-205ENST00000623219 LPCAT3Q6P1A2 487 aa11.31□□□□□ -0.6
LINC00643-205ENST00000623219 GPR141Q7Z602 305 aa11.31□□□□□ -0.6
LINC00643-205ENST00000623219 SRSF8Q9BRL6 282 aaKnown RBP11.31□□□□□ -0.6
LINC00643-205ENST00000623219 COMMD5Q9GZQ3 224 aa11.31□□□□□ -0.6
LINC00643-205ENST00000623219 SIGLEC8Q9NYZ4 499 aa11.31□□□□□ -0.6
LINC00643-205ENST00000623219 PEMTQ9UBM1 199 aa11.31□□□□□ -0.6
LINC00643-205ENST00000623219 FBXL7Q9UJT9 491 aa11.31□□□□□ -0.6
LINC00643-205ENST00000623219 KLK9Q9UKQ9 250 aa11.31□□□□□ -0.6
LINC00643-205ENST00000623219 MYOD1P15172 320 aa11.3□□□□□ -0.6
LINC00643-205ENST00000623219 HIST1H1BP16401 226 aaKnown RBP11.3□□□□□ -0.6
LINC00643-205ENST00000623219 S100GP29377 79 aa11.3□□□□□ -0.6
LINC00643-205ENST00000623219 IL34Q6ZMJ4 242 aa11.3□□□□□ -0.6
LINC00643-205ENST00000623219 C19orf35Q6ZS72 473 aa11.3□□□□□ -0.6
LINC00643-205ENST00000623219 HAPLN4Q86UW8 402 aa11.3□□□□□ -0.6
LINC00643-205ENST00000623219 DGCR14Q96DF8 476 aaKnown RBP11.3□□□□□ -0.6
LINC00643-205ENST00000623219 FANCD2OSQ96PS1 177 aa11.3□□□□□ -0.6
LINC00643-205ENST00000623219 FAM212BQ9NTI7 297 aaPredicted RBP11.3□□□□□ -0.6
LINC00643-205ENST00000623219 EXTL2Q9UBQ6 330 aa11.3□□□□□ -0.6
LINC00643-205ENST00000623219 TRAV3A0A0B4J244 114 aa11.29□□□□□ -0.6
LINC00643-205ENST00000623219 IGLC7A0M8Q6 106 aa11.29□□□□□ -0.6
LINC00643-205ENST00000623219 TPPPO94811 219 aa11.29□□□□□ -0.6
LINC00643-205ENST00000623219 REG1AP05451 166 aa11.29□□□□□ -0.6
LINC00643-205ENST00000623219 DEFA4P12838 97 aa11.29□□□□□ -0.6
LINC00643-205ENST00000623219 SLC38A6Q8IZM9 456 aa11.29□□□□□ -0.6
LINC00643-205ENST00000623219 CADM3Q8N126 398 aa11.29□□□□□ -0.6
LINC00643-205ENST00000623219 FCAMRQ8WWV6 532 aa11.29□□□□□ -0.6
LINC00643-205ENST00000623219 CCDC140Q96MF4 163 aa11.29□□□□□ -0.6
LINC00643-205ENST00000623219 QTRT1Q9BXR0 403 aaKnown RBP11.29□□□□□ -0.6
LINC00643-205ENST00000623219 STAB2Q8WWQ8 2551 aa11.28□□□□□ -0.6
LINC00643-205ENST00000623219 IGLV11-55A0A075B6I3 123 aa11.28□□□□□ -0.6
LINC00643-205ENST00000623219 H0Y980 276 aa11.28□□□□□ -0.6
LINC00643-205ENST00000623219 CSN3P07498 182 aa11.28□□□□□ -0.6
LINC00643-205ENST00000623219 UCP3P55916 312 aa11.28□□□□□ -0.6
LINC00643-205ENST00000623219 PHLDA2Q53GA4 152 aa11.28□□□□□ -0.6
LINC00643-205ENST00000623219 LCN12Q6JVE5 192 aa11.28□□□□□ -0.6
LINC00643-205ENST00000623219 HSD17B13Q7Z5P4 300 aaPredicted RBP11.28□□□□□ -0.6
LINC00643-205ENST00000623219 C15orf40Q8WUR7 153 aa11.28□□□□□ -0.6
LINC00643-205ENST00000623219 EEF1AKMT3Q96AZ1 226 aa11.28□□□□□ -0.6
LINC00643-205ENST00000623219 WWC2-AS2Q96NR7 200 aa11.28□□□□□ -0.6
LINC00643-205ENST00000623219 U3KQK5 164 aa11.28□□□□□ -0.6
LINC00643-205ENST00000623219 TENM3Q9P273 2699 aa11.28□□□□□ -0.6
LINC00643-205ENST00000623219 PPP5D1E7EU14 171 aa11.27□□□□□ -0.61
LINC00643-205ENST00000623219 GGCTO75223 188 aaKnown RBP11.27□□□□□ -0.61
LINC00643-205ENST00000623219 NDUFB8O95169 186 aa11.27□□□□□ -0.61
LINC00643-205ENST00000623219 TBPP20226 339 aa11.27□□□□□ -0.61
LINC00643-205ENST00000623219 LPAR6P43657 344 aa11.27□□□□□ -0.61
LINC00643-205ENST00000623219 ZNF585BQ52M93 769 aa11.27□□□□□ -0.61
LINC00643-205ENST00000623219 RNASE12Q5GAN4 147 aaKnown RBP11.27□□□□□ -0.61
LINC00643-205ENST00000623219 RNASE10Q5GAN6 216 aaKnown RBP11.27□□□□□ -0.61
LINC00643-205ENST00000623219 TBC1D26Q86UD7 250 aa11.27□□□□□ -0.61
LINC00643-205ENST00000623219 Q8N402 240 aa11.27□□□□□ -0.61
LINC00643-205ENST00000623219 OR2K2Q8NGT1 345 aa11.27□□□□□ -0.61
LINC00643-205ENST00000623219 RAB2BQ8WUD1 216 aa11.27□□□□□ -0.61
LINC00643-205ENST00000623219 CXorf58Q96LI9 332 aa11.27□□□□□ -0.61
LINC00643-205ENST00000623219 BCL7BQ9BQE9 202 aa11.27□□□□□ -0.61
LINC00643-205ENST00000623219 KLK11Q9UBX7 282 aa11.27□□□□□ -0.61
LINC00643-205ENST00000623219 DMRT1Q9Y5R6 373 aa11.27□□□□□ -0.61
LINC00643-205ENST00000623219 HUWE1Q7Z6Z7 4374 aaKnown RBP11.27□□□□□ -0.61
LINC00643-205ENST00000623219 TRBV7-1A0A0A6YYK4 115 aa11.26□□□□□ -0.61
LINC00643-205ENST00000623219 M0QYG6 137 aa11.26□□□□□ -0.61
LINC00643-205ENST00000623219 CYB5BO43169 146 aa11.26□□□□□ -0.61
LINC00643-205ENST00000623219 KRASP01116 189 aa11.26□□□□□ -0.61
LINC00643-205ENST00000623219 FRMD6-AS1P0C7T7 363 aa11.26□□□□□ -0.61
LINC00643-205ENST00000623219 RPA2P15927 270 aa11.26□□□□□ -0.61
LINC00643-205ENST00000623219 PTBP1P26599 531 aaKnown RBP eCLIP11.26□□□□□ -0.61
LINC00643-205ENST00000623219 G6PCP35575 357 aa11.26□□□□□ -0.61
LINC00643-205ENST00000623219 ARL3P36405 182 aa11.26□□□□□ -0.61
LINC00643-205ENST00000623219 SPCS2Q15005 226 aa11.26□□□□□ -0.61
LINC00643-205ENST00000623219 LAX1Q8IWV1 398 aa11.26□□□□□ -0.61
LINC00643-205ENST00000623219 ARRDC1Q8N5I2 433 aa11.26□□□□□ -0.61
LINC00643-205ENST00000623219 GDPD1Q8N9F7 314 aa11.26□□□□□ -0.61
LINC00643-205ENST00000623219 OR1L8Q8NGR8 309 aa11.26□□□□□ -0.61
LINC00643-205ENST00000623219 OR52I2Q8NH67 350 aa11.26□□□□□ -0.61
LINC00643-205ENST00000623219 ZNF486Q96H40 463 aaPredicted RBP11.26□□□□□ -0.61
LINC00643-205ENST00000623219 TSC22D3Q99576 134 aa11.26□□□□□ -0.61
LINC00643-205ENST00000623219 ASCL2Q99929 193 aa11.26□□□□□ -0.61
LINC00643-205ENST00000623219 THYN1Q9P016 225 aa11.26□□□□□ -0.61
LINC00643-205ENST00000623219 MTFP1Q9UDX5 166 aa11.26□□□□□ -0.61
LINC00643-205ENST00000623219 MFSD2BA6NFX1 497 aa11.25□□□□□ -0.61
LINC00643-205ENST00000623219 LGALS9O00182 355 aa11.25□□□□□ -0.61
LINC00643-205ENST00000623219 RGS5O15539 181 aa11.25□□□□□ -0.61
LINC00643-205ENST00000623219 SNAPC5O75971 98 aa11.25□□□□□ -0.61
LINC00643-205ENST00000623219 IGHV3-23P01764 117 aa11.25□□□□□ -0.61
LINC00643-205ENST00000623219 IFNA6P05013 189 aa11.25□□□□□ -0.61
LINC00643-205ENST00000623219 TRAPPC2P0DI81 140 aa11.25□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 110.1 ms