RNA–Protein interactions for RNA: ENST00000622776.1

CPSF1-214, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 5

Gene CPSF1, Length 1,029 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-214ENST00000622776 SCGNO76038 276 aa17.73■□□□□ 0.43
CPSF1-214ENST00000622776 TIMM50Q3ZCQ8 353 aa17.73■□□□□ 0.43
CPSF1-214ENST00000622776 ZNF585BQ52M93 769 aa17.73■□□□□ 0.43
CPSF1-214ENST00000622776 RBPMS2Q6ZRY4 209 aaKnown RBP17.73■□□□□ 0.43
CPSF1-214ENST00000622776 OR1L6Q8NGR2 347 aa17.73■□□□□ 0.43
CPSF1-214ENST00000622776 OR4A5Q8NH83 315 aa17.73■□□□□ 0.43
CPSF1-214ENST00000622776 BLOC1S6Q9UL45 172 aa17.73■□□□□ 0.43
CPSF1-214ENST00000622776 TNFSF12O43508 249 aa17.72■□□□□ 0.43
CPSF1-214ENST00000622776 LY6G6CO95867 125 aa17.72■□□□□ 0.43
CPSF1-214ENST00000622776 GPR183P32249 361 aa17.72■□□□□ 0.43
CPSF1-214ENST00000622776 PMS2P11Q13670 270 aa17.72■□□□□ 0.43
CPSF1-214ENST00000622776 AIFM2Q9BRQ8 373 aa17.72■□□□□ 0.43
CPSF1-214ENST00000622776 HRASLSQ9HDD0 168 aa17.72■□□□□ 0.43
CPSF1-214ENST00000622776 CCL28Q9NRJ3 127 aa17.72■□□□□ 0.43
CPSF1-214ENST00000622776 MRPL27Q9P0M9 148 aaKnown RBP17.72■□□□□ 0.43
CPSF1-214ENST00000622776 ELLP55199 621 aaPredicted RBP17.71■□□□□ 0.43
CPSF1-214ENST00000622776 OR2B8PP59922 312 aa17.71■□□□□ 0.43
CPSF1-214ENST00000622776 MSMO1Q15800 293 aa17.71■□□□□ 0.43
CPSF1-214ENST00000622776 SPAG16Q8N0X2 631 aa17.71■□□□□ 0.43
CPSF1-214ENST00000622776 ZNF502Q8TBZ5 544 aa17.71■□□□□ 0.43
CPSF1-214ENST00000622776 SECTM1Q8WVN6 248 aa17.71■□□□□ 0.43
CPSF1-214ENST00000622776 CNBD2Q96M20 576 aa17.71■□□□□ 0.43
CPSF1-214ENST00000622776 DAPK2Q9UIK4 370 aa17.71■□□□□ 0.43
CPSF1-214ENST00000622776 UFC1Q9Y3C8 167 aa17.71■□□□□ 0.43
CPSF1-214ENST00000622776 IGHV3-35A0A0C4DH35 117 aa17.7■□□□□ 0.42
CPSF1-214ENST00000622776 A0A0J9YWU9 116 aa17.7■□□□□ 0.42
CPSF1-214ENST00000622776 IGLC7A0M8Q6 106 aa17.7■□□□□ 0.42
CPSF1-214ENST00000622776 PLET1Q6UQ28 207 aa17.7■□□□□ 0.42
CPSF1-214ENST00000622776 WFDC3Q8IUB2 231 aa17.7■□□□□ 0.42
CPSF1-214ENST00000622776 OR2C3Q8N628 320 aa17.7■□□□□ 0.42
CPSF1-214ENST00000622776 TRAV3A0A0B4J244 114 aa17.69■□□□□ 0.42
CPSF1-214ENST00000622776 RBFOX2O43251 390 aaKnown RBP eCLIP17.69■□□□□ 0.422e-7■■■■□ 25.8
CPSF1-214ENST00000622776 FCGR2CP31995 323 aa17.69■□□□□ 0.42
CPSF1-214ENST00000622776 ARPC4P59998 168 aa17.69■□□□□ 0.42
CPSF1-214ENST00000622776 EWSR1Q01844 656 aaKnown RBP eCLIP17.69■□□□□ 0.42
CPSF1-214ENST00000622776 Q6ZWC4 215 aa17.69■□□□□ 0.42
CPSF1-214ENST00000622776 SLC38A6Q8IZM9 456 aa17.69■□□□□ 0.42
CPSF1-214ENST00000622776 ZBTB34Q8NCN2 500 aa17.69■□□□□ 0.42
CPSF1-214ENST00000622776 BEST4Q8NFU0 473 aa17.69■□□□□ 0.42
CPSF1-214ENST00000622776 OR13F1Q8NGS4 319 aa17.69■□□□□ 0.42
CPSF1-214ENST00000622776 LGALS14Q8TCE9 139 aa17.69■□□□□ 0.42
CPSF1-214ENST00000622776 TXNL4BQ9NX01 149 aaKnown RBP17.69■□□□□ 0.42
CPSF1-214ENST00000622776 TP53TG1Q9Y2A0 90 aa17.69■□□□□ 0.42
CPSF1-214ENST00000622776 NUPR2A6NF83 97 aa17.68■□□□□ 0.42
CPSF1-214ENST00000622776 UPK2O00526 184 aa17.68■□□□□ 0.42
CPSF1-214ENST00000622776 SPRY2O43597 315 aa17.68■□□□□ 0.42
CPSF1-214ENST00000622776 PTHLHP12272 177 aa17.68■□□□□ 0.42
CPSF1-214ENST00000622776 PTBP1P26599 531 aaKnown RBP eCLIP17.68■□□□□ 0.42
CPSF1-214ENST00000622776 FGF9P31371 208 aaPredicted RBP17.68■□□□□ 0.42
CPSF1-214ENST00000622776 APOC4P55056 127 aa17.68■□□□□ 0.42
CPSF1-214ENST00000622776 TNFRSF9Q07011 255 aa17.68■□□□□ 0.42
CPSF1-214ENST00000622776 LYG2Q86SG7 212 aa17.68■□□□□ 0.42
CPSF1-214ENST00000622776 TPRA1Q86W33 373 aa17.68■□□□□ 0.42
CPSF1-214ENST00000622776 SPAG8Q99932 426 aaPredicted RBP17.68■□□□□ 0.42
CPSF1-214ENST00000622776 SRSF8Q9BRL6 282 aaKnown RBP17.68■□□□□ 0.42
CPSF1-214ENST00000622776 ZNF436Q9C0F3 470 aaPredicted RBP17.68■□□□□ 0.42
CPSF1-214ENST00000622776 C5orf66Q9H5L9 145 aa17.68■□□□□ 0.42
CPSF1-214ENST00000622776 RHBDL2Q9NX52 303 aa17.68■□□□□ 0.42
CPSF1-214ENST00000622776 THYN1Q9P016 225 aa17.68■□□□□ 0.42
CPSF1-214ENST00000622776 RRP15Q9Y3B9 282 aaKnown RBP17.68■□□□□ 0.42
CPSF1-214ENST00000622776 SULT1C2O00338 296 aa17.67■□□□□ 0.42
CPSF1-214ENST00000622776 BMI1P35226 326 aa17.67■□□□□ 0.42
CPSF1-214ENST00000622776 TAS2R31P59538 309 aa17.67■□□□□ 0.42
CPSF1-214ENST00000622776 POU2AF1Q16633 256 aa17.67■□□□□ 0.42
CPSF1-214ENST00000622776 ZNF773Q6PK81 442 aa17.67■□□□□ 0.42
CPSF1-214ENST00000622776 GVQW1Q8N7I0 195 aa17.67■□□□□ 0.42
CPSF1-214ENST00000622776 COMMD5Q9GZQ3 224 aa17.67■□□□□ 0.42
CPSF1-214ENST00000622776 SLC5A7Q9GZV3 580 aa17.67■□□□□ 0.42
CPSF1-214ENST00000622776 TGOLN2O43493 480 aa17.66■□□□□ 0.42
CPSF1-214ENST00000622776 HPRT1P00492 218 aa17.66■□□□□ 0.42
CPSF1-214ENST00000622776 PPYP01298 95 aa17.66■□□□□ 0.42
CPSF1-214ENST00000622776 NQO2P16083 231 aa17.66■□□□□ 0.42
CPSF1-214ENST00000622776 HSPA13P48723 471 aa17.66■□□□□ 0.42
CPSF1-214ENST00000622776 CATR1Q13166 79 aa17.66■□□□□ 0.42
CPSF1-214ENST00000622776 DEFB135Q30KP9 77 aa17.66■□□□□ 0.42
CPSF1-214ENST00000622776 SFXN4Q6P4A7 337 aa17.66■□□□□ 0.42
CPSF1-214ENST00000622776 CEMP1Q6PRD7 247 aaPredicted RBP17.66■□□□□ 0.42
CPSF1-214ENST00000622776 IZUMO2Q6UXV1 221 aa17.66■□□□□ 0.42
CPSF1-214ENST00000622776 TMEM190Q8WZ59 177 aa17.66■□□□□ 0.42
CPSF1-214ENST00000622776 VCX3BQ9H321 246 aa17.66■□□□□ 0.42
CPSF1-214ENST00000622776 UBQLN2Q9UHD9 624 aa17.66■□□□□ 0.42
CPSF1-214ENST00000622776 FRAS1Q86XX4 4008 aa17.65■□□□□ 0.42
CPSF1-214ENST00000622776 UBE2CO00762 179 aa17.65■□□□□ 0.42
CPSF1-214ENST00000622776 TSPAN4O14817 238 aa17.65■□□□□ 0.42
CPSF1-214ENST00000622776 UBE2UQ5VVX9 321 aa17.65■□□□□ 0.42
CPSF1-214ENST00000622776 HOGA1Q86XE5 327 aa17.65■□□□□ 0.42
CPSF1-214ENST00000622776 OR10W1Q8NGF6 305 aa17.65■□□□□ 0.42
CPSF1-214ENST00000622776 VN1R17PQ8TDU5 208 aa17.65■□□□□ 0.42
CPSF1-214ENST00000622776 QTRT1Q9BXR0 403 aaKnown RBP17.65■□□□□ 0.42
CPSF1-214ENST00000622776 TRAV18A0A075B6X5 111 aa17.64■□□□□ 0.41
CPSF1-214ENST00000622776 PSMB9P28065 219 aa17.64■□□□□ 0.41
CPSF1-214ENST00000622776 TMEM140Q9NV12 185 aa17.64■□□□□ 0.41
CPSF1-214ENST00000622776 KMT2AQ03164 3969 aa17.63■□□□□ 0.41
CPSF1-214ENST00000622776 CYB5BO43169 146 aa17.63■□□□□ 0.41
CPSF1-214ENST00000622776 MRPS14O60783 128 aaKnown RBP17.63■□□□□ 0.41
CPSF1-214ENST00000622776 FGF2P09038 288 aa17.63■□□□□ 0.41
CPSF1-214ENST00000622776 RPA2P15927 270 aa17.63■□□□□ 0.41
CPSF1-214ENST00000622776 FXYD4P59646 89 aa17.63■□□□□ 0.41
CPSF1-214ENST00000622776 GABARAPL2P60520 117 aa17.63■□□□□ 0.41
CPSF1-214ENST00000622776 GDPD1Q8N9F7 314 aa17.63■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 42.8 ms