RNA–Protein interactions for RNA: ENST00000617451.4

PTPRF-216, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 5 BASIC

Gene PTPRF, Length 1,129 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-216ENST00000617451 MSMO1Q15800 293 aa18.61■□□□□ 0.57
PTPRF-216ENST00000617451 TIMM50Q3ZCQ8 353 aa18.61■□□□□ 0.57
PTPRF-216ENST00000617451 TXNL4BQ9NX01 149 aaKnown RBP18.61■□□□□ 0.57
PTPRF-216ENST00000617451 FRAS1Q86XX4 4008 aa18.61■□□□□ 0.57
PTPRF-216ENST00000617451 TRAV25A0A0B4J276 109 aa18.6■□□□□ 0.57
PTPRF-216ENST00000617451 TNFSF12O43508 249 aa18.6■□□□□ 0.57
PTPRF-216ENST00000617451 OR2B8PP59922 312 aa18.6■□□□□ 0.57
PTPRF-216ENST00000617451 LINC00476Q8WZB0 136 aa18.6■□□□□ 0.57
PTPRF-216ENST00000617451 MARC2Q969Z3 335 aa18.6■□□□□ 0.57
PTPRF-216ENST00000617451 AIFM2Q9BRQ8 373 aa18.6■□□□□ 0.57
PTPRF-216ENST00000617451 CCL28Q9NRJ3 127 aa18.6■□□□□ 0.57
PTPRF-216ENST00000617451 DAPK2Q9UIK4 370 aa18.6■□□□□ 0.57
PTPRF-216ENST00000617451 TPRA1Q86W33 373 aa18.59■□□□□ 0.57
PTPRF-216ENST00000617451 SPAG16Q8N0X2 631 aa18.59■□□□□ 0.57
PTPRF-216ENST00000617451 LGALS14Q8TCE9 139 aa18.59■□□□□ 0.57
PTPRF-216ENST00000617451 SECTM1Q8WVN6 248 aa18.59■□□□□ 0.57
PTPRF-216ENST00000617451 VCX3BQ9H321 246 aa18.59■□□□□ 0.57
PTPRF-216ENST00000617451 HRASLSQ9HDD0 168 aa18.59■□□□□ 0.57
PTPRF-216ENST00000617451 MRPL27Q9P0M9 148 aaKnown RBP18.59■□□□□ 0.57
PTPRF-216ENST00000617451 KMT2AQ03164 3969 aa18.58■□□□□ 0.57
PTPRF-216ENST00000617451 IGLC7A0M8Q6 106 aa18.58■□□□□ 0.56
PTPRF-216ENST00000617451 RBFOX2O43251 390 aaKnown RBP eCLIP18.58■□□□□ 0.561e-6■■■■□ 19.3
PTPRF-216ENST00000617451 FCGR2CP31995 323 aa18.58■□□□□ 0.56
PTPRF-216ENST00000617451 GPR183P32249 361 aa18.58■□□□□ 0.56
PTPRF-216ENST00000617451 HSPA13P48723 471 aa18.58■□□□□ 0.56
PTPRF-216ENST00000617451 ZNF585BQ52M93 769 aa18.58■□□□□ 0.56
PTPRF-216ENST00000617451 UBE2UQ5VVX9 321 aa18.58■□□□□ 0.56
PTPRF-216ENST00000617451 IZUMO2Q6UXV1 221 aa18.58■□□□□ 0.56
PTPRF-216ENST00000617451 RBPMS2Q6ZRY4 209 aaKnown RBP18.58■□□□□ 0.56
PTPRF-216ENST00000617451 OR13F1Q8NGS4 319 aa18.58■□□□□ 0.56
PTPRF-216ENST00000617451 ZNF502Q8TBZ5 544 aa18.58■□□□□ 0.56
PTPRF-216ENST00000617451 PTHLHP12272 177 aa18.57■□□□□ 0.56
PTPRF-216ENST00000617451 ELLP55199 621 aaPredicted RBP18.57■□□□□ 0.56
PTPRF-216ENST00000617451 ARPC4P59998 168 aa18.57■□□□□ 0.56
PTPRF-216ENST00000617451 ZBTB34Q8NCN2 500 aa18.57■□□□□ 0.56
PTPRF-216ENST00000617451 BEST4Q8NFU0 473 aa18.57■□□□□ 0.56
PTPRF-216ENST00000617451 OR1L6Q8NGR2 347 aa18.57■□□□□ 0.56
PTPRF-216ENST00000617451 RHBDL2Q9NX52 303 aa18.57■□□□□ 0.56
PTPRF-216ENST00000617451 RRP15Q9Y3B9 282 aaKnown RBP18.57■□□□□ 0.56
PTPRF-216ENST00000617451 TRAV3A0A0B4J244 114 aa18.56■□□□□ 0.56
PTPRF-216ENST00000617451 MRPS14O60783 128 aaKnown RBP18.56■□□□□ 0.56
PTPRF-216ENST00000617451 TAS2R31P59538 309 aa18.56■□□□□ 0.56
PTPRF-216ENST00000617451 POU2AF1Q16633 256 aa18.56■□□□□ 0.56
PTPRF-216ENST00000617451 SFXN4Q6P4A7 337 aa18.56■□□□□ 0.56
PTPRF-216ENST00000617451 ZNF773Q6PK81 442 aa18.56■□□□□ 0.56
PTPRF-216ENST00000617451 WFDC3Q8IUB2 231 aa18.56■□□□□ 0.56
PTPRF-216ENST00000617451 GVQW1Q8N7I0 195 aa18.56■□□□□ 0.56
PTPRF-216ENST00000617451 SRSF8Q9BRL6 282 aaKnown RBP18.56■□□□□ 0.56
PTPRF-216ENST00000617451 UFC1Q9Y3C8 167 aa18.56■□□□□ 0.56
PTPRF-216ENST00000617451 IGHV3-35A0A0C4DH35 117 aa18.55■□□□□ 0.56
PTPRF-216ENST00000617451 SULT1C2O00338 296 aa18.55■□□□□ 0.56
PTPRF-216ENST00000617451 UPK2O00526 184 aa18.55■□□□□ 0.56
PTPRF-216ENST00000617451 PPYP01298 95 aa18.55■□□□□ 0.56
PTPRF-216ENST00000617451 PTBP1P26599 531 aaKnown RBP eCLIP18.55■□□□□ 0.565e-8■■■■□ 21.9
PTPRF-216ENST00000617451 GABARAPL2P60520 117 aa18.55■□□□□ 0.56
PTPRF-216ENST00000617451 PLET1Q6UQ28 207 aa18.55■□□□□ 0.56
PTPRF-216ENST00000617451 HOGA1Q86XE5 327 aa18.55■□□□□ 0.56
PTPRF-216ENST00000617451 OR2C3Q8N628 320 aa18.55■□□□□ 0.56
PTPRF-216ENST00000617451 ZNF436Q9C0F3 470 aaPredicted RBP18.55■□□□□ 0.56
PTPRF-216ENST00000617451 C5orf66Q9H5L9 145 aa18.55■□□□□ 0.56
PTPRF-216ENST00000617451 THYN1Q9P016 225 aa18.55■□□□□ 0.56
PTPRF-216ENST00000617451 TP53TG1Q9Y2A0 90 aa18.55■□□□□ 0.56
PTPRF-216ENST00000617451 A0A0J9YWU9 116 aa18.54■□□□□ 0.56
PTPRF-216ENST00000617451 CXorf65A6NEN9 183 aa18.54■□□□□ 0.56
PTPRF-216ENST00000617451 HPRT1P00492 218 aa18.54■□□□□ 0.56
PTPRF-216ENST00000617451 NQO2P16083 231 aa18.54■□□□□ 0.56
PTPRF-216ENST00000617451 COMMD5Q9GZQ3 224 aa18.54■□□□□ 0.56
PTPRF-216ENST00000617451 SLC5A7Q9GZV3 580 aa18.54■□□□□ 0.56
PTPRF-216ENST00000617451 TRAV18A0A075B6X5 111 aa18.53■□□□□ 0.56
PTPRF-216ENST00000617451 FGF2P09038 288 aa18.53■□□□□ 0.56
PTPRF-216ENST00000617451 PSMB9P28065 219 aa18.53■□□□□ 0.56
PTPRF-216ENST00000617451 EWSR1Q01844 656 aaKnown RBP eCLIP18.53■□□□□ 0.566e-7■■■■□ 25.8
PTPRF-216ENST00000617451 TNFRSF9Q07011 255 aa18.53■□□□□ 0.56
PTPRF-216ENST00000617451 PMS2P11Q13670 270 aa18.53■□□□□ 0.56
PTPRF-216ENST00000617451 Q6ZWC4 215 aa18.53■□□□□ 0.56
PTPRF-216ENST00000617451 SLC38A6Q8IZM9 456 aa18.53■□□□□ 0.56
PTPRF-216ENST00000617451 SPAG8Q99932 426 aaPredicted RBP18.53■□□□□ 0.56
PTPRF-216ENST00000617451 TGOLN2O43493 480 aa18.52■□□□□ 0.56
PTPRF-216ENST00000617451 LY6G6CO95867 125 aa18.52■□□□□ 0.56
PTPRF-216ENST00000617451 APOC4P55056 127 aa18.52■□□□□ 0.56
PTPRF-216ENST00000617451 CATR1Q13166 79 aa18.52■□□□□ 0.56
PTPRF-216ENST00000617451 SPARTQ8N0X7 666 aa18.52■□□□□ 0.56
PTPRF-216ENST00000617451 OR10W1Q8NGF6 305 aa18.52■□□□□ 0.56
PTPRF-216ENST00000617451 VN1R17PQ8TDU5 208 aa18.52■□□□□ 0.56
PTPRF-216ENST00000617451 TMEM190Q8WZ59 177 aa18.52■□□□□ 0.56
PTPRF-216ENST00000617451 SLC25A38Q96DW6 304 aa18.52■□□□□ 0.56
PTPRF-216ENST00000617451 QTRT1Q9BXR0 403 aaKnown RBP18.52■□□□□ 0.56
PTPRF-216ENST00000617451 SSR3Q9UNL2 185 aa18.52■□□□□ 0.56
PTPRF-216ENST00000617451 NUPR2A6NF83 97 aa18.51■□□□□ 0.55
PTPRF-216ENST00000617451 TSPAN4O14817 238 aa18.51■□□□□ 0.55
PTPRF-216ENST00000617451 SPRY2O43597 315 aa18.51■□□□□ 0.55
PTPRF-216ENST00000617451 SDC2P34741 201 aa18.51■□□□□ 0.55
PTPRF-216ENST00000617451 BMI1P35226 326 aa18.51■□□□□ 0.55
PTPRF-216ENST00000617451 SCAND1P57086 179 aa18.51■□□□□ 0.55
PTPRF-216ENST00000617451 LYG2Q86SG7 212 aa18.51■□□□□ 0.55
PTPRF-216ENST00000617451 OR5H6Q8NGV6 325 aa18.51■□□□□ 0.55
PTPRF-216ENST00000617451 PLEKHA2Q9HB19 425 aa18.51■□□□□ 0.55
PTPRF-216ENST00000617451 TMEM140Q9NV12 185 aa18.51■□□□□ 0.55
PTPRF-216ENST00000617451 RAB26Q9ULW5 256 aa18.51■□□□□ 0.55
PTPRF-216ENST00000617451 ETV7Q9Y603 341 aa18.51■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 12.4 ms