RNA–Protein interactions for RNA: ENST00000588059.5

VPS4B-202, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

TSL 5

Gene VPS4B, Length 1,252 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-202ENST00000588059 TNXAQ16473 311 aa8.21□□□□□ -1.1
VPS4B-202ENST00000588059 TMEM177Q53S58 311 aa8.21□□□□□ -1.1
VPS4B-202ENST00000588059 ZNF57Q68EA5 555 aaPredicted RBP8.21□□□□□ -1.1
VPS4B-202ENST00000588059 SRSF12Q8WXF0 261 aaKnown RBP8.21□□□□□ -1.1
VPS4B-202ENST00000588059 COMMD3Q9UBI1 195 aa8.21□□□□□ -1.1
VPS4B-202ENST00000588059 MLXQ9UH92 298 aa8.21□□□□□ -1.1
VPS4B-202ENST00000588059 TMEM213A2RRL7 107 aa8.2□□□□□ -1.1
VPS4B-202ENST00000588059 LINC00473A8K010 186 aa8.2□□□□□ -1.1
VPS4B-202ENST00000588059 MPPED1O15442 326 aa8.2□□□□□ -1.1
VPS4B-202ENST00000588059 FCGR3BO75015 233 aa8.2□□□□□ -1.1
VPS4B-202ENST00000588059 GGCTO75223 188 aaKnown RBP8.2□□□□□ -1.1
VPS4B-202ENST00000588059 SLC22A5O76082 557 aa8.2□□□□□ -1.1
VPS4B-202ENST00000588059 SCAF4O95104 1147 aaKnown RBP8.2□□□□□ -1.1
VPS4B-202ENST00000588059 OR2C1O95371 312 aa8.2□□□□□ -1.1
VPS4B-202ENST00000588059 APOC4P55056 127 aa8.2□□□□□ -1.1
VPS4B-202ENST00000588059 TAS2R20P59543 309 aa8.2□□□□□ -1.1
VPS4B-202ENST00000588059 PRSS8Q16651 343 aa8.2□□□□□ -1.1
VPS4B-202ENST00000588059 C15orf32Q32M92 178 aa8.2□□□□□ -1.1
VPS4B-202ENST00000588059 VMA21Q3ZAQ7 101 aa8.2□□□□□ -1.1
VPS4B-202ENST00000588059 TM4SF20Q53R12 229 aa8.2□□□□□ -1.1
VPS4B-202ENST00000588059 OR2B11Q5JQS5 317 aa8.2□□□□□ -1.1
VPS4B-202ENST00000588059 GPR107Q5VW38 600 aa8.2□□□□□ -1.1
VPS4B-202ENST00000588059 KCTD9Q7L273 389 aa8.2□□□□□ -1.1
VPS4B-202ENST00000588059 NECAP1Q8NC96 275 aa8.2□□□□□ -1.1
VPS4B-202ENST00000588059 SECTM1Q8WVN6 248 aa8.2□□□□□ -1.1
VPS4B-202ENST00000588059 MRPS26Q9BYN8 205 aaKnown RBP8.2□□□□□ -1.1
VPS4B-202ENST00000588059 NAA50Q9GZZ1 169 aaKnown RBP8.2□□□□□ -1.1
VPS4B-202ENST00000588059 MRPS7Q9Y2R9 242 aaKnown RBP8.2□□□□□ -1.1
VPS4B-202ENST00000588059 RBMX2Q9Y388 322 aaKnown RBP8.2□□□□□ -1.1
VPS4B-202ENST00000588059 PRELID3BQ9Y3B1 194 aa8.2□□□□□ -1.1
VPS4B-202ENST00000588059 SMIM31A0A1B0GVY4 71 aa8.19□□□□□ -1.1
VPS4B-202ENST00000588059 A8MWP6 167 aa8.19□□□□□ -1.1
VPS4B-202ENST00000588059 OR2J3O76001 311 aa8.19□□□□□ -1.1
VPS4B-202ENST00000588059 EIF4EP06730 217 aaKnown RBP8.19□□□□□ -1.1
VPS4B-202ENST00000588059 RORCP51449 518 aa8.19□□□□□ -1.1
VPS4B-202ENST00000588059 FXYD4P59646 89 aa8.19□□□□□ -1.1
VPS4B-202ENST00000588059 CDK10Q15131 360 aa8.19□□□□□ -1.1
VPS4B-202ENST00000588059 ANKRD55Q3KP44 614 aa8.19□□□□□ -1.1
VPS4B-202ENST00000588059 FAM209BQ5JX69 171 aa8.19□□□□□ -1.1
VPS4B-202ENST00000588059 BTNL8Q6UX41 500 aa8.19□□□□□ -1.1
VPS4B-202ENST00000588059 IDO2Q6ZQW0 420 aa8.19□□□□□ -1.1
VPS4B-202ENST00000588059 GPR141Q7Z602 305 aa8.19□□□□□ -1.1
VPS4B-202ENST00000588059 GPHB5Q86YW7 130 aa8.19□□□□□ -1.1
VPS4B-202ENST00000588059 TMEM217Q8N7C4 229 aa8.19□□□□□ -1.1
VPS4B-202ENST00000588059 UXS1Q8NBZ7 420 aa8.19□□□□□ -1.1
VPS4B-202ENST00000588059 OR5AP2Q8NGF4 316 aa8.19□□□□□ -1.1
VPS4B-202ENST00000588059 TCTEX1D2Q8WW35 142 aa8.19□□□□□ -1.1
VPS4B-202ENST00000588059 ACOT12Q8WYK0 555 aa8.19□□□□□ -1.1
VPS4B-202ENST00000588059 RNF183Q96D59 192 aa8.19□□□□□ -1.1
VPS4B-202ENST00000588059 TAS2R8Q9NYW2 309 aa8.19□□□□□ -1.1
VPS4B-202ENST00000588059 FAT2Q9NYQ8 4349 aa8.19□□□□□ -1.1
VPS4B-202ENST00000588059 DYNC1H1Q14204 4646 aaKnown RBP8.18□□□□□ -1.1
VPS4B-202ENST00000588059 FAM25AB3EWG3 89 aa8.18□□□□□ -1.1
VPS4B-202ENST00000588059 FAM25CB3EWG5 89 aa8.18□□□□□ -1.1
VPS4B-202ENST00000588059 FAM25GB3EWG6 89 aa8.18□□□□□ -1.1
VPS4B-202ENST00000588059 UBE2CO00762 179 aa8.18□□□□□ -1.1
VPS4B-202ENST00000588059 TNFSF12O43508 249 aa8.18□□□□□ -1.1
VPS4B-202ENST00000588059 HPGDSO60760 199 aa8.18□□□□□ -1.1
VPS4B-202ENST00000588059 PPYP01298 95 aa8.18□□□□□ -1.1
VPS4B-202ENST00000588059 IGLV2-14P01704 120 aa8.18□□□□□ -1.1
VPS4B-202ENST00000588059 PMP2P02689 132 aa8.18□□□□□ -1.1
VPS4B-202ENST00000588059 PRSS3P35030 304 aa8.18□□□□□ -1.1
VPS4B-202ENST00000588059 UBE2KP61086 200 aa8.18□□□□□ -1.1
VPS4B-202ENST00000588059 RPL30P62888 115 aaKnown RBP8.18□□□□□ -1.1
VPS4B-202ENST00000588059 C10orf55Q5SWW7 151 aa8.18□□□□□ -1.1
VPS4B-202ENST00000588059 MFSD4AQ8N468 514 aa8.18□□□□□ -1.1
VPS4B-202ENST00000588059 TTC9CQ8N5M4 171 aa8.18□□□□□ -1.1
VPS4B-202ENST00000588059 TEX45Q8NA69 505 aa8.18□□□□□ -1.1
VPS4B-202ENST00000588059 OSR1Q8TAX0 266 aaPredicted RBP8.18□□□□□ -1.1
VPS4B-202ENST00000588059 CCDC140Q96MF4 163 aa8.18□□□□□ -1.1
VPS4B-202ENST00000588059 GPHA2Q96T91 129 aa8.18□□□□□ -1.1
VPS4B-202ENST00000588059 HSD17B10Q99714 261 aaKnown RBP8.18□□□□□ -1.1
VPS4B-202ENST00000588059 SLC5A7Q9GZV3 580 aa8.18□□□□□ -1.1
VPS4B-202ENST00000588059 CCL28Q9NRJ3 127 aa8.18□□□□□ -1.1
VPS4B-202ENST00000588059 EHFQ9NZC4 300 aa8.18□□□□□ -1.1
VPS4B-202ENST00000588059 DNAH2Q9P225 4427 aa8.17□□□□□ -1.1
VPS4B-202ENST00000588059 KIR2DL5BA0A0G2JN68 375 aa8.17□□□□□ -1.1
VPS4B-202ENST00000588059 KIR2DL5BA0A0G2JPC4 375 aa8.17□□□□□ -1.1
VPS4B-202ENST00000588059 ACTL6BO94805 426 aa8.17□□□□□ -1.1
VPS4B-202ENST00000588059 GABARAPO95166 117 aa8.17□□□□□ -1.1
VPS4B-202ENST00000588059 IGHV3-23P01764 117 aa8.17□□□□□ -1.1
VPS4B-202ENST00000588059 APOA1P02647 267 aa8.17□□□□□ -1.1
VPS4B-202ENST00000588059 ARL3P36405 182 aa8.17□□□□□ -1.1
VPS4B-202ENST00000588059 RFX2P48378 723 aa8.17□□□□□ -1.1
VPS4B-202ENST00000588059 HERV-K104P61576 105 aa8.17□□□□□ -1.1
VPS4B-202ENST00000588059 CTF1Q16619 201 aa8.17□□□□□ -1.1
VPS4B-202ENST00000588059 MZT2AQ6P582 158 aa8.17□□□□□ -1.1
VPS4B-202ENST00000588059 ZNF66Q6ZN08 573 aa8.17□□□□□ -1.1
VPS4B-202ENST00000588059 C19orf35Q6ZS72 473 aa8.17□□□□□ -1.1
VPS4B-202ENST00000588059 TMEM17Q86X19 198 aa8.17□□□□□ -1.1
VPS4B-202ENST00000588059 SNX29P2Q8IUI4 249 aa8.17□□□□□ -1.1
VPS4B-202ENST00000588059 VKORC1L1Q8N0U8 176 aa8.17□□□□□ -1.1
VPS4B-202ENST00000588059 KIR2DL5AQ8N109 375 aa8.17□□□□□ -1.1
VPS4B-202ENST00000588059 OR1L6Q8NGR2 347 aa8.17□□□□□ -1.1
VPS4B-202ENST00000588059 OR5H2Q8NGV7 314 aa8.17□□□□□ -1.1
VPS4B-202ENST00000588059 OR4S2Q8NH73 311 aa8.17□□□□□ -1.1
VPS4B-202ENST00000588059 KIR2DL5BQ8NHK3 375 aa8.17□□□□□ -1.1
VPS4B-202ENST00000588059 AP3S1Q92572 193 aa8.17□□□□□ -1.1
VPS4B-202ENST00000588059 SPIN2AQ99865 258 aa8.17□□□□□ -1.1
VPS4B-202ENST00000588059 SPIN2BQ9BPZ2 258 aa8.17□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 43.5 ms