RNA–Protein interactions for RNA: ENST00000568539.1

SF3B3-212, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 2

Gene SF3B3, Length 555 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-212ENST00000568539 RRNAD1Q96FB5 475 aaKnown RBP6.7□□□□□ -1.34
SF3B3-212ENST00000568539 CLCC1Q96S66 551 aa6.7□□□□□ -1.34
SF3B3-212ENST00000568539 RASL11BQ9BPW5 248 aa6.7□□□□□ -1.34
SF3B3-212ENST00000568539 NPFFR1Q9GZQ6 430 aa6.7□□□□□ -1.34
SF3B3-212ENST00000568539 RANBP3Q9H6Z4 567 aaPredicted RBP6.7□□□□□ -1.34
SF3B3-212ENST00000568539 ZNF430Q9H8G1 570 aaPredicted RBP6.7□□□□□ -1.34
SF3B3-212ENST00000568539 TMED3Q9Y3Q3 217 aa6.7□□□□□ -1.34
SF3B3-212ENST00000568539 DOCK11Q5JSL3 2073 aa6.7□□□□□ -1.34
SF3B3-212ENST00000568539 IGHV7-81A0A0B4J1V7 117 aa6.69□□□□□ -1.34
SF3B3-212ENST00000568539 TRIM77I1YAP6 450 aa6.69□□□□□ -1.34
SF3B3-212ENST00000568539 CA2P00918 260 aa6.69□□□□□ -1.34
SF3B3-212ENST00000568539 HOXB5P09067 269 aa6.69□□□□□ -1.34
SF3B3-212ENST00000568539 RPL8P62917 257 aaKnown RBP6.69□□□□□ -1.34
SF3B3-212ENST00000568539 SRSF2Q01130 221 aaKnown RBP6.69□□□□□ -1.34
SF3B3-212ENST00000568539 GGNBP1Q5YKI7 109 aa6.69□□□□□ -1.34
SF3B3-212ENST00000568539 ZNF562Q6V9R5 426 aa6.69□□□□□ -1.34
SF3B3-212ENST00000568539 Q6ZNX1 250 aa6.69□□□□□ -1.34
SF3B3-212ENST00000568539 Q6ZRM9 215 aa6.69□□□□□ -1.34
SF3B3-212ENST00000568539 Q6ZS46 218 aa6.69□□□□□ -1.34
SF3B3-212ENST00000568539 MMD2Q8IY49 270 aa6.69□□□□□ -1.34
SF3B3-212ENST00000568539 UXS1Q8NBZ7 420 aa6.69□□□□□ -1.34
SF3B3-212ENST00000568539 RNASE11Q8TAA1 199 aaKnown RBP6.69□□□□□ -1.34
SF3B3-212ENST00000568539 FANCD2OSQ96PS1 177 aa6.69□□□□□ -1.34
SF3B3-212ENST00000568539 HSPB9Q9BQS6 159 aa6.69□□□□□ -1.34
SF3B3-212ENST00000568539 OR51J1Q9H342 316 aa6.69□□□□□ -1.34
SF3B3-212ENST00000568539 TMEM14BQ9NUH8 114 aa6.69□□□□□ -1.34
SF3B3-212ENST00000568539 NSG2Q9Y328 171 aa6.69□□□□□ -1.34
SF3B3-212ENST00000568539 A0A1B0GU03 582 aa6.68□□□□□ -1.34
SF3B3-212ENST00000568539 C15orf61A6NNL5 157 aa6.68□□□□□ -1.34
SF3B3-212ENST00000568539 MPTX1A8MV57 137 aa6.68□□□□□ -1.34
SF3B3-212ENST00000568539 CCSO14618 274 aa6.68□□□□□ -1.34
SF3B3-212ENST00000568539 TSPAN9O75954 239 aa6.68□□□□□ -1.34
SF3B3-212ENST00000568539 SNAPC5O75971 98 aa6.68□□□□□ -1.34
SF3B3-212ENST00000568539 IFNA21P01568 189 aa6.68□□□□□ -1.34
SF3B3-212ENST00000568539 IGHG2P01859 326 aa6.68□□□□□ -1.34
SF3B3-212ENST00000568539 SLC25A6P12236 298 aa6.68□□□□□ -1.34
SF3B3-212ENST00000568539 MYOD1P15172 320 aa6.68□□□□□ -1.34
SF3B3-212ENST00000568539 HLA-GP17693 338 aa6.68□□□□□ -1.34
SF3B3-212ENST00000568539 MAS1LP35410 378 aa6.68□□□□□ -1.34
SF3B3-212ENST00000568539 COMPP49747 757 aaPredicted RBP6.68□□□□□ -1.34
SF3B3-212ENST00000568539 OR2B8PP59922 312 aa6.68□□□□□ -1.34
SF3B3-212ENST00000568539 CX3CL1P78423 397 aa6.68□□□□□ -1.34
SF3B3-212ENST00000568539 NDPQ00604 133 aa6.68□□□□□ -1.34
SF3B3-212ENST00000568539 SMCO1Q147U7 214 aa6.68□□□□□ -1.34
SF3B3-212ENST00000568539 TNXAQ16473 311 aa6.68□□□□□ -1.34
SF3B3-212ENST00000568539 C2orf68Q2NKX9 166 aa6.68□□□□□ -1.34
SF3B3-212ENST00000568539 AARDQ4LEZ3 155 aa6.68□□□□□ -1.34
SF3B3-212ENST00000568539 C10orf55Q5SWW7 151 aa6.68□□□□□ -1.34
SF3B3-212ENST00000568539 ZNF429Q86V71 674 aa6.68□□□□□ -1.34
SF3B3-212ENST00000568539 FOXRED2Q8IWF2 684 aa6.68□□□□□ -1.34
SF3B3-212ENST00000568539 MRPL41Q8IXM3 137 aaKnown RBP6.68□□□□□ -1.34
SF3B3-212ENST00000568539 Q8N2B8 174 aa6.68□□□□□ -1.34
SF3B3-212ENST00000568539 QTRT1Q9BXR0 403 aaKnown RBP6.68□□□□□ -1.34
SF3B3-212ENST00000568539 PRSS22Q9GZN4 317 aa6.68□□□□□ -1.34
SF3B3-212ENST00000568539 MRPL18Q9H0U6 180 aaKnown RBP6.68□□□□□ -1.34
SF3B3-212ENST00000568539 ZNF702PQ9H963 129 aa6.68□□□□□ -1.34
SF3B3-212ENST00000568539 COA4Q9NYJ1 87 aa6.68□□□□□ -1.34
SF3B3-212ENST00000568539 CACNG5Q9UF02 275 aa6.68□□□□□ -1.34
SF3B3-212ENST00000568539 PRNDQ9UKY0 176 aa6.68□□□□□ -1.34
SF3B3-212ENST00000568539 FOXA2Q9Y261 457 aaPredicted RBP6.68□□□□□ -1.34
SF3B3-212ENST00000568539 HIVEP2P31629 2446 aa6.68□□□□□ -1.34
SF3B3-212ENST00000568539 TEX50A0A1B0GTY4 177 aa6.67□□□□□ -1.34
SF3B3-212ENST00000568539 A0A1B0GW64 132 aa6.67□□□□□ -1.34
SF3B3-212ENST00000568539 CGB1A6NKQ9 187 aa6.67□□□□□ -1.34
SF3B3-212ENST00000568539 LINC01548A6NM66 108 aa6.67□□□□□ -1.34
SF3B3-212ENST00000568539 E7EUB6 86 aa6.67□□□□□ -1.34
SF3B3-212ENST00000568539 ATP6V0E1O15342 81 aa6.67□□□□□ -1.34
SF3B3-212ENST00000568539 SSNA1O43805 119 aa6.67□□□□□ -1.34
SF3B3-212ENST00000568539 PITX3O75364 302 aa6.67□□□□□ -1.34
SF3B3-212ENST00000568539 ACTL6BO94805 426 aa6.67□□□□□ -1.34
SF3B3-212ENST00000568539 CRYBA1P05813 215 aa6.67□□□□□ -1.34
SF3B3-212ENST00000568539 SULT1A3P0DMM9 295 aa6.67□□□□□ -1.34
SF3B3-212ENST00000568539 SULT1A4P0DMN0 295 aa6.67□□□□□ -1.34
SF3B3-212ENST00000568539 EGR2P11161 476 aaPredicted RBP6.67□□□□□ -1.34
SF3B3-212ENST00000568539 GNB1P62873 340 aa6.67□□□□□ -1.34
SF3B3-212ENST00000568539 FXYD3Q14802 87 aa6.67□□□□□ -1.34
SF3B3-212ENST00000568539 C9orf152Q5JTZ5 239 aa6.67□□□□□ -1.34
SF3B3-212ENST00000568539 Q6ZSV7 163 aa6.67□□□□□ -1.34
SF3B3-212ENST00000568539 SLC35E3Q7Z769 313 aa6.67□□□□□ -1.34
SF3B3-212ENST00000568539 OR5M8Q8NGP6 311 aa6.67□□□□□ -1.34
SF3B3-212ENST00000568539 OR5B3Q8NH48 314 aa6.67□□□□□ -1.34
SF3B3-212ENST00000568539 OR4A16Q8NH70 328 aa6.67□□□□□ -1.34
SF3B3-212ENST00000568539 SPATA3Q8NHX4 192 aa6.67□□□□□ -1.34
SF3B3-212ENST00000568539 SRSF12Q8WXF0 261 aaKnown RBP6.67□□□□□ -1.34
SF3B3-212ENST00000568539 ARPC1AQ92747 370 aa6.67□□□□□ -1.34
SF3B3-212ENST00000568539 TAF15Q92804 592 aaKnown RBP eCLIP6.67□□□□□ -1.34
SF3B3-212ENST00000568539 OR10C1Q96KK4 312 aa6.67□□□□□ -1.34
SF3B3-212ENST00000568539 SPIN2AQ99865 258 aa6.67□□□□□ -1.34
SF3B3-212ENST00000568539 SPIN2BQ9BPZ2 258 aa6.67□□□□□ -1.34
SF3B3-212ENST00000568539 COMMD5Q9GZQ3 224 aa6.67□□□□□ -1.34
SF3B3-212ENST00000568539 CTNNBIP1Q9NSA3 81 aaPredicted RBP6.67□□□□□ -1.34
SF3B3-212ENST00000568539 FKBP11Q9NYL4 201 aa6.67□□□□□ -1.34
SF3B3-212ENST00000568539 ZNF257Q9Y2Q1 563 aa6.67□□□□□ -1.34
SF3B3-212ENST00000568539 FBXO7Q9Y3I1 522 aa6.67□□□□□ -1.34
SF3B3-212ENST00000568539 OR51B2Q9Y5P1 312 aa6.67□□□□□ -1.34
SF3B3-212ENST00000568539 MEGF8Q7Z7M0 2845 aa6.66□□□□□ -1.34
SF3B3-212ENST00000568539 C13orf42A0A1B0GVH6 325 aa6.66□□□□□ -1.34
SF3B3-212ENST00000568539 MSGN1A6NI15 193 aa6.66□□□□□ -1.34
SF3B3-212ENST00000568539 TEX22C9J3V5 150 aa6.66□□□□□ -1.34
SF3B3-212ENST00000568539 F8W735 103 aaPredicted RBP6.66□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms