RNA–Protein interactions for RNA: ENST00000560202.1

USP3-218, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 1,681 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-218ENST00000560202 RAB32Q13637 225 aa9.06□□□□□ -0.96
USP3-218ENST00000560202 TMEM177Q53S58 311 aa9.06□□□□□ -0.96
USP3-218ENST00000560202 SSX9Q7RTT3 188 aa9.06□□□□□ -0.96
USP3-218ENST00000560202 H2BFWTQ7Z2G1 175 aa9.06□□□□□ -0.96
USP3-218ENST00000560202 CBLN2Q8IUK8 224 aa9.06□□□□□ -0.96
USP3-218ENST00000560202 VKORC1L1Q8N0U8 176 aa9.06□□□□□ -0.96
USP3-218ENST00000560202 OR4D5Q8NGN0 318 aa9.06□□□□□ -0.96
USP3-218ENST00000560202 OSR1Q8TAX0 266 aaPredicted RBP9.06□□□□□ -0.96
USP3-218ENST00000560202 FLYWCH2Q96CP2 140 aaKnown RBP9.06□□□□□ -0.96
USP3-218ENST00000560202 NIT2Q9NQR4 276 aa9.06□□□□□ -0.96
USP3-218ENST00000560202 CACNG5Q9UF02 275 aa9.06□□□□□ -0.96
USP3-218ENST00000560202 ABCA2Q9BZC7 2435 aa9.06□□□□□ -0.96
USP3-218ENST00000560202 MED13LQ71F56 2210 aa9.06□□□□□ -0.96
USP3-218ENST00000560202 CSMD1Q96PZ7 3565 aa9.05□□□□□ -0.96
USP3-218ENST00000560202 IGHV3-72A0A0B4J1Y9 119 aa9.05□□□□□ -0.96
USP3-218ENST00000560202 COLCA2A8K830 154 aa9.05□□□□□ -0.96
USP3-218ENST00000560202 OOSP1A8MZH6 123 aa9.05□□□□□ -0.96
USP3-218ENST00000560202 NPFFO15130 113 aa9.05□□□□□ -0.96
USP3-218ENST00000560202 PITX3O75364 302 aa9.05□□□□□ -0.96
USP3-218ENST00000560202 SCGB1D2O95969 90 aa9.05□□□□□ -0.96
USP3-218ENST00000560202 HRASP01112 189 aa9.05□□□□□ -0.96
USP3-218ENST00000560202 MBPP02686 304 aaPredicted RBP9.05□□□□□ -0.96
USP3-218ENST00000560202 ADCYAP1P18509 176 aa9.05□□□□□ -0.96
USP3-218ENST00000560202 HABP2Q14520 560 aaPredicted RBP9.05□□□□□ -0.96
USP3-218ENST00000560202 SSX2Q16385 188 aa9.05□□□□□ -0.96
USP3-218ENST00000560202 MIDNQ504T8 468 aa9.05□□□□□ -0.96
USP3-218ENST00000560202 FAM74A1Q5RGS3 127 aa9.05□□□□□ -0.96
USP3-218ENST00000560202 BAP18Q8IXM2 172 aa9.05□□□□□ -0.96
USP3-218ENST00000560202 OR4C13Q8NGP0 309 aa9.05□□□□□ -0.96
USP3-218ENST00000560202 MALSU1Q96EH3 234 aa9.05□□□□□ -0.96
USP3-218ENST00000560202 RHOVQ96L33 236 aa9.05□□□□□ -0.96
USP3-218ENST00000560202 TMPRSS5Q9H3S3 457 aa9.05□□□□□ -0.96
USP3-218ENST00000560202 TRAV40A0A0B4J280 105 aa9.04□□□□□ -0.96
USP3-218ENST00000560202 IGHV1-69DA0A0B4J2H0 117 aa9.04□□□□□ -0.96
USP3-218ENST00000560202 SRRM4A7MD48 611 aaKnown RBP9.04□□□□□ -0.96
USP3-218ENST00000560202 H0YIZ8 118 aa9.04□□□□□ -0.96
USP3-218ENST00000560202 J3QLI3 93 aa9.04□□□□□ -0.96
USP3-218ENST00000560202 TIMM23O14925 209 aa9.04□□□□□ -0.96
USP3-218ENST00000560202 IGHV1-69P01742 117 aa9.04□□□□□ -0.96
USP3-218ENST00000560202 SAA4P35542 130 aa9.04□□□□□ -0.96
USP3-218ENST00000560202 NKX2-1P43699 371 aaPredicted RBP9.04□□□□□ -0.96
USP3-218ENST00000560202 CAV2P51636 162 aa9.04□□□□□ -0.96
USP3-218ENST00000560202 S100A10P60903 97 aa9.04□□□□□ -0.96
USP3-218ENST00000560202 POU2AF1Q16633 256 aa9.04□□□□□ -0.96
USP3-218ENST00000560202 CXorf66Q5JRM2 361 aaPredicted RBP9.04□□□□□ -0.96
USP3-218ENST00000560202 CCDC144NLQ6NUI1 221 aa9.04□□□□□ -0.96
USP3-218ENST00000560202 STX12Q86Y82 276 aa9.04□□□□□ -0.96
USP3-218ENST00000560202 FOXRED2Q8IWF2 684 aa9.04□□□□□ -0.96
USP3-218ENST00000560202 DYNAPQ8N1N2 210 aa9.04□□□□□ -0.96
USP3-218ENST00000560202 COMMD1Q8N668 190 aa9.04□□□□□ -0.96
USP3-218ENST00000560202 AJUBAQ96IF1 538 aa9.04□□□□□ -0.96
USP3-218ENST00000560202 HARBI1Q96MB7 349 aa9.04□□□□□ -0.96
USP3-218ENST00000560202 RNF126Q9BV68 326 aa9.04□□□□□ -0.96
USP3-218ENST00000560202 TREM1Q9NP99 234 aa9.04□□□□□ -0.96
USP3-218ENST00000560202 TMEM140Q9NV12 185 aa9.04□□□□□ -0.96
USP3-218ENST00000560202 ITPR2Q14571 2701 aa9.04□□□□□ -0.96
USP3-218ENST00000560202 IGHV3OR16-10A0A075B7F0 116 aa9.04□□□□□ -0.96
USP3-218ENST00000560202 FAM90A9PA6NNJ1 464 aa9.04□□□□□ -0.96
USP3-218ENST00000560202 K7EPK0 472 aa9.04□□□□□ -0.96
USP3-218ENST00000560202 ST8SIA3O43173 380 aa9.04□□□□□ -0.96
USP3-218ENST00000560202 AVPP01185 164 aa9.04□□□□□ -0.96
USP3-218ENST00000560202 OR9G9P0C7N8 305 aa9.04□□□□□ -0.96
USP3-218ENST00000560202 PET100P0DJ07 73 aa9.04□□□□□ -0.96
USP3-218ENST00000560202 RAB5CP51148 216 aa9.04□□□□□ -0.96
USP3-218ENST00000560202 ARHGDIBP52566 201 aa9.04□□□□□ -0.96
USP3-218ENST00000560202 RPS16P62249 146 aaKnown RBP9.04□□□□□ -0.96
USP3-218ENST00000560202 SNRPEP62304 92 aaKnown RBP9.04□□□□□ -0.96
USP3-218ENST00000560202 ID3Q02535 119 aa9.04□□□□□ -0.96
USP3-218ENST00000560202 GPR157Q5UAW9 335 aa9.04□□□□□ -0.96
USP3-218ENST00000560202 CYB5R2Q6BCY4 276 aa9.04□□□□□ -0.96
USP3-218ENST00000560202 OR4A47Q6IF82 309 aa9.04□□□□□ -0.96
USP3-218ENST00000560202 PRSS54Q6PEW0 395 aa9.04□□□□□ -0.96
USP3-218ENST00000560202 CIARTQ8N365 385 aaPredicted RBP9.04□□□□□ -0.96
USP3-218ENST00000560202 FAM71E2Q8N5Q1 922 aa9.04□□□□□ -0.96
USP3-218ENST00000560202 CFHR4Q92496 578 aa9.04□□□□□ -0.96
USP3-218ENST00000560202 CTNNBIP1Q9NSA3 81 aaPredicted RBP9.04□□□□□ -0.96
USP3-218ENST00000560202 OR5AC2Q9NZP5 309 aa9.04□□□□□ -0.96
USP3-218ENST00000560202 LSM5Q9Y4Y9 91 aaKnown RBP9.04□□□□□ -0.96
USP3-218ENST00000560202 TAAR5O14804 337 aa9.03□□□□□ -0.96
USP3-218ENST00000560202 DEDDO75618 318 aa9.03□□□□□ -0.96
USP3-218ENST00000560202 NXPH3O95157 252 aa9.03□□□□□ -0.96
USP3-218ENST00000560202 IGHV4-38-2P0DP08 117 aa9.03□□□□□ -0.96
USP3-218ENST00000560202 LYL1P12980 280 aa9.03□□□□□ -0.96
USP3-218ENST00000560202 CD1BP29016 333 aa9.03□□□□□ -0.96
USP3-218ENST00000560202 LGALS7P47929 136 aa9.03□□□□□ -0.96
USP3-218ENST00000560202 RUSC1-AS1Q66K80 236 aa9.03□□□□□ -0.96
USP3-218ENST00000560202 RITA1Q96K30 269 aa9.03□□□□□ -0.96
USP3-218ENST00000560202 NSG2Q9Y328 171 aa9.03□□□□□ -0.96
USP3-218ENST00000560202 TRAV3A0A0B4J244 114 aa9.02□□□□□ -0.97
USP3-218ENST00000560202 RBMXL2O75526 392 aaKnown RBP9.02□□□□□ -0.97
USP3-218ENST00000560202 VENTXO95231 258 aa9.02□□□□□ -0.97
USP3-218ENST00000560202 IL6RP08887 468 aaPredicted RBP9.02□□□□□ -0.97
USP3-218ENST00000560202 SAA1P0DJI8 122 aaPredicted RBP9.02□□□□□ -0.97
USP3-218ENST00000560202 NPBWR1P48145 328 aa9.02□□□□□ -0.97
USP3-218ENST00000560202 RAB2AP61019 212 aa9.02□□□□□ -0.97
USP3-218ENST00000560202 RELBQ01201 579 aa9.02□□□□□ -0.97
USP3-218ENST00000560202 LBHQ53QV2 105 aaPredicted RBP9.02□□□□□ -0.97
USP3-218ENST00000560202 KLF17Q5JT82 389 aaPredicted RBP9.02□□□□□ -0.97
USP3-218ENST00000560202 BRD3OSQ6XYD6 125 aa9.02□□□□□ -0.97
USP3-218ENST00000560202 C1QL4Q86Z23 238 aa9.02□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms