RNA–Protein interactions for RNA: ENST00000541488.1

PRKDC-210, Transcript of protein kinase, DNA-activated, catalytic subunit, humanhuman

TSL 3

Gene PRKDC, Length 719 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDC-210ENST00000541488 ATP6V0CP27449 155 aa0.96□□□□□ -2.26
PRKDC-210ENST00000541488 KDELR2P33947 212 aa0.96□□□□□ -2.26
PRKDC-210ENST00000541488 LPAR6P43657 344 aa0.96□□□□□ -2.26
PRKDC-210ENST00000541488 GABRA4P48169 554 aa0.96□□□□□ -2.26
PRKDC-210ENST00000541488 PSMB3P49720 205 aa0.96□□□□□ -2.26
PRKDC-210ENST00000541488 RWDD2BP57060 319 aa0.96□□□□□ -2.26
PRKDC-210ENST00000541488 SLC35A2P78381 396 aa0.96□□□□□ -2.26
PRKDC-210ENST00000541488 TRMT12Q53H54 448 aaKnown RBP0.96□□□□□ -2.26
PRKDC-210ENST00000541488 TIMM23BQ5SRD1 257 aa0.96□□□□□ -2.26
PRKDC-210ENST00000541488 SCGB1D4Q6XE38 83 aa0.96□□□□□ -2.26
PRKDC-210ENST00000541488 CCDC121Q6ZUS5 278 aa0.96□□□□□ -2.26
PRKDC-210ENST00000541488 SPATA24Q86W54 205 aa0.96□□□□□ -2.26
PRKDC-210ENST00000541488 CRLF3Q8IUI8 442 aa0.96□□□□□ -2.26
PRKDC-210ENST00000541488 C2orf73Q8N5S3 287 aaPredicted RBP0.96□□□□□ -2.26
PRKDC-210ENST00000541488 OR52E4Q8NGH9 312 aa0.96□□□□□ -2.26
PRKDC-210ENST00000541488 OR5C1Q8NGR4 320 aa0.96□□□□□ -2.26
PRKDC-210ENST00000541488 ERMNQ8TAM6 284 aa0.96□□□□□ -2.26
PRKDC-210ENST00000541488 TMBIM1Q969X1 311 aa0.96□□□□□ -2.26
PRKDC-210ENST00000541488 TMEM56Q96MV1 263 aa0.96□□□□□ -2.26
PRKDC-210ENST00000541488 FAM210AQ96ND0 272 aa0.96□□□□□ -2.26
PRKDC-210ENST00000541488 UPK3BQ9BT76 320 aa0.96□□□□□ -2.26
PRKDC-210ENST00000541488 MED18Q9BUE0 208 aa0.96□□□□□ -2.26
PRKDC-210ENST00000541488 C1QTNF6Q9BXI9 259 aa0.96□□□□□ -2.26
PRKDC-210ENST00000541488 CXCL16Q9H2A7 254 aa0.96□□□□□ -2.26
PRKDC-210ENST00000541488 CHMP4BQ9H444 224 aaKnown RBP0.96□□□□□ -2.26
PRKDC-210ENST00000541488 TXNL4BQ9NX01 149 aaKnown RBP0.96□□□□□ -2.26
PRKDC-210ENST00000541488 C1orf109Q9NX04 203 aa0.96□□□□□ -2.26
PRKDC-210ENST00000541488 MGAM2Q2M2H8 2515 aa0.96□□□□□ -2.26
PRKDC-210ENST00000541488 DOCK1Q14185 1865 aa0.96□□□□□ -2.26
PRKDC-210ENST00000541488 PDCD11Q14690 1871 aaKnown RBP0.96□□□□□ -2.26
PRKDC-210ENST00000541488 NAV1Q8NEY1 1877 aa0.96□□□□□ -2.26
PRKDC-210ENST00000541488 MPDZO75970 2070 aa0.96□□□□□ -2.26
PRKDC-210ENST00000541488 TNRC6BQ9UPQ9 1833 aaKnown RBP0.96□□□□□ -2.26
PRKDC-210ENST00000541488 MICAL3Q7RTP6 2002 aa0.96□□□□□ -2.26
PRKDC-210ENST00000541488 HERC2O95714 4834 aa0.96□□□□□ -2.26
PRKDC-210ENST00000541488 KIAA1109Q2LD37 5005 aa0.96□□□□□ -2.26
PRKDC-210ENST00000541488 ABCC11Q96J66 1382 aa0.96□□□□□ -2.26
PRKDC-210ENST00000541488 AHCTF1Q8WYP5 2266 aa0.95□□□□□ -2.26
PRKDC-210ENST00000541488 CLUHO75153 1309 aa0.95□□□□□ -2.26
PRKDC-210ENST00000541488 ANK2Q01484 3957 aa0.95□□□□□ -2.26
PRKDC-210ENST00000541488 MAP1AP78559 2803 aaPredicted RBP0.95□□□□□ -2.26
PRKDC-210ENST00000541488 SPAG17Q6Q759 2223 aa0.95□□□□□ -2.26
PRKDC-210ENST00000541488 ASXL3Q9C0F0 2248 aa0.95□□□□□ -2.26
PRKDC-210ENST00000541488 SPTBN1Q01082 2364 aaKnown RBP0.95□□□□□ -2.26
PRKDC-210ENST00000541488 FSIP2Q5CZC0 6907 aa0.95□□□□□ -2.26
PRKDC-210ENST00000541488 A0A1W2PQL4 384 aaPredicted RBP0.95□□□□□ -2.26
PRKDC-210ENST00000541488 ERICH2A1L162 156 aa0.95□□□□□ -2.26
PRKDC-210ENST00000541488 GRIFINA4D1Z8 144 aa0.95□□□□□ -2.26
PRKDC-210ENST00000541488 LINC00862A6NCI5 91 aa0.95□□□□□ -2.26
PRKDC-210ENST00000541488 ERICH4A6NGS2 130 aa0.95□□□□□ -2.26
PRKDC-210ENST00000541488 IQCF5A8MTL0 148 aa0.95□□□□□ -2.26
PRKDC-210ENST00000541488 F8VZ95 297 aa0.95□□□□□ -2.26
PRKDC-210ENST00000541488 MKRN2OSH3BPM6 223 aa0.95□□□□□ -2.26
PRKDC-210ENST00000541488 GOLGA8RI6L899 631 aa0.95□□□□□ -2.26
PRKDC-210ENST00000541488 MPZL2O60487 215 aa0.95□□□□□ -2.26
PRKDC-210ENST00000541488 SCN2BO60939 215 aa0.95□□□□□ -2.26
PRKDC-210ENST00000541488 CDK14O94921 469 aa0.95□□□□□ -2.26
PRKDC-210ENST00000541488 ZNF7P17097 686 aaPredicted RBP0.95□□□□□ -2.26
PRKDC-210ENST00000541488 PVALBP20472 110 aaPredicted RBP0.95□□□□□ -2.26
PRKDC-210ENST00000541488 SYT1P21579 422 aa0.95□□□□□ -2.26
PRKDC-210ENST00000541488 CFL1P23528 166 aaKnown RBP0.95□□□□□ -2.26
PRKDC-210ENST00000541488 AGTR1P30556 359 aa0.95□□□□□ -2.26
PRKDC-210ENST00000541488 OPRM1P35372 400 aa0.95□□□□□ -2.26
PRKDC-210ENST00000541488 OR1E2P47887 323 aa0.95□□□□□ -2.26
PRKDC-210ENST00000541488 BSPH1Q075Z2 132 aa0.95□□□□□ -2.26
PRKDC-210ENST00000541488 SLAMF1Q13291 335 aa0.95□□□□□ -2.26
PRKDC-210ENST00000541488 MRPL51Q4U2R6 128 aaKnown RBP0.95□□□□□ -2.26
PRKDC-210ENST00000541488 CLEC6AQ6EIG7 209 aa0.95□□□□□ -2.26
PRKDC-210ENST00000541488 FAM45BPQ6NSW5 357 aa0.95□□□□□ -2.26
PRKDC-210ENST00000541488 NATD1Q8N6N6 113 aa0.95□□□□□ -2.26
PRKDC-210ENST00000541488 ATP6V1C2Q8NEY4 427 aa0.95□□□□□ -2.26
PRKDC-210ENST00000541488 ZNRF2Q8NHG8 242 aa0.95□□□□□ -2.26
PRKDC-210ENST00000541488 SUN5Q8TC36 379 aa0.95□□□□□ -2.26
PRKDC-210ENST00000541488 MBOAT7Q96N66 472 aa0.95□□□□□ -2.26
PRKDC-210ENST00000541488 TXNDC17Q9BRA2 123 aa0.95□□□□□ -2.26
PRKDC-210ENST00000541488 CDCA4Q9BXL8 241 aa0.95□□□□□ -2.26
PRKDC-210ENST00000541488 EIF5A2Q9GZV4 153 aaKnown RBP0.95□□□□□ -2.26
PRKDC-210ENST00000541488 GLS2Q9UI32 602 aa0.95□□□□□ -2.26
PRKDC-210ENST00000541488 MRPS16Q9Y3D3 137 aaKnown RBP0.95□□□□□ -2.26
PRKDC-210ENST00000541488 OR51B4Q9Y5P0 310 aa0.95□□□□□ -2.26
PRKDC-210ENST00000541488 SNX10Q9Y5X0 201 aa0.95□□□□□ -2.26
PRKDC-210ENST00000541488 ZFC3H1O60293 1989 aaKnown RBP0.95□□□□□ -2.26
PRKDC-210ENST00000541488 PRKDCP78527 4128 aaKnown RBP0.95□□□□□ -2.26
PRKDC-210ENST00000541488 APC2O95996 2303 aa0.95□□□□□ -2.26
PRKDC-210ENST00000541488 SIPA1L3O60292 1781 aaPredicted RBP0.95□□□□□ -2.26
PRKDC-210ENST00000541488 CSMD3Q7Z407 3707 aa0.95□□□□□ -2.26
PRKDC-210ENST00000541488 MYH7BA7E2Y1 1941 aa0.95□□□□□ -2.26
PRKDC-210ENST00000541488 MYLKQ15746 1914 aa0.95□□□□□ -2.26
PRKDC-210ENST00000541488 ABCC12Q96J65 1359 aa0.95□□□□□ -2.26
PRKDC-210ENST00000541488 NSD1Q96L73 2696 aaPredicted RBP0.94□□□□□ -2.26
PRKDC-210ENST00000541488 ACACAQ13085 2346 aa0.94□□□□□ -2.26
PRKDC-210ENST00000541488 TET1Q8NFU7 2136 aa0.94□□□□□ -2.26
PRKDC-210ENST00000541488 MUC2Q02817 5179 aa0.94□□□□□ -2.26
PRKDC-210ENST00000541488 A0A0J9YX75 114 aa0.94□□□□□ -2.26
PRKDC-210ENST00000541488 SPAARA0A1B0GVQ0 90 aa0.94□□□□□ -2.26
PRKDC-210ENST00000541488 TRAPPC3O43617 180 aa0.94□□□□□ -2.26
PRKDC-210ENST00000541488 STK16O75716 305 aa0.94□□□□□ -2.26
PRKDC-210ENST00000541488 BRI3O95415 125 aa0.94□□□□□ -2.26
PRKDC-210ENST00000541488 IGLV3-27P01718 113 aa0.94□□□□□ -2.26
PRKDC-210ENST00000541488 CD7P09564 240 aa0.94□□□□□ -2.26
Retrieved 100 of 20,778 RNA–protein pairs in 56.7 ms