RNA–Protein interactions for RNA: ENST00000514305.5

USP53-208, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 2

Gene USP53, Length 504 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-208ENST00000514305 RPL8P62917 257 aaKnown RBP15.91■□□□□ 0.14
USP53-208ENST00000514305 SLC35B1P78383 322 aa15.91■□□□□ 0.14
USP53-208ENST00000514305 PPP1R1AQ13522 171 aa15.91■□□□□ 0.14
USP53-208ENST00000514305 PRSS8Q16651 343 aa15.91■□□□□ 0.14
USP53-208ENST00000514305 TMEM268Q5VZI3 342 aa15.91■□□□□ 0.14
USP53-208ENST00000514305 NRARPQ7Z6K4 114 aa15.91■□□□□ 0.14
USP53-208ENST00000514305 LYG2Q86SG7 212 aa15.91■□□□□ 0.14
USP53-208ENST00000514305 VKORC1L1Q8N0U8 176 aa15.91■□□□□ 0.14
USP53-208ENST00000514305 OR4A16Q8NH70 328 aa15.91■□□□□ 0.14
USP53-208ENST00000514305 TMEM68Q96MH6 324 aa15.91■□□□□ 0.14
USP53-208ENST00000514305 C9orf170A2RU37 121 aa15.9■□□□□ 0.14
USP53-208ENST00000514305 UPK2O00526 184 aa15.9■□□□□ 0.14
USP53-208ENST00000514305 RBMXL2O75526 392 aaKnown RBP15.9■□□□□ 0.14
USP53-208ENST00000514305 MECP2P51608 486 aaKnown RBP15.9■□□□□ 0.14
USP53-208ENST00000514305 GNB1P62873 340 aa15.9■□□□□ 0.14
USP53-208ENST00000514305 SUPT4H1P63272 117 aaKnown RBP15.9■□□□□ 0.14
USP53-208ENST00000514305 CX3CL1P78423 397 aa15.9■□□□□ 0.14
USP53-208ENST00000514305 FXYD3Q14802 87 aa15.9■□□□□ 0.14
USP53-208ENST00000514305 TNXAQ16473 311 aa15.9■□□□□ 0.14
USP53-208ENST00000514305 RGS21Q2M5E4 152 aa15.9■□□□□ 0.14
USP53-208ENST00000514305 CASTOR1Q8WTX7 329 aa15.9■□□□□ 0.14
USP53-208ENST00000514305 SEC22AQ96IW7 307 aa15.9■□□□□ 0.14
USP53-208ENST00000514305 COMMD5Q9GZQ3 224 aa15.9■□□□□ 0.14
USP53-208ENST00000514305 ZNF580Q9UK33 172 aa15.9■□□□□ 0.14
USP53-208ENST00000514305 PRNDQ9UKY0 176 aa15.9■□□□□ 0.14
USP53-208ENST00000514305 IGHV7-81A0A0B4J1V7 117 aa15.89■□□□□ 0.13
USP53-208ENST00000514305 A0A0B4J2A0 478 aa15.89■□□□□ 0.13
USP53-208ENST00000514305 INMT-MINDY4F8WBC2 141 aa15.89■□□□□ 0.13
USP53-208ENST00000514305 DUS4LO95620 317 aaKnown RBP15.89■□□□□ 0.13
USP53-208ENST00000514305 ANXA7P20073 488 aaKnown RBP15.89■□□□□ 0.13
USP53-208ENST00000514305 VDAC1P21796 283 aa15.89■□□□□ 0.13
USP53-208ENST00000514305 THOC7Q6I9Y2 204 aaKnown RBP15.89■□□□□ 0.13
USP53-208ENST00000514305 CENPVQ7Z7K6 275 aaPredicted RBP15.89■□□□□ 0.13
USP53-208ENST00000514305 C1QL4Q86Z23 238 aa15.89■□□□□ 0.13
USP53-208ENST00000514305 MRPL41Q8IXM3 137 aaKnown RBP15.89■□□□□ 0.13
USP53-208ENST00000514305 SELENOHQ8IZQ5 122 aaKnown RBP15.89■□□□□ 0.13
USP53-208ENST00000514305 KLHDC1Q8N7A1 406 aa15.89■□□□□ 0.13
USP53-208ENST00000514305 ARPC1AQ92747 370 aa15.89■□□□□ 0.13
USP53-208ENST00000514305 LSM10Q969L4 123 aaKnown RBP15.89■□□□□ 0.13
USP53-208ENST00000514305 PHB2Q99623 299 aa15.89■□□□□ 0.13
USP53-208ENST00000514305 SPIN2AQ99865 258 aa15.89■□□□□ 0.13
USP53-208ENST00000514305 SPIN2BQ9BPZ2 258 aa15.89■□□□□ 0.13
USP53-208ENST00000514305 PDCD10Q9BUL8 212 aa15.89■□□□□ 0.13
USP53-208ENST00000514305 ZNF430Q9H8G1 570 aaPredicted RBP15.89■□□□□ 0.13
USP53-208ENST00000514305 PARP11Q9NR21 331 aa15.89■□□□□ 0.13
USP53-208ENST00000514305 SHPKQ9UHJ6 478 aa15.89■□□□□ 0.13
USP53-208ENST00000514305 IGF1P05019 195 aa15.88■□□□□ 0.13
USP53-208ENST00000514305 IL5P05113 134 aa15.88■□□□□ 0.13
USP53-208ENST00000514305 HLA-GP17693 338 aa15.88■□□□□ 0.13
USP53-208ENST00000514305 DHRS2Q13268 280 aa15.88■□□□□ 0.13
USP53-208ENST00000514305 LRTM2Q8N967 370 aa15.88■□□□□ 0.13
USP53-208ENST00000514305 RBMXL1Q96E39 390 aaKnown RBP15.88■□□□□ 0.13
USP53-208ENST00000514305 SH2D7A6NKC9 451 aaPredicted RBP15.87■□□□□ 0.13
USP53-208ENST00000514305 FCN1O00602 326 aa15.87■□□□□ 0.13
USP53-208ENST00000514305 IFNA21P01568 189 aa15.87■□□□□ 0.13
USP53-208ENST00000514305 IGKV1-39P01597 117 aa15.87■□□□□ 0.13
USP53-208ENST00000514305 IGKV1D-39P04432 117 aa15.87■□□□□ 0.13
USP53-208ENST00000514305 IL6RP08887 468 aaPredicted RBP15.87■□□□□ 0.13
USP53-208ENST00000514305 RPL27AP46776 148 aaKnown RBP15.87■□□□□ 0.13
USP53-208ENST00000514305 COMMD1Q8N668 190 aa15.87■□□□□ 0.13
USP53-208ENST00000514305 C11orf44Q8N8P7 122 aa15.87■□□□□ 0.13
USP53-208ENST00000514305 HSPB9Q9BQS6 159 aa15.87■□□□□ 0.13
USP53-208ENST00000514305 MARVELD1Q9BSK0 173 aa15.87■□□□□ 0.13
USP53-208ENST00000514305 TPSG1Q9NRR2 321 aa15.87■□□□□ 0.13
USP53-208ENST00000514305 TMED3Q9Y3Q3 217 aa15.87■□□□□ 0.13
USP53-208ENST00000514305 AKIRIN2Q53H80 203 aa15.86■□□□□ 0.13
USP53-208ENST00000514305 HSD17B13Q7Z5P4 300 aaPredicted RBP15.86■□□□□ 0.13
USP53-208ENST00000514305 STPG2Q8N412 459 aa15.86■□□□□ 0.13
USP53-208ENST00000514305 OR1L8Q8NGR8 309 aa15.86■□□□□ 0.13
USP53-208ENST00000514305 OR5B3Q8NH48 314 aa15.86■□□□□ 0.13
USP53-208ENST00000514305 ZNF431Q8TF32 576 aaPredicted RBP15.86■□□□□ 0.13
USP53-208ENST00000514305 CRIP2P52943 208 aaPredicted RBP15.85■□□□□ 0.13
USP53-208ENST00000514305 PJVKQ0ZLH3 352 aa15.85■□□□□ 0.13
USP53-208ENST00000514305 Q6ZS46 218 aa15.85■□□□□ 0.13
USP53-208ENST00000514305 SLC35G3Q8N808 338 aa15.85■□□□□ 0.13
USP53-208ENST00000514305 MINDY2Q8NBR6 621 aa15.85■□□□□ 0.13
USP53-208ENST00000514305 GRPEL2Q8TAA5 225 aa15.85■□□□□ 0.13
USP53-208ENST00000514305 MITD1Q8WV92 249 aa15.85■□□□□ 0.13
USP53-208ENST00000514305 SRSF12Q8WXF0 261 aaKnown RBP15.85■□□□□ 0.13
USP53-208ENST00000514305 SRSF8Q9BRL6 282 aaKnown RBP15.85■□□□□ 0.13
USP53-208ENST00000514305 CTNNBIP1Q9NSA3 81 aaPredicted RBP15.85■□□□□ 0.13
USP53-208ENST00000514305 SERTAD4Q9NUC0 356 aa15.85■□□□□ 0.13
USP53-208ENST00000514305 ZNF257Q9Y2Q1 563 aa15.85■□□□□ 0.13
USP53-208ENST00000514305 TRAV41A0A0B4J266 112 aa15.84■□□□□ 0.13
USP53-208ENST00000514305 PSMB11A5LHX3 300 aa15.84■□□□□ 0.13
USP53-208ENST00000514305 C15orf61A6NNL5 157 aa15.84■□□□□ 0.13
USP53-208ENST00000514305 ATP6V0E1O15342 81 aa15.84■□□□□ 0.13
USP53-208ENST00000514305 IGKV1-5P01602 117 aa15.84■□□□□ 0.13
USP53-208ENST00000514305 OPN1MWP04001 364 aa15.84■□□□□ 0.13
USP53-208ENST00000514305 SULT1A3P0DMM9 295 aa15.84■□□□□ 0.13
USP53-208ENST00000514305 SULT1A4P0DMN0 295 aa15.84■□□□□ 0.13
USP53-208ENST00000514305 OPN1MW2P0DN77 364 aa15.84■□□□□ 0.13
USP53-208ENST00000514305 OPN1MW3P0DN78 364 aa15.84■□□□□ 0.13
USP53-208ENST00000514305 ZNF429Q86V71 674 aa15.84■□□□□ 0.13
USP53-208ENST00000514305 OR4X2Q8NGF9 303 aa15.84■□□□□ 0.13
USP53-208ENST00000514305 FOXA2Q9Y261 457 aaPredicted RBP15.84■□□□□ 0.13
USP53-208ENST00000514305 OR51B2Q9Y5P1 312 aa15.84■□□□□ 0.13
USP53-208ENST00000514305 PLXNB1O43157 2135 aa15.83■□□□□ 0.13
USP53-208ENST00000514305 MSGN1A6NI15 193 aa15.83■□□□□ 0.12
USP53-208ENST00000514305 SNRPGP15A8MWD9 76 aa15.83■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms