RNA–Protein interactions for RNA: ENST00000493265.2

LIME1-208, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS ALT2 TSL 2

Gene LIME1, Length 661 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-208ENST00000493265 LRTM2Q8N967 370 aa13.59□□□□□ -0.23
LIME1-208ENST00000493265 MINDY2Q8NBR6 621 aa13.59□□□□□ -0.23
LIME1-208ENST00000493265 FAM103A1Q9BTL3 118 aaKnown RBP13.59□□□□□ -0.23
LIME1-208ENST00000493265 HINT2Q9BX68 163 aa13.59□□□□□ -0.23
LIME1-208ENST00000493265 CACNG5Q9UF02 275 aa13.59□□□□□ -0.23
LIME1-208ENST00000493265 FAM25EA8MYX2 175 aa13.58□□□□□ -0.24
LIME1-208ENST00000493265 IFNA21P01568 189 aa13.58□□□□□ -0.24
LIME1-208ENST00000493265 APELAP0DMC3 54 aa13.58□□□□□ -0.24
LIME1-208ENST00000493265 VDAC1P21796 283 aa13.58□□□□□ -0.24
LIME1-208ENST00000493265 VDAC2P45880 294 aaPredicted RBP13.58□□□□□ -0.24
LIME1-208ENST00000493265 RPL15P61313 204 aaKnown RBP13.58□□□□□ -0.24
LIME1-208ENST00000493265 NDPQ00604 133 aa13.58□□□□□ -0.24
LIME1-208ENST00000493265 ZNF562Q6V9R5 426 aa13.58□□□□□ -0.24
LIME1-208ENST00000493265 Q6ZRM9 215 aa13.58□□□□□ -0.24
LIME1-208ENST00000493265 C3orf56Q8N813 242 aa13.58□□□□□ -0.24
LIME1-208ENST00000493265 OR2T6Q8NHC8 308 aa13.58□□□□□ -0.24
LIME1-208ENST00000493265 ARPC1AQ92747 370 aa13.58□□□□□ -0.24
LIME1-208ENST00000493265 LSM10Q969L4 123 aaKnown RBP13.58□□□□□ -0.24
LIME1-208ENST00000493265 FYTTD1Q96QD9 318 aaKnown RBP13.58□□□□□ -0.24
LIME1-208ENST00000493265 QTRT1Q9BXR0 403 aaKnown RBP13.58□□□□□ -0.24
LIME1-208ENST00000493265 COMMD5Q9GZQ3 224 aa13.58□□□□□ -0.24
LIME1-208ENST00000493265 OR51J1Q9H342 316 aa13.58□□□□□ -0.24
LIME1-208ENST00000493265 OR51B2Q9Y5P1 312 aa13.58□□□□□ -0.24
LIME1-208ENST00000493265 PIGBOS1A0A0B4J2F0 54 aa13.57□□□□□ -0.24
LIME1-208ENST00000493265 C13orf42A0A1B0GVH6 325 aa13.57□□□□□ -0.24
LIME1-208ENST00000493265 DUXBA0A1W2PPF3 345 aa13.57□□□□□ -0.24
LIME1-208ENST00000493265 DBX1A6NMT0 343 aa13.57□□□□□ -0.24
LIME1-208ENST00000493265 SNRPGP15A8MWD9 76 aa13.57□□□□□ -0.24
LIME1-208ENST00000493265 ATP6V0E1O15342 81 aa13.57□□□□□ -0.24
LIME1-208ENST00000493265 IL6RP08887 468 aaPredicted RBP13.57□□□□□ -0.24
LIME1-208ENST00000493265 P0C879 139 aa13.57□□□□□ -0.24
LIME1-208ENST00000493265 SSBP2P81877 361 aaPredicted RBP13.57□□□□□ -0.24
LIME1-208ENST00000493265 NMSQ5H8A3 153 aa13.57□□□□□ -0.24
LIME1-208ENST00000493265 FAM219AQ8IW50 185 aa13.57□□□□□ -0.24
LIME1-208ENST00000493265 NOL4LQ96MY1 436 aaPredicted RBP13.57□□□□□ -0.24
LIME1-208ENST00000493265 PRNDQ9UKY0 176 aa13.57□□□□□ -0.24
LIME1-208ENST00000493265 FBXO7Q9Y3I1 522 aa13.57□□□□□ -0.24
LIME1-208ENST00000493265 TMED3Q9Y3Q3 217 aa13.57□□□□□ -0.24
LIME1-208ENST00000493265 WSB1Q9Y6I7 421 aa13.57□□□□□ -0.24
LIME1-208ENST00000493265 MEGF8Q7Z7M0 2845 aa13.56□□□□□ -0.24
LIME1-208ENST00000493265 TEX50A0A1B0GTY4 177 aa13.56□□□□□ -0.24
LIME1-208ENST00000493265 MSGN1A6NI15 193 aa13.56□□□□□ -0.24
LIME1-208ENST00000493265 C15orf61A6NNL5 157 aa13.56□□□□□ -0.24
LIME1-208ENST00000493265 MPTX1A8MV57 137 aa13.56□□□□□ -0.24
LIME1-208ENST00000493265 KCNAB3O43448 404 aa13.56□□□□□ -0.24
LIME1-208ENST00000493265 TSPAN9O75954 239 aa13.56□□□□□ -0.24
LIME1-208ENST00000493265 IGHG2P01859 326 aa13.56□□□□□ -0.24
LIME1-208ENST00000493265 SULT1A3P0DMM9 295 aa13.56□□□□□ -0.24
LIME1-208ENST00000493265 SULT1A4P0DMN0 295 aa13.56□□□□□ -0.24
LIME1-208ENST00000493265 RPL27AP46776 148 aaKnown RBP13.56□□□□□ -0.24
LIME1-208ENST00000493265 COMPP49747 757 aaPredicted RBP13.56□□□□□ -0.24
LIME1-208ENST00000493265 ECSCRQ19T08 205 aa13.56□□□□□ -0.24
LIME1-208ENST00000493265 SPINK9Q5DT21 86 aa13.56□□□□□ -0.24
LIME1-208ENST00000493265 THOC7Q6I9Y2 204 aaKnown RBP13.56□□□□□ -0.24
LIME1-208ENST00000493265 FOXRED2Q8IWF2 684 aa13.56□□□□□ -0.24
LIME1-208ENST00000493265 OR1S1Q8NH92 325 aa13.56□□□□□ -0.24
LIME1-208ENST00000493265 SRSF12Q8WXF0 261 aaKnown RBP13.56□□□□□ -0.24
LIME1-208ENST00000493265 C7orf66A4D0T2 115 aa13.55□□□□□ -0.24
LIME1-208ENST00000493265 C5orf51A6NDU8 294 aa13.55□□□□□ -0.24
LIME1-208ENST00000493265 HMX3A6NHT5 357 aa13.55□□□□□ -0.24
LIME1-208ENST00000493265 GOSR2O14653 212 aa13.55□□□□□ -0.24
LIME1-208ENST00000493265 NDUFA7O95182 113 aa13.55□□□□□ -0.24
LIME1-208ENST00000493265 IFNA17P01571 189 aa13.55□□□□□ -0.24
LIME1-208ENST00000493265 MAS1LP35410 378 aa13.55□□□□□ -0.24
LIME1-208ENST00000493265 SMCO1Q147U7 214 aa13.55□□□□□ -0.24
LIME1-208ENST00000493265 C2orf68Q2NKX9 166 aa13.55□□□□□ -0.24
LIME1-208ENST00000493265 OR4F5Q8NH21 305 aa13.55□□□□□ -0.24
LIME1-208ENST00000493265 CTNNBIP1Q9NSA3 81 aaPredicted RBP13.55□□□□□ -0.24
LIME1-208ENST00000493265 FOXA2Q9Y261 457 aaPredicted RBP13.55□□□□□ -0.24
LIME1-208ENST00000493265 MGAM2Q2M2H8 2515 aa13.55□□□□□ -0.24
LIME1-208ENST00000493265 TMEM89A2RUT3 159 aa13.54□□□□□ -0.24
LIME1-208ENST00000493265 E7EUB6 86 aa13.54□□□□□ -0.24
LIME1-208ENST00000493265 G3V318 75 aa13.54□□□□□ -0.24
LIME1-208ENST00000493265 AP4M1O00189 453 aa13.54□□□□□ -0.24
LIME1-208ENST00000493265 ST8SIA3O43173 380 aa13.54□□□□□ -0.24
LIME1-208ENST00000493265 SIX6O95475 246 aa13.54□□□□□ -0.24
LIME1-208ENST00000493265 HKR1P10072 659 aa13.54□□□□□ -0.24
LIME1-208ENST00000493265 MDKP21741 143 aaPredicted RBP13.54□□□□□ -0.24
LIME1-208ENST00000493265 Q8N2B8 174 aa13.54□□□□□ -0.24
LIME1-208ENST00000493265 LFNGQ8NES3 379 aa13.54□□□□□ -0.24
LIME1-208ENST00000493265 OR1L8Q8NGR8 309 aa13.54□□□□□ -0.24
LIME1-208ENST00000493265 LINC01006Q8NI28 216 aa13.54□□□□□ -0.24
LIME1-208ENST00000493265 PDCD10Q9BUL8 212 aa13.54□□□□□ -0.24
LIME1-208ENST00000493265 TMEM14BQ9NUH8 114 aa13.54□□□□□ -0.24
LIME1-208ENST00000493265 FKBP11Q9NYL4 201 aa13.54□□□□□ -0.24
LIME1-208ENST00000493265 GSKIPQ9P0R6 139 aa13.54□□□□□ -0.24
LIME1-208ENST00000493265 A0A1B0GU03 582 aa13.53□□□□□ -0.24
LIME1-208ENST00000493265 TRAPPC2P0DI81 140 aa13.53□□□□□ -0.24
LIME1-208ENST00000493265 TRAPPC2BP0DI82 140 aa13.53□□□□□ -0.24
LIME1-208ENST00000493265 EGR2P11161 476 aaPredicted RBP13.53□□□□□ -0.24
LIME1-208ENST00000493265 IAH1Q2TAA2 248 aaPredicted RBP13.53□□□□□ -0.24
LIME1-208ENST00000493265 UNQ5815/PRO19632Q6UWF5 114 aa13.53□□□□□ -0.24
LIME1-208ENST00000493265 CADM3Q8N126 398 aa13.53□□□□□ -0.24
LIME1-208ENST00000493265 OR10W1Q8NGF6 305 aa13.53□□□□□ -0.24
LIME1-208ENST00000493265 SGMS2Q8NHU3 365 aa13.53□□□□□ -0.24
LIME1-208ENST00000493265 OR10C1Q96KK4 312 aa13.53□□□□□ -0.24
LIME1-208ENST00000493265 SPIN2AQ99865 258 aa13.53□□□□□ -0.24
LIME1-208ENST00000493265 SPIN2BQ9BPZ2 258 aa13.53□□□□□ -0.24
LIME1-208ENST00000493265 C16orf95Q9H693 158 aa13.53□□□□□ -0.24
LIME1-208ENST00000493265 SERTAD4Q9NUC0 356 aa13.53□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms