RNA–Protein interactions for RNA: ENST00000489403.1

CPSF3-204, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 5

Gene CPSF3, Length 688 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-204ENST00000489403 TRBV7-1A0A0A6YYK4 115 aa9.25□□□□□ -0.93
CPSF3-204ENST00000489403 SCGNO76038 276 aa9.25□□□□□ -0.93
CPSF3-204ENST00000489403 CLEC3BP05452 202 aa9.25□□□□□ -0.93
CPSF3-204ENST00000489403 C8orf88P0DMB2 117 aa9.25□□□□□ -0.93
CPSF3-204ENST00000489403 PTHLHP12272 177 aa9.25□□□□□ -0.93
CPSF3-204ENST00000489403 DEFA4P12838 97 aa9.25□□□□□ -0.93
CPSF3-204ENST00000489403 FGF9P31371 208 aaPredicted RBP9.25□□□□□ -0.93
CPSF3-204ENST00000489403 TM4SF20Q53R12 229 aa9.25□□□□□ -0.93
CPSF3-204ENST00000489403 IZUMO2Q6UXV1 221 aa9.25□□□□□ -0.93
CPSF3-204ENST00000489403 OR4A5Q8NH83 315 aa9.25□□□□□ -0.93
CPSF3-204ENST00000489403 LGALS14Q8TCE9 139 aa9.25□□□□□ -0.93
CPSF3-204ENST00000489403 SECTM1Q8WVN6 248 aa9.25□□□□□ -0.93
CPSF3-204ENST00000489403 CXorf58Q96LI9 332 aa9.25□□□□□ -0.93
CPSF3-204ENST00000489403 CCL28Q9NRJ3 127 aa9.25□□□□□ -0.93
CPSF3-204ENST00000489403 DAPK2Q9UIK4 370 aa9.25□□□□□ -0.93
CPSF3-204ENST00000489403 KMT2AQ03164 3969 aa9.25□□□□□ -0.93
CPSF3-204ENST00000489403 IGLC7A0M8Q6 106 aa9.24□□□□□ -0.93
CPSF3-204ENST00000489403 GPR183P32249 361 aa9.24□□□□□ -0.93
CPSF3-204ENST00000489403 OR2B8PP59922 312 aa9.24□□□□□ -0.93
CPSF3-204ENST00000489403 ARPC4P59998 168 aa9.24□□□□□ -0.93
CPSF3-204ENST00000489403 MSMO1Q15800 293 aa9.24□□□□□ -0.93
CPSF3-204ENST00000489403 ANKRD55Q3KP44 614 aa9.24□□□□□ -0.93
CPSF3-204ENST00000489403 ZNF585BQ52M93 769 aa9.24□□□□□ -0.93
CPSF3-204ENST00000489403 UBE2UQ5VVX9 321 aa9.24□□□□□ -0.93
CPSF3-204ENST00000489403 SFXN4Q6P4A7 337 aa9.24□□□□□ -0.93
CPSF3-204ENST00000489403 SPAG16Q8N0X2 631 aa9.24□□□□□ -0.93
CPSF3-204ENST00000489403 GVQW1Q8N7I0 195 aa9.24□□□□□ -0.93
CPSF3-204ENST00000489403 BEST4Q8NFU0 473 aa9.24□□□□□ -0.93
CPSF3-204ENST00000489403 OR13F1Q8NGS4 319 aa9.24□□□□□ -0.93
CPSF3-204ENST00000489403 ZNF502Q8TBZ5 544 aa9.24□□□□□ -0.93
CPSF3-204ENST00000489403 MARC2Q969Z3 335 aa9.24□□□□□ -0.93
CPSF3-204ENST00000489403 HRASLSQ9HDD0 168 aa9.24□□□□□ -0.93
CPSF3-204ENST00000489403 RHBDL2Q9NX52 303 aa9.24□□□□□ -0.93
CPSF3-204ENST00000489403 FRAS1Q86XX4 4008 aa9.23□□□□□ -0.93
CPSF3-204ENST00000489403 TRAV3A0A0B4J244 114 aa9.23□□□□□ -0.93
CPSF3-204ENST00000489403 TRAV25A0A0B4J276 109 aa9.23□□□□□ -0.93
CPSF3-204ENST00000489403 IGHV3-35A0A0C4DH35 117 aa9.23□□□□□ -0.93
CPSF3-204ENST00000489403 PPYP01298 95 aa9.23□□□□□ -0.93
CPSF3-204ENST00000489403 FCGR2CP31995 323 aa9.23□□□□□ -0.93
CPSF3-204ENST00000489403 HSPA13P48723 471 aa9.23□□□□□ -0.93
CPSF3-204ENST00000489403 TAS2R31P59538 309 aa9.23□□□□□ -0.93
CPSF3-204ENST00000489403 GABARAPL2P60520 117 aa9.23□□□□□ -0.93
CPSF3-204ENST00000489403 EWSR1Q01844 656 aaKnown RBP eCLIP9.23□□□□□ -0.93
CPSF3-204ENST00000489403 PMS2P11Q13670 270 aa9.23□□□□□ -0.93
CPSF3-204ENST00000489403 ZNF773Q6PK81 442 aa9.23□□□□□ -0.93
CPSF3-204ENST00000489403 RBPMS2Q6ZRY4 209 aaKnown RBP9.23□□□□□ -0.93
CPSF3-204ENST00000489403 TPRA1Q86W33 373 aa9.23□□□□□ -0.93
CPSF3-204ENST00000489403 WFDC3Q8IUB2 231 aa9.23□□□□□ -0.93
CPSF3-204ENST00000489403 OR1L6Q8NGR2 347 aa9.23□□□□□ -0.93
CPSF3-204ENST00000489403 ZNF436Q9C0F3 470 aaPredicted RBP9.23□□□□□ -0.93
CPSF3-204ENST00000489403 VCX3BQ9H321 246 aa9.23□□□□□ -0.93
CPSF3-204ENST00000489403 MRPL27Q9P0M9 148 aaKnown RBP9.23□□□□□ -0.93
CPSF3-204ENST00000489403 RRP15Q9Y3B9 282 aaKnown RBP9.23□□□□□ -0.93
CPSF3-204ENST00000489403 A0A0J9YWU9 116 aa9.22□□□□□ -0.93
CPSF3-204ENST00000489403 SULT1C2O00338 296 aa9.22□□□□□ -0.93
CPSF3-204ENST00000489403 UPK2O00526 184 aa9.22□□□□□ -0.93
CPSF3-204ENST00000489403 RBFOX2O43251 390 aaKnown RBP eCLIP9.22□□□□□ -0.93
CPSF3-204ENST00000489403 LY6G6CO95867 125 aa9.22□□□□□ -0.93
CPSF3-204ENST00000489403 HPRT1P00492 218 aa9.22□□□□□ -0.93
CPSF3-204ENST00000489403 NQO2P16083 231 aa9.22□□□□□ -0.93
CPSF3-204ENST00000489403 PSMB9P28065 219 aa9.22□□□□□ -0.93
CPSF3-204ENST00000489403 ELLP55199 621 aaPredicted RBP9.22□□□□□ -0.93
CPSF3-204ENST00000489403 POU2AF1Q16633 256 aa9.22□□□□□ -0.93
CPSF3-204ENST00000489403 PLET1Q6UQ28 207 aa9.22□□□□□ -0.93
CPSF3-204ENST00000489403 HOGA1Q86XE5 327 aa9.22□□□□□ -0.93
CPSF3-204ENST00000489403 OR2C3Q8N628 320 aa9.22□□□□□ -0.93
CPSF3-204ENST00000489403 ZBTB34Q8NCN2 500 aa9.22□□□□□ -0.93
CPSF3-204ENST00000489403 SLC25A38Q96DW6 304 aa9.22□□□□□ -0.93
CPSF3-204ENST00000489403 SRSF8Q9BRL6 282 aaKnown RBP9.22□□□□□ -0.93
CPSF3-204ENST00000489403 AIFM2Q9BRQ8 373 aa9.22□□□□□ -0.93
CPSF3-204ENST00000489403 UBQLN2Q9UHD9 624 aa9.22□□□□□ -0.93
CPSF3-204ENST00000489403 UFC1Q9Y3C8 167 aa9.22□□□□□ -0.93
CPSF3-204ENST00000489403 CXorf65A6NEN9 183 aa9.21□□□□□ -0.94
CPSF3-204ENST00000489403 NUPR2A6NF83 97 aa9.21□□□□□ -0.94
CPSF3-204ENST00000489403 TGOLN2O43493 480 aa9.21□□□□□ -0.94
CPSF3-204ENST00000489403 MRPS14O60783 128 aaKnown RBP9.21□□□□□ -0.94
CPSF3-204ENST00000489403 S1PR2O95136 353 aa9.21□□□□□ -0.94
CPSF3-204ENST00000489403 FCER2P06734 321 aa9.21□□□□□ -0.94
CPSF3-204ENST00000489403 CLEC2LP0C7M8 214 aa9.21□□□□□ -0.94
CPSF3-204ENST00000489403 PTBP1P26599 531 aaKnown RBP eCLIP9.21□□□□□ -0.94
CPSF3-204ENST00000489403 SDC2P34741 201 aa9.21□□□□□ -0.94
CPSF3-204ENST00000489403 FXYD4P59646 89 aa9.21□□□□□ -0.94
CPSF3-204ENST00000489403 TNFRSF9Q07011 255 aa9.21□□□□□ -0.94
CPSF3-204ENST00000489403 CATR1Q13166 79 aa9.21□□□□□ -0.94
CPSF3-204ENST00000489403 ZNF818PQ6ZRF7 136 aa9.21□□□□□ -0.94
CPSF3-204ENST00000489403 LYG2Q86SG7 212 aa9.21□□□□□ -0.94
CPSF3-204ENST00000489403 SPARTQ8N0X7 666 aa9.21□□□□□ -0.94
CPSF3-204ENST00000489403 OR10W1Q8NGF6 305 aa9.21□□□□□ -0.94
CPSF3-204ENST00000489403 OR5H6Q8NGV6 325 aa9.21□□□□□ -0.94
CPSF3-204ENST00000489403 OR51H1Q8NH63 302 aa9.21□□□□□ -0.94
CPSF3-204ENST00000489403 TMEM190Q8WZ59 177 aa9.21□□□□□ -0.94
CPSF3-204ENST00000489403 SPAG8Q99932 426 aaPredicted RBP9.21□□□□□ -0.94
CPSF3-204ENST00000489403 SLC5A7Q9GZV3 580 aa9.21□□□□□ -0.94
CPSF3-204ENST00000489403 C5orf66Q9H5L9 145 aa9.21□□□□□ -0.94
CPSF3-204ENST00000489403 TMEM140Q9NV12 185 aa9.21□□□□□ -0.94
CPSF3-204ENST00000489403 THYN1Q9P016 225 aa9.21□□□□□ -0.94
CPSF3-204ENST00000489403 SSR3Q9UNL2 185 aa9.21□□□□□ -0.94
CPSF3-204ENST00000489403 TP53TG1Q9Y2A0 90 aa9.21□□□□□ -0.94
CPSF3-204ENST00000489403 TRAV18A0A075B6X5 111 aa9.2□□□□□ -0.94
CPSF3-204ENST00000489403 TSPAN4O14817 238 aa9.2□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 40.4 ms