RNA–Protein interactions for RNA: ENST00000483876.1

COL17A1-206, Transcript of collagen type XVII alpha 1 chain, humanhuman

TSL 5

Gene COL17A1, Length 622 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-206ENST00000483876 STRAPQ9Y3F4 350 aaKnown RBP4.4□□□□□ -1.71
COL17A1-206ENST00000483876 ARID1AO14497 2285 aa4.39□□□□□ -1.71
COL17A1-206ENST00000483876 LOC105371242A0A075B767 164 aa4.39□□□□□ -1.71
COL17A1-206ENST00000483876 A0A1W2PPE3 182 aa4.39□□□□□ -1.71
COL17A1-206ENST00000483876 MEX3AA1L020 520 aaKnown RBP4.39□□□□□ -1.71
COL17A1-206ENST00000483876 LYNX1G3V0Z9 82 aa4.39□□□□□ -1.71
COL17A1-206ENST00000483876 LY6LH3BQJ8 138 aa4.39□□□□□ -1.71
COL17A1-206ENST00000483876 UPK2O00526 184 aa4.39□□□□□ -1.71
COL17A1-206ENST00000483876 PPIHO43447 177 aaKnown RBP4.39□□□□□ -1.71
COL17A1-206ENST00000483876 KBTBD11O94819 623 aa4.39□□□□□ -1.71
COL17A1-206ENST00000483876 APOA2P02652 100 aa4.39□□□□□ -1.71
COL17A1-206ENST00000483876 LYNX1P0DP58 116 aa4.39□□□□□ -1.71
COL17A1-206ENST00000483876 PAX1P15863 534 aa4.39□□□□□ -1.71
COL17A1-206ENST00000483876 PRTN3P24158 256 aa4.39□□□□□ -1.71
COL17A1-206ENST00000483876 VDAC2P45880 294 aaPredicted RBP4.39□□□□□ -1.71
COL17A1-206ENST00000483876 GPR6P46095 362 aaPredicted RBP4.39□□□□□ -1.71
COL17A1-206ENST00000483876 RAB13P51153 203 aa4.39□□□□□ -1.71
COL17A1-206ENST00000483876 DYNLT3P51808 116 aa4.39□□□□□ -1.71
COL17A1-206ENST00000483876 F2RL1P55085 397 aa4.39□□□□□ -1.71
COL17A1-206ENST00000483876 LINC00205P59089 165 aa4.39□□□□□ -1.71
COL17A1-206ENST00000483876 ERVFRD-1P60508 538 aa4.39□□□□□ -1.71
COL17A1-206ENST00000483876 AANATQ16613 207 aa4.39□□□□□ -1.71
COL17A1-206ENST00000483876 IZUMO4Q1ZYL8 232 aa4.39□□□□□ -1.71
COL17A1-206ENST00000483876 VWC2Q2TAL6 325 aa4.39□□□□□ -1.71
COL17A1-206ENST00000483876 LRRC75BQ2VPJ9 315 aa4.39□□□□□ -1.71
COL17A1-206ENST00000483876 UTF1Q5T230 341 aa4.39□□□□□ -1.71
COL17A1-206ENST00000483876 IL34Q6ZMJ4 242 aa4.39□□□□□ -1.71
COL17A1-206ENST00000483876 KIR3DL3Q8N743 410 aa4.39□□□□□ -1.71
COL17A1-206ENST00000483876 OR11H6Q8NGC7 330 aa4.39□□□□□ -1.71
COL17A1-206ENST00000483876 OR10P1Q8NGE3 313 aa4.39□□□□□ -1.71
COL17A1-206ENST00000483876 OR13D1Q8NGV5 346 aa4.39□□□□□ -1.71
COL17A1-206ENST00000483876 OR10X1Q8NGY0 326 aa4.39□□□□□ -1.71
COL17A1-206ENST00000483876 OR5B3Q8NH48 314 aa4.39□□□□□ -1.71
COL17A1-206ENST00000483876 LEAP2Q969E1 77 aa4.39□□□□□ -1.71
COL17A1-206ENST00000483876 FLYWCH2Q96CP2 140 aaKnown RBP4.39□□□□□ -1.71
COL17A1-206ENST00000483876 BSCL2Q96G97 398 aaPredicted RBP4.39□□□□□ -1.71
COL17A1-206ENST00000483876 CITED4Q96RK1 184 aa4.39□□□□□ -1.71
COL17A1-206ENST00000483876 CLCC1Q96S66 551 aa4.39□□□□□ -1.71
COL17A1-206ENST00000483876 NABP2Q9BQ15 211 aa4.39□□□□□ -1.71
COL17A1-206ENST00000483876 PSMG3Q9BT73 122 aaPredicted RBP4.39□□□□□ -1.71
COL17A1-206ENST00000483876 SMDT1Q9H4I9 107 aa4.39□□□□□ -1.71
COL17A1-206ENST00000483876 SLC35D1Q9NTN3 355 aa4.39□□□□□ -1.71
COL17A1-206ENST00000483876 TMEM140Q9NV12 185 aa4.39□□□□□ -1.71
COL17A1-206ENST00000483876 POLR3KQ9Y2Y1 108 aaPredicted RBP4.39□□□□□ -1.71
COL17A1-206ENST00000483876 AMMECR1Q9Y4X0 333 aaPredicted RBP4.39□□□□□ -1.71
COL17A1-206ENST00000483876 TIMM9Q9Y5J7 89 aa4.39□□□□□ -1.71
COL17A1-206ENST00000483876 PCLOQ9Y6V0 5065 aa4.39□□□□□ -1.71
COL17A1-206ENST00000483876 IGHV2-26A0A0B4J1V2 119 aa4.38□□□□□ -1.71
COL17A1-206ENST00000483876 TRAV1-1A0A0B4J248 108 aa4.38□□□□□ -1.71
COL17A1-206ENST00000483876 A0A1B0GW64 132 aa4.38□□□□□ -1.71
COL17A1-206ENST00000483876 BTBD17A6NE02 478 aa4.38□□□□□ -1.71
COL17A1-206ENST00000483876 C15orf61A6NNL5 157 aa4.38□□□□□ -1.71
COL17A1-206ENST00000483876 SRRM4A7MD48 611 aaKnown RBP4.38□□□□□ -1.71
COL17A1-206ENST00000483876 PMS2P5A8MQ11 134 aa4.38□□□□□ -1.71
COL17A1-206ENST00000483876 CEBPZOSA8MTT3 80 aa4.38□□□□□ -1.71
COL17A1-206ENST00000483876 ZNF705EA8MWA4 302 aaPredicted RBP4.38□□□□□ -1.71
COL17A1-206ENST00000483876 OOSP1A8MZH6 123 aa4.38□□□□□ -1.71
COL17A1-206ENST00000483876 FNDC10F2Z333 226 aa4.38□□□□□ -1.71
COL17A1-206ENST00000483876 H0YJW9 148 aa4.38□□□□□ -1.71
COL17A1-206ENST00000483876 BUB1B-PAK6H3BSN5 160 aa4.38□□□□□ -1.71
COL17A1-206ENST00000483876 NDUFS8O00217 210 aa4.38□□□□□ -1.71
COL17A1-206ENST00000483876 SHOXO15266 292 aa4.38□□□□□ -1.71
COL17A1-206ENST00000483876 MPDU1O75352 247 aa4.38□□□□□ -1.71
COL17A1-206ENST00000483876 RBMXL2O75526 392 aaKnown RBP4.38□□□□□ -1.71
COL17A1-206ENST00000483876 CST7O76096 145 aa4.38□□□□□ -1.71
COL17A1-206ENST00000483876 CRYZL1O95825 349 aa4.38□□□□□ -1.71
COL17A1-206ENST00000483876 IFNA17P01571 189 aa4.38□□□□□ -1.71
COL17A1-206ENST00000483876 IGHV3-7P01780 117 aa4.38□□□□□ -1.71
COL17A1-206ENST00000483876 OR9G9P0C7N8 305 aa4.38□□□□□ -1.71
COL17A1-206ENST00000483876 SRD5A1P18405 259 aa4.38□□□□□ -1.71
COL17A1-206ENST00000483876 MDKP21741 143 aaPredicted RBP4.38□□□□□ -1.71
COL17A1-206ENST00000483876 USF1P22415 310 aaPredicted RBP4.38□□□□□ -1.71
COL17A1-206ENST00000483876 ATP6V0CP27449 155 aa4.38□□□□□ -1.71
COL17A1-206ENST00000483876 GNG10P50151 68 aa4.38□□□□□ -1.71
COL17A1-206ENST00000483876 PJVKQ0ZLH3 352 aa4.38□□□□□ -1.71
COL17A1-206ENST00000483876 PMS2P11Q13670 270 aa4.38□□□□□ -1.71
COL17A1-206ENST00000483876 HLA-DRB5Q30154 266 aa4.38□□□□□ -1.71
COL17A1-206ENST00000483876 OR2B11Q5JQS5 317 aa4.38□□□□□ -1.71
COL17A1-206ENST00000483876 SPANXN5Q5MJ07 72 aa4.38□□□□□ -1.71
COL17A1-206ENST00000483876 FAM74A1Q5RGS3 127 aa4.38□□□□□ -1.71
COL17A1-206ENST00000483876 AVPI1Q5T686 147 aa4.38□□□□□ -1.71
COL17A1-206ENST00000483876 OR4A47Q6IF82 309 aa4.38□□□□□ -1.71
COL17A1-206ENST00000483876 BTNL8Q6UX41 500 aa4.38□□□□□ -1.71
COL17A1-206ENST00000483876 TGIF2LXQ8IUE1 241 aa4.38□□□□□ -1.71
COL17A1-206ENST00000483876 ZNF525Q8N782 197 aa4.38□□□□□ -1.71
COL17A1-206ENST00000483876 TEX45Q8NA69 505 aa4.38□□□□□ -1.71
COL17A1-206ENST00000483876 LFNGQ8NES3 379 aa4.38□□□□□ -1.71
COL17A1-206ENST00000483876 OR2G3Q8NGZ4 309 aa4.38□□□□□ -1.71
COL17A1-206ENST00000483876 TMEM167AQ8TBQ9 72 aa4.38□□□□□ -1.71
COL17A1-206ENST00000483876 SCGB1C1Q8TD33 95 aa4.38□□□□□ -1.71
COL17A1-206ENST00000483876 CXorf58Q96LI9 332 aa4.38□□□□□ -1.71
COL17A1-206ENST00000483876 CCL19Q99731 98 aa4.38□□□□□ -1.71
COL17A1-206ENST00000483876 SSBP3Q9BWW4 388 aaPredicted RBP4.38□□□□□ -1.71
COL17A1-206ENST00000483876 CLEC7AQ9BXN2 247 aa4.38□□□□□ -1.71
COL17A1-206ENST00000483876 QTRT1Q9BXR0 403 aaKnown RBP4.38□□□□□ -1.71
COL17A1-206ENST00000483876 SMIM3Q9BZL3 60 aa4.38□□□□□ -1.71
COL17A1-206ENST00000483876 UBTD1Q9HAC8 227 aa4.38□□□□□ -1.71
COL17A1-206ENST00000483876 MMP26Q9NRE1 261 aa4.38□□□□□ -1.71
COL17A1-206ENST00000483876 PLA2G2EQ9NZK7 142 aa4.38□□□□□ -1.71
COL17A1-206ENST00000483876 WASHC3Q9Y3C0 194 aa4.38□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 36.4 ms