RNA–Protein interactions for RNA: ENST00000465132.1

CPSF4-209, Transcript of cleavage and polyadenylation specific factor 4, humanhuman

TSL 2

Gene CPSF4, Length 927 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4-209ENST00000465132 PRSS8Q16651 343 aa13.77□□□□□ -0.21
CPSF4-209ENST00000465132 THOC7Q6I9Y2 204 aaKnown RBP13.77□□□□□ -0.21
CPSF4-209ENST00000465132 SSX9Q7RTT3 188 aa13.77□□□□□ -0.21
CPSF4-209ENST00000465132 LRTM2Q8N967 370 aa13.77□□□□□ -0.21
CPSF4-209ENST00000465132 OR4A16Q8NH70 328 aa13.77□□□□□ -0.21
CPSF4-209ENST00000465132 LSM10Q969L4 123 aaKnown RBP13.77□□□□□ -0.21
CPSF4-209ENST00000465132 SEC22AQ96IW7 307 aa13.77□□□□□ -0.21
CPSF4-209ENST00000465132 TMEM68Q96MH6 324 aa13.77□□□□□ -0.21
CPSF4-209ENST00000465132 MARVELD1Q9BSK0 173 aa13.77□□□□□ -0.21
CPSF4-209ENST00000465132 PDCD10Q9BUL8 212 aa13.77□□□□□ -0.21
CPSF4-209ENST00000465132 COMMD5Q9GZQ3 224 aa13.77□□□□□ -0.21
CPSF4-209ENST00000465132 SHPKQ9UHJ6 478 aa13.77□□□□□ -0.21
CPSF4-209ENST00000465132 ZNF580Q9UK33 172 aa13.77□□□□□ -0.21
CPSF4-209ENST00000465132 PLXNB1O43157 2135 aa13.76□□□□□ -0.21
CPSF4-209ENST00000465132 FBXO24O75426 580 aa13.76□□□□□ -0.21
CPSF4-209ENST00000465132 RBMXL2O75526 392 aaKnown RBP13.76□□□□□ -0.21
CPSF4-209ENST00000465132 CRYGBP07316 175 aa13.76□□□□□ -0.21
CPSF4-209ENST00000465132 ANXA7P20073 488 aaKnown RBP13.76□□□□□ -0.21
CPSF4-209ENST00000465132 G6PCP35575 357 aa13.76□□□□□ -0.21
CPSF4-209ENST00000465132 BLCAPP62952 87 aa13.76□□□□□ -0.21
CPSF4-209ENST00000465132 SUPT4H1P63272 117 aaKnown RBP13.76□□□□□ -0.21
CPSF4-209ENST00000465132 SLC35B1P78383 322 aa13.76□□□□□ -0.21
CPSF4-209ENST00000465132 DHRS2Q13268 280 aa13.76□□□□□ -0.21
CPSF4-209ENST00000465132 NSUN5P1Q3KNT7 163 aa13.76□□□□□ -0.21
CPSF4-209ENST00000465132 ABHD5Q8WTS1 349 aa13.76□□□□□ -0.21
CPSF4-209ENST00000465132 CASTOR1Q8WTX7 329 aa13.76□□□□□ -0.21
CPSF4-209ENST00000465132 CHPT1Q8WUD6 406 aa13.76□□□□□ -0.21
CPSF4-209ENST00000465132 SPIN2AQ99865 258 aa13.76□□□□□ -0.21
CPSF4-209ENST00000465132 SPIN2BQ9BPZ2 258 aa13.76□□□□□ -0.21
CPSF4-209ENST00000465132 OR51J1Q9H342 316 aa13.76□□□□□ -0.21
CPSF4-209ENST00000465132 SERTAD4Q9NUC0 356 aa13.76□□□□□ -0.21
CPSF4-209ENST00000465132 TMED3Q9Y3Q3 217 aa13.76□□□□□ -0.21
CPSF4-209ENST00000465132 UPK2O00526 184 aa13.75□□□□□ -0.21
CPSF4-209ENST00000465132 CA2P00918 260 aa13.75□□□□□ -0.21
CPSF4-209ENST00000465132 AMY1AP04745 511 aa13.75□□□□□ -0.21
CPSF4-209ENST00000465132 CD28P10747 220 aa13.75□□□□□ -0.21
CPSF4-209ENST00000465132 HLA-GP17693 338 aa13.75□□□□□ -0.21
CPSF4-209ENST00000465132 GNB1P62873 340 aa13.75□□□□□ -0.21
CPSF4-209ENST00000465132 TNXAQ16473 311 aa13.75□□□□□ -0.21
CPSF4-209ENST00000465132 OXLD1Q5BKU9 147 aa13.75□□□□□ -0.21
CPSF4-209ENST00000465132 HSD17B13Q7Z5P4 300 aaPredicted RBP13.75□□□□□ -0.21
CPSF4-209ENST00000465132 SELENOHQ8IZQ5 122 aaKnown RBP13.75□□□□□ -0.21
CPSF4-209ENST00000465132 VKORC1L1Q8N0U8 176 aa13.75□□□□□ -0.21
CPSF4-209ENST00000465132 ZNF431Q8TF32 576 aaPredicted RBP13.75□□□□□ -0.21
CPSF4-209ENST00000465132 ARPC1AQ92747 370 aa13.75□□□□□ -0.21
CPSF4-209ENST00000465132 CLCC1Q96S66 551 aa13.75□□□□□ -0.21
CPSF4-209ENST00000465132 SNRPGP15A8MWD9 76 aa13.74□□□□□ -0.21
CPSF4-209ENST00000465132 IGF1P05019 195 aa13.74□□□□□ -0.21
CPSF4-209ENST00000465132 CX3CL1P78423 397 aa13.74□□□□□ -0.21
CPSF4-209ENST00000465132 FXYD3Q14802 87 aa13.74□□□□□ -0.21
CPSF4-209ENST00000465132 OR5B3Q8NH48 314 aa13.74□□□□□ -0.21
CPSF4-209ENST00000465132 WIPF2Q8TF74 440 aaPredicted RBP13.74□□□□□ -0.21
CPSF4-209ENST00000465132 MITD1Q8WV92 249 aa13.74□□□□□ -0.21
CPSF4-209ENST00000465132 ZNF430Q9H8G1 570 aaPredicted RBP13.74□□□□□ -0.21
CPSF4-209ENST00000465132 ZNF257Q9Y2Q1 563 aa13.74□□□□□ -0.21
CPSF4-209ENST00000465132 IGHV7-81A0A0B4J1V7 117 aa13.73□□□□□ -0.21
CPSF4-209ENST00000465132 ZNF429Q86V71 674 aa13.73□□□□□ -0.21
CPSF4-209ENST00000465132 NDUFA11Q86Y39 141 aa13.73□□□□□ -0.21
CPSF4-209ENST00000465132 COMMD1Q8N668 190 aa13.73□□□□□ -0.21
CPSF4-209ENST00000465132 SLC35G3Q8N808 338 aa13.73□□□□□ -0.21
CPSF4-209ENST00000465132 MRAPQ8TCY5 172 aa13.73□□□□□ -0.21
CPSF4-209ENST00000465132 SRSF8Q9BRL6 282 aaKnown RBP13.73□□□□□ -0.21
CPSF4-209ENST00000465132 PARP11Q9NR21 331 aa13.73□□□□□ -0.21
CPSF4-209ENST00000465132 CTNNBIP1Q9NSA3 81 aaPredicted RBP13.73□□□□□ -0.21
CPSF4-209ENST00000465132 COA4Q9NYJ1 87 aa13.73□□□□□ -0.21
CPSF4-209ENST00000465132 A0A1B0GU03 582 aa13.72□□□□□ -0.21
CPSF4-209ENST00000465132 ADARB2-AS1A8MUL3 147 aa13.72□□□□□ -0.21
CPSF4-209ENST00000465132 CYB5BO43169 146 aa13.72□□□□□ -0.21
CPSF4-209ENST00000465132 IGKV1-39P01597 117 aa13.72□□□□□ -0.21
CPSF4-209ENST00000465132 IGKV1D-39P04432 117 aa13.72□□□□□ -0.21
CPSF4-209ENST00000465132 IL6RP08887 468 aaPredicted RBP13.72□□□□□ -0.21
CPSF4-209ENST00000465132 SULT1A3P0DMM9 295 aa13.72□□□□□ -0.21
CPSF4-209ENST00000465132 SULT1A4P0DMN0 295 aa13.72□□□□□ -0.21
CPSF4-209ENST00000465132 SLC25A6P12236 298 aa13.72□□□□□ -0.21
CPSF4-209ENST00000465132 RPL27AP46776 148 aaKnown RBP13.72□□□□□ -0.21
CPSF4-209ENST00000465132 AKIRIN2Q53H80 203 aa13.72□□□□□ -0.21
CPSF4-209ENST00000465132 CENPVQ7Z7K6 275 aaPredicted RBP13.72□□□□□ -0.21
CPSF4-209ENST00000465132 C12orf45Q8N5I9 185 aaPredicted RBP13.72□□□□□ -0.21
CPSF4-209ENST00000465132 OR4F17Q8NGA8 305 aa13.72□□□□□ -0.21
CPSF4-209ENST00000465132 OR1L8Q8NGR8 309 aa13.72□□□□□ -0.21
CPSF4-209ENST00000465132 OR4F4Q96R69 305 aa13.72□□□□□ -0.21
CPSF4-209ENST00000465132 CITED2Q99967 270 aaPredicted RBP13.72□□□□□ -0.21
CPSF4-209ENST00000465132 WNT10AQ9GZT5 417 aa13.72□□□□□ -0.21
CPSF4-209ENST00000465132 NOTCH3Q9UM47 2321 aa13.72□□□□□ -0.21
CPSF4-209ENST00000465132 C15orf61A6NNL5 157 aa13.71□□□□□ -0.21
CPSF4-209ENST00000465132 CRIP2P52943 208 aaPredicted RBP13.71□□□□□ -0.21
CPSF4-209ENST00000465132 ANKRD55Q3KP44 614 aa13.71□□□□□ -0.21
CPSF4-209ENST00000465132 SRSF12Q8WXF0 261 aaKnown RBP13.71□□□□□ -0.21
CPSF4-209ENST00000465132 FOXA2Q9Y261 457 aaPredicted RBP13.71□□□□□ -0.21
CPSF4-209ENST00000465132 OR51B2Q9Y5P1 312 aa13.71□□□□□ -0.21
CPSF4-209ENST00000465132 TRAV41A0A0B4J266 112 aa13.7□□□□□ -0.22
CPSF4-209ENST00000465132 A0A1W2PN81 502 aa13.7□□□□□ -0.22
CPSF4-209ENST00000465132 FCN1O00602 326 aa13.7□□□□□ -0.22
CPSF4-209ENST00000465132 LY86O95711 162 aa13.7□□□□□ -0.22
CPSF4-209ENST00000465132 IGKV1-5P01602 117 aa13.7□□□□□ -0.22
CPSF4-209ENST00000465132 TRAPPC2P0DI81 140 aa13.7□□□□□ -0.22
CPSF4-209ENST00000465132 TRAPPC2BP0DI82 140 aa13.7□□□□□ -0.22
CPSF4-209ENST00000465132 CHRNA7P36544 502 aa13.7□□□□□ -0.22
CPSF4-209ENST00000465132 SMCO1Q147U7 214 aa13.7□□□□□ -0.22
CPSF4-209ENST00000465132 STPG2Q8N412 459 aa13.7□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms