RNA–Protein interactions for RNA: ENST00000461553.1

USP4-206, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 4

Gene USP4, Length 544 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-206ENST00000461553 COMMD5Q9GZQ3 224 aa10.6□□□□□ -0.71
USP4-206ENST00000461553 PLEKHA2Q9HB19 425 aa10.6□□□□□ -0.71
USP4-206ENST00000461553 TMEM140Q9NV12 185 aa10.6□□□□□ -0.71
USP4-206ENST00000461553 ANAPC10Q9UM13 185 aa10.6□□□□□ -0.71
USP4-206ENST00000461553 S1PR2O95136 353 aa10.59□□□□□ -0.71
USP4-206ENST00000461553 PMP2P02689 132 aa10.59□□□□□ -0.71
USP4-206ENST00000461553 RLN1P04808 185 aa10.59□□□□□ -0.71
USP4-206ENST00000461553 REG1AP05451 166 aa10.59□□□□□ -0.71
USP4-206ENST00000461553 MYOD1P15172 320 aa10.59□□□□□ -0.71
USP4-206ENST00000461553 LAX1Q8IWV1 398 aa10.59□□□□□ -0.71
USP4-206ENST00000461553 CMTM1Q8IZ96 169 aa10.59□□□□□ -0.71
USP4-206ENST00000461553 MUC7Q8TAX7 377 aa10.59□□□□□ -0.71
USP4-206ENST00000461553 CCDC140Q96MF4 163 aa10.59□□□□□ -0.71
USP4-206ENST00000461553 FANCD2OSQ96PS1 177 aa10.59□□□□□ -0.71
USP4-206ENST00000461553 THAP7Q9BT49 309 aaPredicted RBP10.59□□□□□ -0.71
USP4-206ENST00000461553 FXYD6Q9H0Q3 95 aa10.59□□□□□ -0.71
USP4-206ENST00000461553 TUBA4BQ9H853 241 aa10.59□□□□□ -0.71
USP4-206ENST00000461553 C19orf73Q9NVV2 129 aa10.59□□□□□ -0.71
USP4-206ENST00000461553 STARD9Q9P2P6 4700 aa10.59□□□□□ -0.71
USP4-206ENST00000461553 IZUMO1RA6ND01 250 aa10.58□□□□□ -0.72
USP4-206ENST00000461553 UPK2O00526 184 aa10.58□□□□□ -0.72
USP4-206ENST00000461553 CYB5BO43169 146 aa10.58□□□□□ -0.72
USP4-206ENST00000461553 NDUFB8O95169 186 aa10.58□□□□□ -0.72
USP4-206ENST00000461553 HLA-AP01891 365 aaKnown RBP10.58□□□□□ -0.72
USP4-206ENST00000461553 EIF4EP06730 217 aaKnown RBP10.58□□□□□ -0.72
USP4-206ENST00000461553 FGF2P09038 288 aa10.58□□□□□ -0.72
USP4-206ENST00000461553 PRSS3P35030 304 aa10.58□□□□□ -0.72
USP4-206ENST00000461553 RFX2P48378 723 aa10.58□□□□□ -0.72
USP4-206ENST00000461553 OR2B8PP59922 312 aa10.58□□□□□ -0.72
USP4-206ENST00000461553 NCS1P62166 190 aa10.58□□□□□ -0.72
USP4-206ENST00000461553 CD300EQ496F6 205 aaPredicted RBP10.58□□□□□ -0.72
USP4-206ENST00000461553 THOC7Q6I9Y2 204 aaKnown RBP10.58□□□□□ -0.72
USP4-206ENST00000461553 CLEC19AQ6UXS0 136 aa10.58□□□□□ -0.72
USP4-206ENST00000461553 CXorf58Q96LI9 332 aa10.58□□□□□ -0.72
USP4-206ENST00000461553 SPATA25Q9BR10 227 aa10.58□□□□□ -0.72
USP4-206ENST00000461553 SRSF8Q9BRL6 282 aaKnown RBP10.58□□□□□ -0.72
USP4-206ENST00000461553 QTRT1Q9BXR0 403 aaKnown RBP10.58□□□□□ -0.72
USP4-206ENST00000461553 S4R3C0 116 aa10.58□□□□□ -0.72
USP4-206ENST00000461553 SACSQ9NZJ4 4579 aa10.57□□□□□ -0.72
USP4-206ENST00000461553 IGLV11-55A0A075B6I3 123 aa10.57□□□□□ -0.72
USP4-206ENST00000461553 SMIM31A0A1B0GVY4 71 aa10.57□□□□□ -0.72
USP4-206ENST00000461553 C2orf70A6NJV1 201 aa10.57□□□□□ -0.72
USP4-206ENST00000461553 MARCH11A6NNE9 402 aa10.57□□□□□ -0.72
USP4-206ENST00000461553 LGALS9O00182 355 aa10.57□□□□□ -0.72
USP4-206ENST00000461553 NAT1P18440 290 aa10.57□□□□□ -0.72
USP4-206ENST00000461553 F2RP25116 425 aa10.57□□□□□ -0.72
USP4-206ENST00000461553 S100GP29377 79 aa10.57□□□□□ -0.72
USP4-206ENST00000461553 GNRHRP30968 328 aa10.57□□□□□ -0.72
USP4-206ENST00000461553 HRH1P35367 487 aa10.57□□□□□ -0.72
USP4-206ENST00000461553 CD81P60033 236 aa10.57□□□□□ -0.72
USP4-206ENST00000461553 DHRS11Q6UWP2 260 aa10.57□□□□□ -0.72
USP4-206ENST00000461553 FUNDC2Q9BWH2 189 aa10.57□□□□□ -0.72
USP4-206ENST00000461553 SLC2A8Q9NY64 477 aa10.57□□□□□ -0.72
USP4-206ENST00000461553 THYN1Q9P016 225 aa10.57□□□□□ -0.72
USP4-206ENST00000461553 COMMD3Q9UBI1 195 aa10.57□□□□□ -0.72
USP4-206ENST00000461553 TRBV7-1A0A0A6YYK4 115 aa10.56□□□□□ -0.72
USP4-206ENST00000461553 TRAV3A0A0B4J244 114 aa10.56□□□□□ -0.72
USP4-206ENST00000461553 IGLC7A0M8Q6 106 aa10.56□□□□□ -0.72
USP4-206ENST00000461553 MFSD2BA6NFX1 497 aa10.56□□□□□ -0.72
USP4-206ENST00000461553 CGB1A6NKQ9 187 aa10.56□□□□□ -0.72
USP4-206ENST00000461553 A8MWP6 167 aa10.56□□□□□ -0.72
USP4-206ENST00000461553 GPR31O00270 319 aa10.56□□□□□ -0.72
USP4-206ENST00000461553 TPPPO94811 219 aa10.56□□□□□ -0.72
USP4-206ENST00000461553 OR2C1O95371 312 aa10.56□□□□□ -0.72
USP4-206ENST00000461553 APOA1P02647 267 aa10.56□□□□□ -0.72
USP4-206ENST00000461553 FOLR2P14207 255 aa10.56□□□□□ -0.72
USP4-206ENST00000461553 RPA2P15927 270 aa10.56□□□□□ -0.72
USP4-206ENST00000461553 VBP1P61758 197 aa10.56□□□□□ -0.72
USP4-206ENST00000461553 KLK9Q2XQG4 91 aa10.56□□□□□ -0.72
USP4-206ENST00000461553 FAM106AQ4KMX7 169 aa10.56□□□□□ -0.72
USP4-206ENST00000461553 HSD17B13Q7Z5P4 300 aaPredicted RBP10.56□□□□□ -0.72
USP4-206ENST00000461553 GPHB5Q86YW7 130 aa10.56□□□□□ -0.72
USP4-206ENST00000461553 OR6F1Q8NGZ6 308 aa10.56□□□□□ -0.72
USP4-206ENST00000461553 ISOC1Q96CN7 298 aa10.56□□□□□ -0.72
USP4-206ENST00000461553 CMTM3Q96MX0 182 aa10.56□□□□□ -0.72
USP4-206ENST00000461553 CITED4Q96RK1 184 aa10.56□□□□□ -0.72
USP4-206ENST00000461553 PLEKHA3Q9HB20 300 aa10.56□□□□□ -0.72
USP4-206ENST00000461553 SCPEP1Q9HB40 452 aa10.56□□□□□ -0.72
USP4-206ENST00000461553 PALMDQ9NP74 551 aa10.56□□□□□ -0.72
USP4-206ENST00000461553 TECRQ9NZ01 308 aaKnown RBP10.56□□□□□ -0.72
USP4-206ENST00000461553 KLK9Q9UKQ9 250 aa10.56□□□□□ -0.72
USP4-206ENST00000461553 DMRT1Q9Y5R6 373 aa10.56□□□□□ -0.72
USP4-206ENST00000461553 ZNF320A2RRD8 509 aa10.55□□□□□ -0.72
USP4-206ENST00000461553 PGLYRP1O75594 196 aaPredicted RBP10.55□□□□□ -0.72
USP4-206ENST00000461553 HLA-DMAP28067 261 aa10.55□□□□□ -0.72
USP4-206ENST00000461553 GPR183P32249 361 aa10.55□□□□□ -0.72
USP4-206ENST00000461553 RCVRNP35243 200 aa10.55□□□□□ -0.72
USP4-206ENST00000461553 MECP2P51608 486 aaKnown RBP10.55□□□□□ -0.72
USP4-206ENST00000461553 TSPAN5P62079 268 aa10.55□□□□□ -0.72
USP4-206ENST00000461553 GUCA2BQ16661 112 aa10.55□□□□□ -0.72
USP4-206ENST00000461553 ADAMTSL5Q6ZMM2 481 aa10.55□□□□□ -0.72
USP4-206ENST00000461553 SNX29P2Q8IUI4 249 aa10.55□□□□□ -0.72
USP4-206ENST00000461553 GDPD1Q8N9F7 314 aa10.55□□□□□ -0.72
USP4-206ENST00000461553 OR1L8Q8NGR8 309 aa10.55□□□□□ -0.72
USP4-206ENST00000461553 GPX8Q8TED1 209 aa10.55□□□□□ -0.72
USP4-206ENST00000461553 DGCR14Q96DF8 476 aaKnown RBP10.55□□□□□ -0.72
USP4-206ENST00000461553 NEURL2Q9BR09 285 aa10.55□□□□□ -0.72
USP4-206ENST00000461553 RYR2Q92736 4967 aa10.55□□□□□ -0.72
USP4-206ENST00000461553 CSMD3Q7Z407 3707 aa10.54□□□□□ -0.72
USP4-206ENST00000461553 TRAPPC2P0DI81 140 aa10.54□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms