RNA–Protein interactions for RNA: ENST00000454354.1

USP40-210, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2

Gene USP40, Length 348 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-210ENST00000454354 UPK2O00526 184 aa9.16□□□□□ -0.94
USP40-210ENST00000454354 DHFRP00374 187 aa9.16□□□□□ -0.94
USP40-210ENST00000454354 FRMD6-AS1P0C7T7 363 aa9.16□□□□□ -0.94
USP40-210ENST00000454354 MYOD1P15172 320 aa9.16□□□□□ -0.94
USP40-210ENST00000454354 HIST1H1BP16401 226 aaKnown RBP9.16□□□□□ -0.94
USP40-210ENST00000454354 F2RP25116 425 aa9.16□□□□□ -0.94
USP40-210ENST00000454354 HRH1P35367 487 aa9.16□□□□□ -0.94
USP40-210ENST00000454354 MECP2P51608 486 aaKnown RBP9.16□□□□□ -0.94
USP40-210ENST00000454354 CTF1Q16619 201 aa9.16□□□□□ -0.94
USP40-210ENST00000454354 SBSPONQ8IVN8 264 aa9.16□□□□□ -0.94
USP40-210ENST00000454354 CADM3Q8N126 398 aa9.16□□□□□ -0.94
USP40-210ENST00000454354 Q8N1Y9 231 aa9.16□□□□□ -0.94
USP40-210ENST00000454354 ASCL2Q99929 193 aa9.16□□□□□ -0.94
USP40-210ENST00000454354 SRSF8Q9BRL6 282 aaKnown RBP9.16□□□□□ -0.94
USP40-210ENST00000454354 THAP7Q9BT49 309 aaPredicted RBP9.16□□□□□ -0.94
USP40-210ENST00000454354 HRASLSQ9HDD0 168 aa9.16□□□□□ -0.94
USP40-210ENST00000454354 TMEM140Q9NV12 185 aa9.16□□□□□ -0.94
USP40-210ENST00000454354 PEMTQ9UBM1 199 aa9.16□□□□□ -0.94
USP40-210ENST00000454354 FBXL7Q9UJT9 491 aa9.16□□□□□ -0.94
USP40-210ENST00000454354 CSMD3Q7Z407 3707 aa9.15□□□□□ -0.94
USP40-210ENST00000454354 TRAV3A0A0B4J244 114 aa9.15□□□□□ -0.94
USP40-210ENST00000454354 SMIM31A0A1B0GVY4 71 aa9.15□□□□□ -0.94
USP40-210ENST00000454354 IGLC7A0M8Q6 106 aa9.15□□□□□ -0.94
USP40-210ENST00000454354 MARCH11A6NNE9 402 aa9.15□□□□□ -0.94
USP40-210ENST00000454354 GPR31O00270 319 aa9.15□□□□□ -0.94
USP40-210ENST00000454354 PGLYRP1O75594 196 aaPredicted RBP9.15□□□□□ -0.94
USP40-210ENST00000454354 RLN1P04808 185 aa9.15□□□□□ -0.94
USP40-210ENST00000454354 ELK1P19419 428 aa9.15□□□□□ -0.94
USP40-210ENST00000454354 RORCP51449 518 aa9.15□□□□□ -0.94
USP40-210ENST00000454354 THOC7Q6I9Y2 204 aaKnown RBP9.15□□□□□ -0.94
USP40-210ENST00000454354 LCN12Q6JVE5 192 aa9.15□□□□□ -0.94
USP40-210ENST00000454354 Q8N402 240 aa9.15□□□□□ -0.94
USP40-210ENST00000454354 OR2K2Q8NGT1 345 aa9.15□□□□□ -0.94
USP40-210ENST00000454354 CCDC140Q96MF4 163 aa9.15□□□□□ -0.94
USP40-210ENST00000454354 NAA50Q9GZZ1 169 aaKnown RBP9.15□□□□□ -0.94
USP40-210ENST00000454354 RYR3Q15413 4870 aa9.15□□□□□ -0.95
USP40-210ENST00000454354 PPP5D1E7EU14 171 aa9.14□□□□□ -0.95
USP40-210ENST00000454354 HPGDSO60760 199 aa9.14□□□□□ -0.95
USP40-210ENST00000454354 GGCTO75223 188 aaKnown RBP9.14□□□□□ -0.95
USP40-210ENST00000454354 NDUFB8O95169 186 aa9.14□□□□□ -0.95
USP40-210ENST00000454354 IGHV4-30-4P0DP06 118 aa9.14□□□□□ -0.95
USP40-210ENST00000454354 HLA-DMAP28067 261 aa9.14□□□□□ -0.95
USP40-210ENST00000454354 RCVRNP35243 200 aa9.14□□□□□ -0.95
USP40-210ENST00000454354 ADAMTSL5Q6ZMM2 481 aa9.14□□□□□ -0.95
USP40-210ENST00000454354 CMTM1Q8IZ96 169 aa9.14□□□□□ -0.95
USP40-210ENST00000454354 DMBX1Q8NFW5 382 aa9.14□□□□□ -0.95
USP40-210ENST00000454354 OR6F1Q8NGZ6 308 aa9.14□□□□□ -0.95
USP40-210ENST00000454354 EEF1AKMT3Q96AZ1 226 aa9.14□□□□□ -0.95
USP40-210ENST00000454354 DGCR14Q96DF8 476 aaKnown RBP9.14□□□□□ -0.95
USP40-210ENST00000454354 QTRT1Q9BXR0 403 aaKnown RBP9.14□□□□□ -0.95
USP40-210ENST00000454354 COMMD5Q9GZQ3 224 aa9.14□□□□□ -0.95
USP40-210ENST00000454354 FAM212BQ9NTI7 297 aaPredicted RBP9.14□□□□□ -0.95
USP40-210ENST00000454354 C19orf73Q9NVV2 129 aa9.14□□□□□ -0.95
USP40-210ENST00000454354 LGALS9O00182 355 aa9.13□□□□□ -0.95
USP40-210ENST00000454354 TPPPO94811 219 aa9.13□□□□□ -0.95
USP40-210ENST00000454354 REG1AP05451 166 aa9.13□□□□□ -0.95
USP40-210ENST00000454354 ZNF182P17025 639 aaPredicted RBP9.13□□□□□ -0.95
USP40-210ENST00000454354 UCP3P55916 312 aa9.13□□□□□ -0.95
USP40-210ENST00000454354 ERVK-16P61578 105 aa9.13□□□□□ -0.95
USP40-210ENST00000454354 ZNF585BQ52M93 769 aa9.13□□□□□ -0.95
USP40-210ENST00000454354 LPCAT3Q6P1A2 487 aa9.13□□□□□ -0.95
USP40-210ENST00000454354 MZT2AQ6P582 158 aa9.13□□□□□ -0.95
USP40-210ENST00000454354 HSD17B13Q7Z5P4 300 aaPredicted RBP9.13□□□□□ -0.95
USP40-210ENST00000454354 GPHB5Q86YW7 130 aa9.13□□□□□ -0.95
USP40-210ENST00000454354 SNX29P2Q8IUI4 249 aa9.13□□□□□ -0.95
USP40-210ENST00000454354 SGPP2Q8IWX5 399 aa9.13□□□□□ -0.95
USP40-210ENST00000454354 FCAMRQ8WWV6 532 aa9.13□□□□□ -0.95
USP40-210ENST00000454354 AP3S1Q92572 193 aa9.13□□□□□ -0.95
USP40-210ENST00000454354 CXorf58Q96LI9 332 aa9.13□□□□□ -0.95
USP40-210ENST00000454354 TRBV7-1A0A0A6YYK4 115 aa9.12□□□□□ -0.95
USP40-210ENST00000454354 IZUMO1RA6ND01 250 aa9.12□□□□□ -0.95
USP40-210ENST00000454354 MFSD2BA6NFX1 497 aa9.12□□□□□ -0.95
USP40-210ENST00000454354 A8MWP6 167 aa9.12□□□□□ -0.95
USP40-210ENST00000454354 DEFA4P12838 97 aa9.12□□□□□ -0.95
USP40-210ENST00000454354 ARL3P36405 182 aa9.12□□□□□ -0.95
USP40-210ENST00000454354 LPAR6P43657 344 aa9.12□□□□□ -0.95
USP40-210ENST00000454354 ALDH3B2P48448 385 aa9.12□□□□□ -0.95
USP40-210ENST00000454354 TSPAN5P62079 268 aa9.12□□□□□ -0.95
USP40-210ENST00000454354 GPR107Q5VW38 600 aa9.12□□□□□ -0.95
USP40-210ENST00000454354 CLEC19AQ6UXS0 136 aa9.12□□□□□ -0.95
USP40-210ENST00000454354 LAX1Q8IWV1 398 aa9.12□□□□□ -0.95
USP40-210ENST00000454354 GDPD1Q8N9F7 314 aa9.12□□□□□ -0.95
USP40-210ENST00000454354 RCHY1Q96PM5 261 aa9.12□□□□□ -0.95
USP40-210ENST00000454354 TM2D3Q9BRN9 247 aa9.12□□□□□ -0.95
USP40-210ENST00000454354 MRPS26Q9BYN8 205 aaKnown RBP9.12□□□□□ -0.95
USP40-210ENST00000454354 ZC4H2Q9NQZ6 224 aa9.12□□□□□ -0.95
USP40-210ENST00000454354 TEX50A0A1B0GTY4 177 aa9.11□□□□□ -0.95
USP40-210ENST00000454354 C2orf70A6NJV1 201 aa9.11□□□□□ -0.95
USP40-210ENST00000454354 OR2C1O95371 312 aa9.11□□□□□ -0.95
USP40-210ENST00000454354 IGHV3-23P01764 117 aa9.11□□□□□ -0.95
USP40-210ENST00000454354 HLA-AP01891 365 aaKnown RBP9.11□□□□□ -0.95
USP40-210ENST00000454354 TRAPPC2P0DI81 140 aa9.11□□□□□ -0.95
USP40-210ENST00000454354 TRAPPC2BP0DI82 140 aa9.11□□□□□ -0.95
USP40-210ENST00000454354 RPA2P15927 270 aa9.11□□□□□ -0.95
USP40-210ENST00000454354 PTBP1P26599 531 aaKnown RBP eCLIP9.11□□□□□ -0.952e-7■■■■□ 23.9
USP40-210ENST00000454354 WT1-ASQ06250 92 aa9.11□□□□□ -0.95
USP40-210ENST00000454354 GTSCR1Q86UQ5 136 aa9.11□□□□□ -0.95
USP40-210ENST00000454354 SLC38A6Q8IZM9 456 aa9.11□□□□□ -0.95
USP40-210ENST00000454354 OR10W1Q8NGF6 305 aa9.11□□□□□ -0.95
USP40-210ENST00000454354 OR1L8Q8NGR8 309 aa9.11□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms