RNA–Protein interactions for RNA: ENST00000448038.2

SYNE1-213, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 6,001 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-213ENST00000448038 ZNF503-AS2A6NEH8 195 aa6.16□□□□□ -1.42
SYNE1-213ENST00000448038 TGOLN2O43493 480 aa6.16□□□□□ -1.42
SYNE1-213ENST00000448038 LY6HO94772 140 aa6.16□□□□□ -1.42
SYNE1-213ENST00000448038 NPIPB3Q92617 1050 aa6.16□□□□□ -1.42
SYNE1-213ENST00000448038 METTL26Q96S19 204 aa6.16□□□□□ -1.42
SYNE1-213ENST00000448038 TRAV30A0A087WSZ9 112 aa6.16□□□□□ -1.42
SYNE1-213ENST00000448038 TMEM218A2RU14 115 aa6.16□□□□□ -1.42
SYNE1-213ENST00000448038 KIAA1324LA8MWY0 1029 aaPredicted RBP6.16□□□□□ -1.42
SYNE1-213ENST00000448038 E9PQ18 207 aa6.16□□□□□ -1.42
SYNE1-213ENST00000448038 SPINK4O60575 86 aa6.16□□□□□ -1.42
SYNE1-213ENST00000448038 SCGB1D1O95968 90 aa6.16□□□□□ -1.42
SYNE1-213ENST00000448038 ATP5IP56385 69 aaPredicted RBP6.16□□□□□ -1.42
SYNE1-213ENST00000448038 DSCR9P59020 149 aa6.16□□□□□ -1.42
SYNE1-213ENST00000448038 SUMO1P63165 101 aaKnown RBP6.16□□□□□ -1.42
SYNE1-213ENST00000448038 HLA-DRB5Q30154 266 aa6.16□□□□□ -1.42
SYNE1-213ENST00000448038 BSXQ3C1V8 233 aa6.16□□□□□ -1.42
SYNE1-213ENST00000448038 TXN2Q99757 166 aa6.16□□□□□ -1.42
SYNE1-213ENST00000448038 YAE1D1Q9NRH1 226 aa6.16□□□□□ -1.42
SYNE1-213ENST00000448038 BMPR1BO00238 502 aa6.16□□□□□ -1.42
SYNE1-213ENST00000448038 PDE6DO43924 150 aa6.16□□□□□ -1.42
SYNE1-213ENST00000448038 MPZP25189 248 aa6.16□□□□□ -1.42
SYNE1-213ENST00000448038 QRFPP83859 136 aa6.16□□□□□ -1.42
SYNE1-213ENST00000448038 WDR25Q64LD2 544 aaPredicted RBP6.16□□□□□ -1.42
SYNE1-213ENST00000448038 RPUSD1Q9UJJ7 312 aaKnown RBP6.16□□□□□ -1.42
SYNE1-213ENST00000448038 TMEM56-RWDD3S4R434 201 aa6.16□□□□□ -1.42
SYNE1-213ENST00000448038 HELTA6NFD8 242 aa6.16□□□□□ -1.42
SYNE1-213ENST00000448038 SRSF7Q16629 238 aaKnown RBP eCLIP6.16□□□□□ -1.42
SYNE1-213ENST00000448038 TUSC1Q2TAM9 212 aa6.16□□□□□ -1.42
SYNE1-213ENST00000448038 TMEM200BQ69YZ2 307 aa6.16□□□□□ -1.42
SYNE1-213ENST00000448038 C2CD4CQ8TF44 421 aa6.16□□□□□ -1.42
SYNE1-213ENST00000448038 A0A0B4J293 547 aa6.16□□□□□ -1.42
SYNE1-213ENST00000448038 H0Y8G0 127 aa6.16□□□□□ -1.42
SYNE1-213ENST00000448038 J3KRW8 73 aa6.16□□□□□ -1.42
SYNE1-213ENST00000448038 COL8A2P25067 703 aa6.16□□□□□ -1.42
SYNE1-213ENST00000448038 PAX6P26367 422 aa6.16□□□□□ -1.42
SYNE1-213ENST00000448038 Q6P435 159 aa6.16□□□□□ -1.42
SYNE1-213ENST00000448038 OR5AU1Q8NGC0 362 aa6.16□□□□□ -1.42
SYNE1-213ENST00000448038 SLX1AQ9BQ83 275 aa6.16□□□□□ -1.42
SYNE1-213ENST00000448038 TMEM204Q9BSN7 226 aa6.16□□□□□ -1.42
SYNE1-213ENST00000448038 C20orf202A1L168 122 aa6.15□□□□□ -1.42
SYNE1-213ENST00000448038 NAPSAO96009 420 aa6.15□□□□□ -1.42
SYNE1-213ENST00000448038 SAA1P0DJI8 122 aaPredicted RBP6.15□□□□□ -1.42
SYNE1-213ENST00000448038 CD24P25063 80 aa6.15□□□□□ -1.42
SYNE1-213ENST00000448038 FCGR2BP31994 310 aaPredicted RBP6.15□□□□□ -1.42
SYNE1-213ENST00000448038 TPPP2P59282 170 aa6.15□□□□□ -1.42
SYNE1-213ENST00000448038 PNRC1Q12796 327 aaPredicted RBP6.15□□□□□ -1.42
SYNE1-213ENST00000448038 C3orf36Q3SXR2 165 aa6.15□□□□□ -1.42
SYNE1-213ENST00000448038 DNAJC4Q9NNZ3 241 aa6.15□□□□□ -1.42
SYNE1-213ENST00000448038 ZNF581Q9P0T4 197 aa6.15□□□□□ -1.42
SYNE1-213ENST00000448038 A0A1W2PS18 150 aa6.15□□□□□ -1.42
SYNE1-213ENST00000448038 IGSF23A1L1A6 192 aa6.15□□□□□ -1.42
SYNE1-213ENST00000448038 RAMP3O60896 148 aa6.15□□□□□ -1.42
SYNE1-213ENST00000448038 OR2J3O76001 311 aa6.15□□□□□ -1.42
SYNE1-213ENST00000448038 F12P00748 615 aaPredicted RBP6.15□□□□□ -1.42
SYNE1-213ENST00000448038 DLK1P80370 383 aa6.15□□□□□ -1.42
SYNE1-213ENST00000448038 HEPN1Q6WQI6 88 aa6.15□□□□□ -1.42
SYNE1-213ENST00000448038 IGKV1D-17A0A075B6S4 117 aa6.15□□□□□ -1.42
SYNE1-213ENST00000448038 IGHV3-35A0A0C4DH35 117 aa6.15□□□□□ -1.42
SYNE1-213ENST00000448038 DUTP33316 252 aaKnown RBP6.15□□□□□ -1.42
SYNE1-213ENST00000448038 ID1P41134 155 aa6.15□□□□□ -1.42
SYNE1-213ENST00000448038 GAFA1Q96PS6 74 aa6.15□□□□□ -1.42
SYNE1-213ENST00000448038 SH3BGRL3Q9H299 93 aa6.15□□□□□ -1.42
SYNE1-213ENST00000448038 HIST1H1EP10412 219 aaKnown RBP6.15□□□□□ -1.43
SYNE1-213ENST00000448038 ZNF273Q14593 569 aa6.15□□□□□ -1.43
SYNE1-213ENST00000448038 FAM106AQ4KMX7 169 aa6.15□□□□□ -1.43
SYNE1-213ENST00000448038 SP5Q6BEB4 398 aaPredicted RBP6.15□□□□□ -1.43
SYNE1-213ENST00000448038 ARPC1AQ92747 370 aa6.15□□□□□ -1.43
SYNE1-213ENST00000448038 EEF1AKMT3Q96AZ1 226 aa6.15□□□□□ -1.43
SYNE1-213ENST00000448038 TRAV40A0A0B4J280 105 aa6.15□□□□□ -1.43
SYNE1-213ENST00000448038 CFDP00746 253 aaPredicted RBP6.15□□□□□ -1.43
SYNE1-213ENST00000448038 TRGV3P03979 118 aa6.15□□□□□ -1.43
SYNE1-213ENST00000448038 BCL2P10415 239 aa6.15□□□□□ -1.43
SYNE1-213ENST00000448038 NTF3P20783 257 aa6.15□□□□□ -1.43
SYNE1-213ENST00000448038 TFPI2P48307 235 aa6.15□□□□□ -1.43
SYNE1-213ENST00000448038 PDZD11Q5EBL8 140 aa6.15□□□□□ -1.43
SYNE1-213ENST00000448038 BPIFA4PQ86YQ2 179 aa6.15□□□□□ -1.43
SYNE1-213ENST00000448038 AP1S3Q96PC3 154 aa6.15□□□□□ -1.43
SYNE1-213ENST00000448038 FAM208BQ5VWN6 2430 aa6.15□□□□□ -1.43
SYNE1-213ENST00000448038 CEP192Q8TEP8 1941 aa6.14□□□□□ -1.43
SYNE1-213ENST00000448038 LINC00862A6NCI5 91 aa6.14□□□□□ -1.43
SYNE1-213ENST00000448038 MSGN1A6NI15 193 aa6.14□□□□□ -1.43
SYNE1-213ENST00000448038 NBR2O15453 112 aa6.14□□□□□ -1.43
SYNE1-213ENST00000448038 PQLC2Q6ZP29 291 aa6.14□□□□□ -1.43
SYNE1-213ENST00000448038 PPP1R27Q86WC6 154 aa6.14□□□□□ -1.43
SYNE1-213ENST00000448038 OR10G8Q8NGN5 311 aa6.14□□□□□ -1.43
SYNE1-213ENST00000448038 TNFRSF14Q92956 283 aa6.14□□□□□ -1.43
SYNE1-213ENST00000448038 C18orf12Q96KH6 178 aa6.14□□□□□ -1.43
SYNE1-213ENST00000448038 MUC22E2RYF6 1773 aaPredicted RBP6.14□□□□□ -1.43
SYNE1-213ENST00000448038 NMBP08949 121 aa6.14□□□□□ -1.43
SYNE1-213ENST00000448038 IGHV1-8P0DP01 117 aa6.14□□□□□ -1.43
SYNE1-213ENST00000448038 HIST1H1BP16401 226 aaKnown RBP6.14□□□□□ -1.43
SYNE1-213ENST00000448038 COL8A1P27658 744 aa6.14□□□□□ -1.43
SYNE1-213ENST00000448038 RSPO1Q2MKA7 263 aaPredicted RBP6.14□□□□□ -1.43
SYNE1-213ENST00000448038 RPEL1Q2QD12 228 aa6.14□□□□□ -1.43
SYNE1-213ENST00000448038 ASCL4Q6XD76 172 aa6.14□□□□□ -1.43
SYNE1-213ENST00000448038 RAB24Q969Q5 203 aa6.14□□□□□ -1.43
SYNE1-213ENST00000448038 TMEM131Q92545 1883 aa6.14□□□□□ -1.43
SYNE1-213ENST00000448038 IGHV2-26A0A0B4J1V2 119 aa6.14□□□□□ -1.43
SYNE1-213ENST00000448038 UPK2O00526 184 aa6.14□□□□□ -1.43
SYNE1-213ENST00000448038 TIMM23O14925 209 aa6.14□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms