RNA–Protein interactions for RNA: ENST00000443711.2

USP40-206, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 628 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-206ENST00000443711 OR51B2Q9Y5P1 312 aa12.47□□□□□ -0.41
USP40-206ENST00000443711 TET2Q6N021 2002 aaPredicted RBP12.47□□□□□ -0.41
USP40-206ENST00000443711 ZFHX3Q15911 3703 aa12.46□□□□□ -0.41
USP40-206ENST00000443711 A0A0B4J293 547 aa12.46□□□□□ -0.41
USP40-206ENST00000443711 C15orf61A6NNL5 157 aa12.46□□□□□ -0.41
USP40-206ENST00000443711 AP4M1O00189 453 aa12.46□□□□□ -0.41
USP40-206ENST00000443711 ADAP1O75689 374 aa12.46□□□□□ -0.41
USP40-206ENST00000443711 SULT1A3P0DMM9 295 aa12.46□□□□□ -0.41
USP40-206ENST00000443711 SULT1A4P0DMN0 295 aa12.46□□□□□ -0.41
USP40-206ENST00000443711 SLC25A6P12236 298 aa12.46□□□□□ -0.41
USP40-206ENST00000443711 VDAC2P45880 294 aaPredicted RBP12.46□□□□□ -0.41
USP40-206ENST00000443711 RPL27AP46776 148 aaKnown RBP12.46□□□□□ -0.41
USP40-206ENST00000443711 RIPPLY3P57055 190 aa12.46□□□□□ -0.41
USP40-206ENST00000443711 SSBP2P81877 361 aaPredicted RBP12.46□□□□□ -0.41
USP40-206ENST00000443711 SMCO1Q147U7 214 aa12.46□□□□□ -0.41
USP40-206ENST00000443711 Q6ZRM9 215 aa12.46□□□□□ -0.41
USP40-206ENST00000443711 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP12.46□□□□□ -0.41
USP40-206ENST00000443711 OR1L8Q8NGR8 309 aa12.46□□□□□ -0.41
USP40-206ENST00000443711 TAF15Q92804 592 aaKnown RBP eCLIP12.46□□□□□ -0.41
USP40-206ENST00000443711 SPIN2AQ99865 258 aa12.46□□□□□ -0.41
USP40-206ENST00000443711 SPIN2BQ9BPZ2 258 aa12.46□□□□□ -0.41
USP40-206ENST00000443711 PARP11Q9NR21 331 aa12.46□□□□□ -0.41
USP40-206ENST00000443711 TMEM14BQ9NUH8 114 aa12.46□□□□□ -0.41
USP40-206ENST00000443711 COA4Q9NYJ1 87 aa12.46□□□□□ -0.41
USP40-206ENST00000443711 CACNG5Q9UF02 275 aa12.46□□□□□ -0.41
USP40-206ENST00000443711 FOXA2Q9Y261 457 aaPredicted RBP12.46□□□□□ -0.41
USP40-206ENST00000443711 ALG5Q9Y673 324 aa12.46□□□□□ -0.41
USP40-206ENST00000443711 TEX50A0A1B0GTY4 177 aa12.45□□□□□ -0.42
USP40-206ENST00000443711 ATP6V0E1O15342 81 aa12.45□□□□□ -0.42
USP40-206ENST00000443711 SSNA1O43805 119 aa12.45□□□□□ -0.42
USP40-206ENST00000443711 IGF1P05019 195 aa12.45□□□□□ -0.42
USP40-206ENST00000443711 OR2B8PP59922 312 aa12.45□□□□□ -0.42
USP40-206ENST00000443711 TMEM267Q0VDI3 215 aaPredicted RBP12.45□□□□□ -0.42
USP40-206ENST00000443711 THOC7Q6I9Y2 204 aaKnown RBP12.45□□□□□ -0.42
USP40-206ENST00000443711 ZNF429Q86V71 674 aa12.45□□□□□ -0.42
USP40-206ENST00000443711 OR5B3Q8NH48 314 aa12.45□□□□□ -0.42
USP40-206ENST00000443711 SGMS2Q8NHU3 365 aa12.45□□□□□ -0.42
USP40-206ENST00000443711 LINC01006Q8NI28 216 aa12.45□□□□□ -0.42
USP40-206ENST00000443711 GRPEL2Q8TAA5 225 aa12.45□□□□□ -0.42
USP40-206ENST00000443711 SRSF12Q8WXF0 261 aaKnown RBP12.45□□□□□ -0.42
USP40-206ENST00000443711 PDCD10Q9BUL8 212 aa12.45□□□□□ -0.42
USP40-206ENST00000443711 CACFD1Q9UGQ2 172 aa12.45□□□□□ -0.42
USP40-206ENST00000443711 ZNF257Q9Y2Q1 563 aa12.45□□□□□ -0.42
USP40-206ENST00000443711 A0A1B0GUS0 222 aa12.44□□□□□ -0.42
USP40-206ENST00000443711 MSGN1A6NI15 193 aa12.44□□□□□ -0.42
USP40-206ENST00000443711 OPN1MWP04001 364 aa12.44□□□□□ -0.42
USP40-206ENST00000443711 TRAPPC2P0DI81 140 aa12.44□□□□□ -0.42
USP40-206ENST00000443711 TRAPPC2BP0DI82 140 aa12.44□□□□□ -0.42
USP40-206ENST00000443711 OPN1MW2P0DN77 364 aa12.44□□□□□ -0.42
USP40-206ENST00000443711 OPN1MW3P0DN78 364 aa12.44□□□□□ -0.42
USP40-206ENST00000443711 EGR2P11161 476 aaPredicted RBP12.44□□□□□ -0.42
USP40-206ENST00000443711 MYOD1P15172 320 aa12.44□□□□□ -0.42
USP40-206ENST00000443711 CRIP2P52943 208 aaPredicted RBP12.44□□□□□ -0.42
USP40-206ENST00000443711 HSPE1P61604 102 aaKnown RBP12.44□□□□□ -0.42
USP40-206ENST00000443711 NDPQ00604 133 aa12.44□□□□□ -0.42
USP40-206ENST00000443711 FOXL1Q12952 345 aa12.44□□□□□ -0.42
USP40-206ENST00000443711 TMEM95Q3KNT9 176 aa12.44□□□□□ -0.42
USP40-206ENST00000443711 C10orf55Q5SWW7 151 aa12.44□□□□□ -0.42
USP40-206ENST00000443711 OR1S1Q8NH92 325 aa12.44□□□□□ -0.42
USP40-206ENST00000443711 FYTTD1Q96QD9 318 aaKnown RBP12.44□□□□□ -0.42
USP40-206ENST00000443711 FAM103A1Q9BTL3 118 aaKnown RBP12.44□□□□□ -0.42
USP40-206ENST00000443711 QTRT1Q9BXR0 403 aaKnown RBP12.44□□□□□ -0.42
USP40-206ENST00000443711 GON7Q9BXV9 100 aa12.44□□□□□ -0.42
USP40-206ENST00000443711 SERTAD4Q9NUC0 356 aa12.44□□□□□ -0.42
USP40-206ENST00000443711 ZNF580Q9UK33 172 aa12.44□□□□□ -0.42
USP40-206ENST00000443711 TRAV41A0A0B4J266 112 aa12.43□□□□□ -0.42
USP40-206ENST00000443711 C13orf42A0A1B0GVH6 325 aa12.43□□□□□ -0.42
USP40-206ENST00000443711 CLPSL1A2RUU4 121 aa12.43□□□□□ -0.42
USP40-206ENST00000443711 ST8SIA3O43173 380 aa12.43□□□□□ -0.42
USP40-206ENST00000443711 IFNA17P01571 189 aa12.43□□□□□ -0.42
USP40-206ENST00000443711 KRTAP24-1Q3LI83 254 aa12.43□□□□□ -0.42
USP40-206ENST00000443711 AARDQ4LEZ3 155 aa12.43□□□□□ -0.42
USP40-206ENST00000443711 UNQ5815/PRO19632Q6UWF5 114 aa12.43□□□□□ -0.42
USP40-206ENST00000443711 STPG2Q8N412 459 aa12.43□□□□□ -0.42
USP40-206ENST00000443711 TMEM68Q96MH6 324 aa12.43□□□□□ -0.42
USP40-206ENST00000443711 HINT2Q9BX68 163 aa12.43□□□□□ -0.42
USP40-206ENST00000443711 LINC00527Q9UJ94 153 aa12.43□□□□□ -0.42
USP40-206ENST00000443711 FBXO7Q9Y3I1 522 aa12.43□□□□□ -0.42
USP40-206ENST00000443711 WSB1Q9Y6I7 421 aa12.43□□□□□ -0.42
USP40-206ENST00000443711 ATRQ13535 2644 aa12.42□□□□□ -0.42
USP40-206ENST00000443711 TMEM89A2RUT3 159 aa12.42□□□□□ -0.42
USP40-206ENST00000443711 C5orf51A6NDU8 294 aa12.42□□□□□ -0.42
USP40-206ENST00000443711 FAM25EA8MYX2 175 aa12.42□□□□□ -0.42
USP40-206ENST00000443711 CCSO14618 274 aa12.42□□□□□ -0.42
USP40-206ENST00000443711 PITX3O75364 302 aa12.42□□□□□ -0.42
USP40-206ENST00000443711 SPCS3P61009 180 aa12.42□□□□□ -0.42
USP40-206ENST00000443711 IAH1Q2TAA2 248 aaPredicted RBP12.42□□□□□ -0.42
USP40-206ENST00000443711 AKIRIN2Q53H80 203 aa12.42□□□□□ -0.42
USP40-206ENST00000443711 GSG1LQ6UXU4 331 aa12.42□□□□□ -0.42
USP40-206ENST00000443711 CENPVQ7Z7K6 275 aaPredicted RBP12.42□□□□□ -0.42
USP40-206ENST00000443711 MRPL41Q8IXM3 137 aaKnown RBP12.42□□□□□ -0.42
USP40-206ENST00000443711 LFNGQ8NES3 379 aa12.42□□□□□ -0.42
USP40-206ENST00000443711 OR52E5Q8NH55 327 aa12.42□□□□□ -0.42
USP40-206ENST00000443711 TMEM158Q8WZ71 300 aa12.42□□□□□ -0.42
USP40-206ENST00000443711 OR10C1Q96KK4 312 aa12.42□□□□□ -0.42
USP40-206ENST00000443711 NOL4LQ96MY1 436 aaPredicted RBP12.42□□□□□ -0.42
USP40-206ENST00000443711 SRSF8Q9BRL6 282 aaKnown RBP12.42□□□□□ -0.42
USP40-206ENST00000443711 NDUFA4L2Q9NRX3 87 aa12.42□□□□□ -0.42
USP40-206ENST00000443711 RNF114Q9Y508 228 aa12.42□□□□□ -0.42
USP40-206ENST00000443711 CUBNO60494 3623 aa12.42□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 44.3 ms