RNA–Protein interactions for RNA: ENST00000404484.8

TPM1-208, Transcript of tropomyosin 1, humanhuman

TSL 1 (best) BASIC

Gene TPM1, Length 1,568 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-208ENST00000404484 TMEM14BQ9NUH8 114 aa16.94■□□□□ 0.3
TPM1-208ENST00000404484 FBXL17Q9UF56 701 aa16.94■□□□□ 0.3
TPM1-208ENST00000404484 UBQLN2Q9UHD9 624 aa16.94■□□□□ 0.3
TPM1-208ENST00000404484 IGSF23A1L1A6 192 aa16.93■□□□□ 0.3
TPM1-208ENST00000404484 SRRM4A7MD48 611 aaKnown RBP16.93■□□□□ 0.3
TPM1-208ENST00000404484 SCAF4O95104 1147 aaKnown RBP16.93■□□□□ 0.3
TPM1-208ENST00000404484 IGHV4-31P0DP07 118 aa16.93■□□□□ 0.3
TPM1-208ENST00000404484 TPT1P13693 172 aaKnown RBP16.93■□□□□ 0.3
TPM1-208ENST00000404484 GATA3P23771 443 aa16.93■□□□□ 0.3
TPM1-208ENST00000404484 TSNAXQ99598 290 aaKnown RBP16.93■□□□□ 0.3
TPM1-208ENST00000404484 ZNF257Q9Y2Q1 563 aa16.93■□□□□ 0.3
TPM1-208ENST00000404484 JMJD1CQ15652 2540 aa16.92■□□□□ 0.3
TPM1-208ENST00000404484 ABCA2Q9BZC7 2435 aa16.92■□□□□ 0.3
TPM1-208ENST00000404484 TRAV20A0A0B4J274 112 aa16.92■□□□□ 0.3
TPM1-208ENST00000404484 KBTBD11O94819 623 aa16.92■□□□□ 0.3
TPM1-208ENST00000404484 SPDEFO95238 335 aa16.92■□□□□ 0.3
TPM1-208ENST00000404484 FGF2P09038 288 aa16.92■□□□□ 0.3
TPM1-208ENST00000404484 CD1BP29016 333 aa16.92■□□□□ 0.3
TPM1-208ENST00000404484 HSPE1P61604 102 aaKnown RBP16.92■□□□□ 0.3
TPM1-208ENST00000404484 PHYHIPLQ96FC7 376 aa16.92■□□□□ 0.3
TPM1-208ENST00000404484 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP16.92■□□□□ 0.35e-6■■■□□ 16.3
TPM1-208ENST00000404484 WNK2Q9Y3S1 2297 aa16.92■□□□□ 0.3
TPM1-208ENST00000404484 BORCS7-ASMTA0A0B4J1R7 106 aa16.91■□□□□ 0.3
TPM1-208ENST00000404484 IGHV3-72A0A0B4J1Y9 119 aa16.91■□□□□ 0.3
TPM1-208ENST00000404484 TRAV3A0A0B4J244 114 aa16.91■□□□□ 0.3
TPM1-208ENST00000404484 INAFM1C9JVW0 142 aa16.91■□□□□ 0.3
TPM1-208ENST00000404484 JTBO76095 146 aa16.91■□□□□ 0.3
TPM1-208ENST00000404484 EXOSC2Q13868 293 aaKnown RBP16.91■□□□□ 0.3
TPM1-208ENST00000404484 HABP2Q14520 560 aaPredicted RBP16.91■□□□□ 0.3
TPM1-208ENST00000404484 CYB5R2Q6BCY4 276 aa16.91■□□□□ 0.3
TPM1-208ENST00000404484 PDZD9Q8IXQ8 264 aa16.91■□□□□ 0.3
TPM1-208ENST00000404484 TMEM167AQ8TBQ9 72 aa16.91■□□□□ 0.3
TPM1-208ENST00000404484 CYTL1Q9NRR1 136 aa16.91■□□□□ 0.3
TPM1-208ENST00000404484 TIMM23O14925 209 aa16.9■□□□□ 0.3
TPM1-208ENST00000404484 SULT1A1P50225 295 aa16.9■□□□□ 0.3
TPM1-208ENST00000404484 RIPPLY3P57055 190 aa16.9■□□□□ 0.3
TPM1-208ENST00000404484 RPP30P78346 268 aaKnown RBP16.9■□□□□ 0.3
TPM1-208ENST00000404484 LDLRAD2Q5SZI1 272 aa16.9■□□□□ 0.3
TPM1-208ENST00000404484 OR5B3Q8NH48 314 aa16.9■□□□□ 0.3
TPM1-208ENST00000404484 MALSU1Q96EH3 234 aa16.9■□□□□ 0.3
TPM1-208ENST00000404484 HIPK2Q9H2X6 1198 aa16.9■□□□□ 0.3
TPM1-208ENST00000404484 YAE1D1Q9NRH1 226 aa16.9■□□□□ 0.3
TPM1-208ENST00000404484 TCF19Q9Y242 345 aa16.9■□□□□ 0.3
TPM1-208ENST00000404484 STRAPQ9Y3F4 350 aaKnown RBP16.9■□□□□ 0.3
TPM1-208ENST00000404484 HILPDAQ9Y5L2 63 aa16.9■□□□□ 0.3
TPM1-208ENST00000404484 OR51B2Q9Y5P1 312 aa16.9■□□□□ 0.3
TPM1-208ENST00000404484 A0A1W2PRD5 423 aa16.89■□□□□ 0.3
TPM1-208ENST00000404484 A0A1W2PRF3 423 aa16.89■□□□□ 0.3
TPM1-208ENST00000404484 A0A1W2PRM7 423 aa16.89■□□□□ 0.3
TPM1-208ENST00000404484 H3BP45 60 aa16.89■□□□□ 0.3
TPM1-208ENST00000404484 CFDP00746 253 aaPredicted RBP16.89■□□□□ 0.3
TPM1-208ENST00000404484 IGLV2-23P01705 113 aa16.89■□□□□ 0.3
TPM1-208ENST00000404484 RPL8P62917 257 aaKnown RBP16.89■□□□□ 0.3
TPM1-208ENST00000404484 NHLH2Q02577 135 aa16.89■□□□□ 0.3
TPM1-208ENST00000404484 SPANXN5Q5MJ07 72 aa16.89■□□□□ 0.3
TPM1-208ENST00000404484 LHFPL4Q7Z7J7 247 aa16.89■□□□□ 0.3
TPM1-208ENST00000404484 BAP18Q8IXM2 172 aa16.89■□□□□ 0.3
TPM1-208ENST00000404484 LINC01356Q8N9X3 169 aa16.89■□□□□ 0.3
TPM1-208ENST00000404484 TEX45Q8NA69 505 aa16.89■□□□□ 0.3
TPM1-208ENST00000404484 SCARB1Q8WTV0 552 aa16.89■□□□□ 0.3
TPM1-208ENST00000404484 ENY2Q9NPA8 101 aa16.89■□□□□ 0.3
TPM1-208ENST00000404484 HOXA1P49639 335 aaPredicted RBP16.89■□□□□ 0.29
TPM1-208ENST00000404484 HBG1P69891 147 aa16.89■□□□□ 0.29
TPM1-208ENST00000404484 HBG2P69892 147 aa16.89■□□□□ 0.29
TPM1-208ENST00000404484 ZNF266Q14584 549 aa16.89■□□□□ 0.29
TPM1-208ENST00000404484 EIF5AL1Q6IS14 154 aaKnown RBP16.89■□□□□ 0.29
TPM1-208ENST00000404484 STPG2Q8N412 459 aa16.89■□□□□ 0.29
TPM1-208ENST00000404484 OR1S2Q8NGQ3 325 aa16.89■□□□□ 0.29
TPM1-208ENST00000404484 ZDHHC16Q969W1 377 aa16.89■□□□□ 0.29
TPM1-208ENST00000404484 SMIM3Q9BZL3 60 aa16.89■□□□□ 0.29
TPM1-208ENST00000404484 AUP1Q9Y679 476 aa16.89■□□□□ 0.29
TPM1-208ENST00000404484 CST7O76096 145 aa16.88■□□□□ 0.29
TPM1-208ENST00000404484 SSX2Q16385 188 aa16.88■□□□□ 0.29
TPM1-208ENST00000404484 UBAC2Q8NBM4 344 aa16.88■□□□□ 0.29
TPM1-208ENST00000404484 CFHR4Q92496 578 aa16.88■□□□□ 0.29
TPM1-208ENST00000404484 COMMD5Q9GZQ3 224 aa16.88■□□□□ 0.29
TPM1-208ENST00000404484 HEYLQ9NQ87 328 aaPredicted RBP16.88■□□□□ 0.29
TPM1-208ENST00000404484 NPFFO15130 113 aa16.87■□□□□ 0.29
TPM1-208ENST00000404484 SLC25A17O43808 307 aa16.87■□□□□ 0.29
TPM1-208ENST00000404484 DFFBO76075 338 aa16.87■□□□□ 0.29
TPM1-208ENST00000404484 VENTXO95231 258 aa16.87■□□□□ 0.29
TPM1-208ENST00000404484 RAB14P61106 215 aa16.87■□□□□ 0.29
TPM1-208ENST00000404484 PRCDQ00LT1 54 aa16.87■□□□□ 0.29
TPM1-208ENST00000404484 TMEM267Q0VDI3 215 aaPredicted RBP16.87■□□□□ 0.29
TPM1-208ENST00000404484 NDUFA5Q16718 116 aa16.87■□□□□ 0.29
TPM1-208ENST00000404484 RPL7L1Q6DKI1 246 aaKnown RBP16.87■□□□□ 0.29
TPM1-208ENST00000404484 TMEM14EPQ6UXP3 125 aa16.87■□□□□ 0.29
TPM1-208ENST00000404484 OR5C1Q8NGR4 320 aa16.87■□□□□ 0.29
TPM1-208ENST00000404484 METTL15P1P0C7V9 234 aa16.86■□□□□ 0.29
TPM1-208ENST00000404484 DYNLT3P51808 116 aa16.86■□□□□ 0.29
TPM1-208ENST00000404484 ALKAL2Q6UX46 152 aa16.86■□□□□ 0.29
TPM1-208ENST00000404484 OR1L8Q8NGR8 309 aa16.86■□□□□ 0.29
TPM1-208ENST00000404484 PLEKHA3Q9HB20 300 aa16.86■□□□□ 0.29
TPM1-208ENST00000404484 HIF1ANQ9NWT6 349 aa16.86■□□□□ 0.29
TPM1-208ENST00000404484 CENPVL3A0A0U1RRI6 287 aa16.85■□□□□ 0.29
TPM1-208ENST00000404484 MOSP00540 346 aa16.85■□□□□ 0.29
TPM1-208ENST00000404484 MAS1LP35410 378 aa16.85■□□□□ 0.29
TPM1-208ENST00000404484 SAA4P35542 130 aa16.85■□□□□ 0.29
TPM1-208ENST00000404484 VDAC2P45880 294 aaPredicted RBP16.85■□□□□ 0.29
TPM1-208ENST00000404484 PSG5Q15238 335 aa16.85■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms