RNA–Protein interactions for RNA: ENST00000380285.7

SNX1-202, Transcript of sorting nexin 1, humanhuman

TSL 1 (best)

Gene SNX1, Length 8,119 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-202ENST00000380285 GNB1LQ9BYB4 327 aa8.16□□□□□ -1.1
SNX1-202ENST00000380285 SRSF7Q16629 238 aaKnown RBP eCLIP8.16□□□□□ -1.1
SNX1-202ENST00000380285 C9orf50Q5SZB4 431 aa8.16□□□□□ -1.1
SNX1-202ENST00000380285 WFDC6Q9BQY6 131 aa8.16□□□□□ -1.1
SNX1-202ENST00000380285 WBP1LQ9NX94 342 aa8.16□□□□□ -1.1
SNX1-202ENST00000380285 LAMTOR2Q9Y2Q5 125 aa8.16□□□□□ -1.1
SNX1-202ENST00000380285 EMP1P54849 157 aa8.16□□□□□ -1.1
SNX1-202ENST00000380285 PEX7O00628 323 aa8.16□□□□□ -1.1
SNX1-202ENST00000380285 IL6RP08887 468 aaPredicted RBP8.16□□□□□ -1.1
SNX1-202ENST00000380285 FCGR2BP31994 310 aaPredicted RBP8.16□□□□□ -1.1
SNX1-202ENST00000380285 LINC00114Q6XXX2 140 aa8.16□□□□□ -1.1
SNX1-202ENST00000380285 NCOR1P1Q9H4R4 102 aa8.16□□□□□ -1.1
SNX1-202ENST00000380285 RPP21Q9H633 154 aaKnown RBP8.16□□□□□ -1.1
SNX1-202ENST00000380285 DEFB123Q8N688 67 aa8.16□□□□□ -1.1
SNX1-202ENST00000380285 NEU1Q99519 415 aa8.16□□□□□ -1.1
SNX1-202ENST00000380285 IGKV3-11P04433 115 aa8.16□□□□□ -1.1
SNX1-202ENST00000380285 MBD3L1Q8WWY6 194 aa8.16□□□□□ -1.1
SNX1-202ENST00000380285 C18orf12Q96KH6 178 aa8.16□□□□□ -1.1
SNX1-202ENST00000380285 NRTNQ99748 197 aa8.16□□□□□ -1.1
SNX1-202ENST00000380285 SCN5AQ14524 2016 aa8.16□□□□□ -1.1
SNX1-202ENST00000380285 BTCP35070 178 aa8.16□□□□□ -1.1
SNX1-202ENST00000380285 PRSS8Q16651 343 aa8.16□□□□□ -1.1
SNX1-202ENST00000380285 PCSK4Q6UW60 755 aa8.16□□□□□ -1.1
SNX1-202ENST00000380285 GEMIN7Q9H840 131 aaKnown RBP8.16□□□□□ -1.1
SNX1-202ENST00000380285 CCL13Q99616 98 aa8.15□□□□□ -1.1
SNX1-202ENST00000380285 TMEM106BQ9NUM4 274 aa8.15□□□□□ -1.1
SNX1-202ENST00000380285 ORMDL3Q8N138 153 aa8.15□□□□□ -1.1
SNX1-202ENST00000380285 NRXN2Q9P2S2 1712 aa8.15□□□□□ -1.1
SNX1-202ENST00000380285 XIRP1Q702N8 1843 aaKnown RBP8.15□□□□□ -1.1
SNX1-202ENST00000380285 TSPAN13O95857 204 aa8.15□□□□□ -1.1
SNX1-202ENST00000380285 CCL4P13236 92 aa8.15□□□□□ -1.1
SNX1-202ENST00000380285 SEC11AP67812 179 aa8.15□□□□□ -1.1
SNX1-202ENST00000380285 LINC00305Q7Z4B0 112 aa8.15□□□□□ -1.1
SNX1-202ENST00000380285 CHCHD1Q96BP2 118 aaKnown RBP8.15□□□□□ -1.1
SNX1-202ENST00000380285 SGK494Q96LW2 274 aa8.15□□□□□ -1.1
SNX1-202ENST00000380285 CFHR5Q9BXR6 569 aa8.15□□□□□ -1.1
SNX1-202ENST00000380285 OSTCQ9NRP0 149 aa8.15□□□□□ -1.1
SNX1-202ENST00000380285 AHCTF1Q8WYP5 2266 aa8.15□□□□□ -1.1
SNX1-202ENST00000380285 RASL11AQ6T310 242 aa8.15□□□□□ -1.1
SNX1-202ENST00000380285 HEPN1Q6WQI6 88 aa8.15□□□□□ -1.1
SNX1-202ENST00000380285 NR2C2APQ86WQ0 139 aa8.15□□□□□ -1.1
SNX1-202ENST00000380285 CITED2Q99967 270 aaPredicted RBP8.15□□□□□ -1.1
SNX1-202ENST00000380285 APC2O95996 2303 aa8.15□□□□□ -1.11
SNX1-202ENST00000380285 TRBV20OR9-2A0A075B6H5 130 aa8.15□□□□□ -1.11
SNX1-202ENST00000380285 REG1BP48304 166 aa8.15□□□□□ -1.11
SNX1-202ENST00000380285 CCL20P78556 96 aa8.15□□□□□ -1.11
SNX1-202ENST00000380285 FAM106AQ4KMX7 169 aa8.15□□□□□ -1.11
SNX1-202ENST00000380285 ATP5L2Q7Z4Y8 100 aa8.15□□□□□ -1.11
SNX1-202ENST00000380285 SMRP1Q8NCR6 262 aa8.15□□□□□ -1.11
SNX1-202ENST00000380285 MYLKQ15746 1914 aa8.15□□□□□ -1.11
SNX1-202ENST00000380285 TRBV24-1A0A075B6N3 115 aa8.15□□□□□ -1.11
SNX1-202ENST00000380285 TRAV1-1A0A0B4J248 108 aa8.15□□□□□ -1.11
SNX1-202ENST00000380285 PRSS2P07478 247 aa8.15□□□□□ -1.11
SNX1-202ENST00000380285 EEF1AKMT3Q96AZ1 226 aa8.15□□□□□ -1.11
SNX1-202ENST00000380285 RTN4RQ9BZR6 473 aa8.15□□□□□ -1.11
SNX1-202ENST00000380285 ZNF703Q9H7S9 590 aaPredicted RBP8.15□□□□□ -1.11
SNX1-202ENST00000380285 ST20Q9HBF5 79 aa8.15□□□□□ -1.11
SNX1-202ENST00000380285 NPIPB11E5RHQ5 1161 aa8.14□□□□□ -1.11
SNX1-202ENST00000380285 H7C2G1 150 aa8.14□□□□□ -1.11
SNX1-202ENST00000380285 EGR4Q05215 589 aa8.14□□□□□ -1.11
SNX1-202ENST00000380285 KLF14Q8TD94 323 aaPredicted RBP8.14□□□□□ -1.11
SNX1-202ENST00000380285 C2orf88Q9BSF0 95 aa8.14□□□□□ -1.11
SNX1-202ENST00000380285 IFI27L2Q9H2X8 130 aa8.14□□□□□ -1.11
SNX1-202ENST00000380285 LOC285556D6RIA3 1793 aa8.14□□□□□ -1.11
SNX1-202ENST00000380285 SLC17A3O00476 420 aa8.14□□□□□ -1.11
SNX1-202ENST00000380285 RNASE1P07998 156 aaKnown RBP8.14□□□□□ -1.11
SNX1-202ENST00000380285 NBEAP1P0C6P0 100 aa8.14□□□□□ -1.11
SNX1-202ENST00000380285 RNF224P0DH78 156 aa8.14□□□□□ -1.11
SNX1-202ENST00000380285 UCNP55089 124 aa8.14□□□□□ -1.11
SNX1-202ENST00000380285 ICAM4Q14773 271 aa8.14□□□□□ -1.11
SNX1-202ENST00000380285 KIAA1644Q3SXP7 199 aa8.14□□□□□ -1.11
SNX1-202ENST00000380285 GOLT1AQ6ZVE7 132 aa8.14□□□□□ -1.11
SNX1-202ENST00000380285 PNKDQ8N490 385 aa8.14□□□□□ -1.11
SNX1-202ENST00000380285 C1orf162Q8NEQ5 155 aaPredicted RBP8.14□□□□□ -1.11
SNX1-202ENST00000380285 SPCS1Q9Y6A9 102 aa8.14□□□□□ -1.11
SNX1-202ENST00000380285 TRAV9-2A0A087WT02 112 aa8.14□□□□□ -1.11
SNX1-202ENST00000380285 MBNL2Q5VZF2 373 aaKnown RBP8.14□□□□□ -1.11
SNX1-202ENST00000380285 CLEC7AQ9BXN2 247 aa8.14□□□□□ -1.11
SNX1-202ENST00000380285 LPAR2Q9HBW0 351 aa8.14□□□□□ -1.11
SNX1-202ENST00000380285 hCG_38984A0A1B0GV85 526 aa8.14□□□□□ -1.11
SNX1-202ENST00000380285 SHISA3A0PJX4 238 aa8.14□□□□□ -1.11
SNX1-202ENST00000380285 MSGN1A6NI15 193 aa8.14□□□□□ -1.11
SNX1-202ENST00000380285 GREM1O60565 184 aa8.14□□□□□ -1.11
SNX1-202ENST00000380285 RPL23P62829 140 aaKnown RBP8.14□□□□□ -1.11
SNX1-202ENST00000380285 F11RQ9Y624 299 aaKnown RBP8.14□□□□□ -1.11
SNX1-202ENST00000380285 PPBPP02775 128 aa8.14□□□□□ -1.11
SNX1-202ENST00000380285 CTSSP25774 331 aa8.14□□□□□ -1.11
SNX1-202ENST00000380285 SRSF5Q13243 272 aaKnown RBP8.14□□□□□ -1.11
SNX1-202ENST00000380285 C3AR1Q16581 482 aa8.14□□□□□ -1.11
SNX1-202ENST00000380285 MAFAQ8NHW3 353 aaPredicted RBP8.14□□□□□ -1.11
SNX1-202ENST00000380285 RNF126Q9BV68 326 aa8.14□□□□□ -1.11
SNX1-202ENST00000380285 LINC00587B1AMM8 73 aa8.14□□□□□ -1.11
SNX1-202ENST00000380285 CD5P06127 495 aa8.14□□□□□ -1.11
SNX1-202ENST00000380285 ZNF525Q8N782 197 aa8.14□□□□□ -1.11
SNX1-202ENST00000380285 ITLN1Q8WWA0 313 aa8.14□□□□□ -1.11
SNX1-202ENST00000380285 DDB2Q92466 427 aa8.14□□□□□ -1.11
SNX1-202ENST00000380285 LOXL4Q96JB6 756 aa8.14□□□□□ -1.11
SNX1-202ENST00000380285 SLC25A2Q9BXI2 301 aa8.14□□□□□ -1.11
SNX1-202ENST00000380285 GPR6P46095 362 aaPredicted RBP8.13□□□□□ -1.11
SNX1-202ENST00000380285 RRN3P1Q2M238 152 aa8.13□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 81.1 ms