RNA–Protein interactions for RNA: ENST00000373602.9

CCDC28B-201, Transcript of coiled-coil domain containing 28B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28B, Length 1,089 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-201ENST00000373602 OR2B8PP59922 312 aa16.48■□□□□ 0.23
CCDC28B-201ENST00000373602 VBP1P61758 197 aa16.48■□□□□ 0.23
CCDC28B-201ENST00000373602 LCN12Q6JVE5 192 aa16.48■□□□□ 0.23
CCDC28B-201ENST00000373602 LYSMD2Q8IV50 215 aa16.48■□□□□ 0.23
CCDC28B-201ENST00000373602 GPX8Q8TED1 209 aa16.48■□□□□ 0.23
CCDC28B-201ENST00000373602 RCHY1Q96PM5 261 aa16.48■□□□□ 0.23
CCDC28B-201ENST00000373602 TMEM140Q9NV12 185 aa16.48■□□□□ 0.23
CCDC28B-201ENST00000373602 COMMD9Q9P000 198 aa16.48■□□□□ 0.23
CCDC28B-201ENST00000373602 COMMD3Q9UBI1 195 aa16.48■□□□□ 0.23
CCDC28B-201ENST00000373602 GGCTO75223 188 aaKnown RBP16.47■□□□□ 0.23
CCDC28B-201ENST00000373602 S1PR2O95136 353 aa16.47■□□□□ 0.23
CCDC28B-201ENST00000373602 APOA1P02647 267 aa16.47■□□□□ 0.23
CCDC28B-201ENST00000373602 FGF2P09038 288 aa16.47■□□□□ 0.23
CCDC28B-201ENST00000373602 HIST1H1BP16401 226 aaKnown RBP16.47■□□□□ 0.23
CCDC28B-201ENST00000373602 ADAMTSL5Q6ZMM2 481 aa16.47■□□□□ 0.23
CCDC28B-201ENST00000373602 OR2K2Q8NGT1 345 aa16.47■□□□□ 0.23
CCDC28B-201ENST00000373602 CCDC140Q96MF4 163 aa16.47■□□□□ 0.23
CCDC28B-201ENST00000373602 SMIM31A0A1B0GVY4 71 aa16.46■□□□□ 0.23
CCDC28B-201ENST00000373602 PGLYRP1O75594 196 aaPredicted RBP16.46■□□□□ 0.23
CCDC28B-201ENST00000373602 REG1AP05451 166 aa16.46■□□□□ 0.23
CCDC28B-201ENST00000373602 DMBX1Q8NFW5 382 aa16.46■□□□□ 0.23
CCDC28B-201ENST00000373602 OR6F1Q8NGZ6 308 aa16.46■□□□□ 0.23
CCDC28B-201ENST00000373602 SRSF8Q9BRL6 282 aaKnown RBP16.46■□□□□ 0.23
CCDC28B-201ENST00000373602 COMMD5Q9GZQ3 224 aa16.46■□□□□ 0.23
CCDC28B-201ENST00000373602 FXYD6Q9H0Q3 95 aa16.46■□□□□ 0.23
CCDC28B-201ENST00000373602 IGLV11-55A0A075B6I3 123 aa16.45■□□□□ 0.22
CCDC28B-201ENST00000373602 IGLC7A0M8Q6 106 aa16.45■□□□□ 0.22
CCDC28B-201ENST00000373602 IZUMO1RA6ND01 250 aa16.45■□□□□ 0.22
CCDC28B-201ENST00000373602 OR2C1O95371 312 aa16.45■□□□□ 0.22
CCDC28B-201ENST00000373602 IGHV3-23P01764 117 aa16.45■□□□□ 0.22
CCDC28B-201ENST00000373602 RLN1P04808 185 aa16.45■□□□□ 0.22
CCDC28B-201ENST00000373602 F2RP25116 425 aa16.45■□□□□ 0.22
CCDC28B-201ENST00000373602 HLA-DMAP28067 261 aa16.45■□□□□ 0.22
CCDC28B-201ENST00000373602 HRH1P35367 487 aa16.45■□□□□ 0.22
CCDC28B-201ENST00000373602 EEF1AKMT3Q96AZ1 226 aa16.45■□□□□ 0.22
CCDC28B-201ENST00000373602 TM2D3Q9BRN9 247 aa16.45■□□□□ 0.22
CCDC28B-201ENST00000373602 ZMAT4Q9H898 229 aa16.45■□□□□ 0.22
CCDC28B-201ENST00000373602 SCPEP1Q9HB40 452 aa16.45■□□□□ 0.22
CCDC28B-201ENST00000373602 STAB2Q8WWQ8 2551 aa16.45■□□□□ 0.22
CCDC28B-201ENST00000373602 LGALS9O00182 355 aa16.44■□□□□ 0.22
CCDC28B-201ENST00000373602 GPR31O00270 319 aa16.44■□□□□ 0.22
CCDC28B-201ENST00000373602 HLA-AP01891 365 aaKnown RBP16.44■□□□□ 0.22
CCDC28B-201ENST00000373602 DEFA4P12838 97 aa16.44■□□□□ 0.22
CCDC28B-201ENST00000373602 CLEC19AQ6UXS0 136 aa16.44■□□□□ 0.22
CCDC28B-201ENST00000373602 GPHB5Q86YW7 130 aa16.44■□□□□ 0.22
CCDC28B-201ENST00000373602 CMTM1Q8IZ96 169 aa16.44■□□□□ 0.22
CCDC28B-201ENST00000373602 DGCR14Q96DF8 476 aaKnown RBP16.44■□□□□ 0.22
CCDC28B-201ENST00000373602 S4R3C0 116 aa16.44■□□□□ 0.22
CCDC28B-201ENST00000373602 MARCH11A6NNE9 402 aa16.43■□□□□ 0.22
CCDC28B-201ENST00000373602 RPA2P15927 270 aa16.43■□□□□ 0.22
CCDC28B-201ENST00000373602 ELK1P19419 428 aa16.43■□□□□ 0.22
CCDC28B-201ENST00000373602 ARL3P36405 182 aa16.43■□□□□ 0.22
CCDC28B-201ENST00000373602 LPAR6P43657 344 aa16.43■□□□□ 0.22
CCDC28B-201ENST00000373602 RORCP51449 518 aa16.43■□□□□ 0.22
CCDC28B-201ENST00000373602 ERVK-16P61578 105 aa16.43■□□□□ 0.22
CCDC28B-201ENST00000373602 CD300EQ496F6 205 aaPredicted RBP16.43■□□□□ 0.22
CCDC28B-201ENST00000373602 THOC7Q6I9Y2 204 aaKnown RBP16.43■□□□□ 0.22
CCDC28B-201ENST00000373602 GTSCR1Q86UQ5 136 aa16.43■□□□□ 0.22
CCDC28B-201ENST00000373602 CADM3Q8N126 398 aa16.43■□□□□ 0.22
CCDC28B-201ENST00000373602 QTRT1Q9BXR0 403 aaKnown RBP16.43■□□□□ 0.22
CCDC28B-201ENST00000373602 KMT2CQ8NEZ4 4911 aaKnown RBP16.43■□□□□ 0.22
CCDC28B-201ENST00000373602 C2orf70A6NJV1 201 aa16.42■□□□□ 0.22
CCDC28B-201ENST00000373602 C3orf84H3BNL1 204 aa16.42■□□□□ 0.22
CCDC28B-201ENST00000373602 HPGDSO60760 199 aa16.42■□□□□ 0.22
CCDC28B-201ENST00000373602 ZNF585BQ52M93 769 aa16.42■□□□□ 0.22
CCDC28B-201ENST00000373602 SNX29P2Q8IUI4 249 aa16.42■□□□□ 0.22
CCDC28B-201ENST00000373602 FCAMRQ8WWV6 532 aa16.42■□□□□ 0.22
CCDC28B-201ENST00000373602 CXorf58Q96LI9 332 aa16.42■□□□□ 0.22
CCDC28B-201ENST00000373602 TRBV7-1A0A0A6YYK4 115 aa16.41■□□□□ 0.22
CCDC28B-201ENST00000373602 MFSD2BA6NFX1 497 aa16.41■□□□□ 0.22
CCDC28B-201ENST00000373602 SMIM18P0DKX4 95 aa16.41■□□□□ 0.22
CCDC28B-201ENST00000373602 FOLR2P14207 255 aa16.41■□□□□ 0.22
CCDC28B-201ENST00000373602 TSPAN5P62079 268 aa16.41■□□□□ 0.22
CCDC28B-201ENST00000373602 DEFB114Q30KQ6 69 aa16.41■□□□□ 0.22
CCDC28B-201ENST00000373602 LAX1Q8IWV1 398 aa16.41■□□□□ 0.22
CCDC28B-201ENST00000373602 OR10W1Q8NGF6 305 aa16.41■□□□□ 0.22
CCDC28B-201ENST00000373602 DYNLRB2Q8TF09 96 aa16.41■□□□□ 0.22
CCDC28B-201ENST00000373602 NAA50Q9GZZ1 169 aaKnown RBP16.41■□□□□ 0.22
CCDC28B-201ENST00000373602 TEX50A0A1B0GTY4 177 aa16.4■□□□□ 0.22
CCDC28B-201ENST00000373602 ZNF785A8K8V0 405 aa16.4■□□□□ 0.22
CCDC28B-201ENST00000373602 GABARAPO95166 117 aa16.4■□□□□ 0.22
CCDC28B-201ENST00000373602 KRASP01116 189 aa16.4■□□□□ 0.22
CCDC28B-201ENST00000373602 TRAPPC2P0DI81 140 aa16.4■□□□□ 0.22
CCDC28B-201ENST00000373602 TRAPPC2BP0DI82 140 aa16.4■□□□□ 0.22
CCDC28B-201ENST00000373602 EDN2P20800 178 aa16.4■□□□□ 0.22
CCDC28B-201ENST00000373602 RCVRNP35243 200 aa16.4■□□□□ 0.22
CCDC28B-201ENST00000373602 CTF1Q16619 201 aa16.4■□□□□ 0.22
CCDC28B-201ENST00000373602 FAM106AQ4KMX7 169 aa16.4■□□□□ 0.22
CCDC28B-201ENST00000373602 LPCAT3Q6P1A2 487 aa16.4■□□□□ 0.22
CCDC28B-201ENST00000373602 HSD17B13Q7Z5P4 300 aaPredicted RBP16.4■□□□□ 0.22
CCDC28B-201ENST00000373602 OR1L8Q8NGR8 309 aa16.4■□□□□ 0.22
CCDC28B-201ENST00000373602 TECRQ9NZ01 308 aaKnown RBP16.4■□□□□ 0.22
CCDC28B-201ENST00000373602 CLEC3BP05452 202 aa16.39■□□□□ 0.21
CCDC28B-201ENST00000373602 G6PCP35575 357 aa16.39■□□□□ 0.21
CCDC28B-201ENST00000373602 PHLDA2Q53GA4 152 aa16.39■□□□□ 0.21
CCDC28B-201ENST00000373602 MZT2AQ6P582 158 aa16.39■□□□□ 0.21
CCDC28B-201ENST00000373602 GDPD1Q8N9F7 314 aa16.39■□□□□ 0.21
CCDC28B-201ENST00000373602 ZNF502Q8TBZ5 544 aa16.39■□□□□ 0.21
CCDC28B-201ENST00000373602 ZC4H2Q9NQZ6 224 aa16.39■□□□□ 0.21
CCDC28B-201ENST00000373602 NDUFA4L2Q9NRX3 87 aa16.39■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms