RNA–Protein interactions for RNA: ENST00000356922.5

LIG4-201, Transcript of DNA ligase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LIG4, Length 4,096 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG4-201ENST00000356922 KCNAB3O43448 404 aa3.17□□□□□ -1.9
LIG4-201ENST00000356922 SFT2D2O95562 160 aa3.17□□□□□ -1.9
LIG4-201ENST00000356922 IFNA21P01568 189 aa3.17□□□□□ -1.9
LIG4-201ENST00000356922 IFNA17P01571 189 aa3.17□□□□□ -1.9
LIG4-201ENST00000356922 HOXB5P09067 269 aa3.17□□□□□ -1.9
LIG4-201ENST00000356922 CD300CQ08708 224 aa3.17□□□□□ -1.9
LIG4-201ENST00000356922 TATDN3Q17R31 274 aa3.17□□□□□ -1.9
LIG4-201ENST00000356922 C5orf64Q2M2E5 130 aa3.17□□□□□ -1.9
LIG4-201ENST00000356922 VMA21Q3ZAQ7 101 aa3.17□□□□□ -1.9
LIG4-201ENST00000356922 Q5BKY6 102 aa3.17□□□□□ -1.9
LIG4-201ENST00000356922 ZNF329Q86UD4 541 aa3.17□□□□□ -1.9
LIG4-201ENST00000356922 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP3.17□□□□□ -1.9
LIG4-201ENST00000356922 ZBTB34Q8NCN2 500 aa3.17□□□□□ -1.9
LIG4-201ENST00000356922 OR4A16Q8NH70 328 aa3.17□□□□□ -1.9
LIG4-201ENST00000356922 CHAC2Q8WUX2 184 aa3.17□□□□□ -1.9
LIG4-201ENST00000356922 GPR146Q96CH1 333 aa3.17□□□□□ -1.9
LIG4-201ENST00000356922 ADTRPQ96IZ2 230 aa3.17□□□□□ -1.9
LIG4-201ENST00000356922 ALX4Q9H161 411 aaPredicted RBP3.17□□□□□ -1.9
LIG4-201ENST00000356922 RAB18Q9NP72 206 aa3.17□□□□□ -1.9
LIG4-201ENST00000356922 LIN7CQ9NUP9 197 aaKnown RBP3.17□□□□□ -1.9
LIG4-201ENST00000356922 GSKIPQ9P0R6 139 aa3.17□□□□□ -1.9
LIG4-201ENST00000356922 METTL1Q9UBP6 276 aaKnown RBP3.17□□□□□ -1.9
LIG4-201ENST00000356922 DMRT1Q9Y5R6 373 aa3.17□□□□□ -1.9
LIG4-201ENST00000356922 NBR2O15453 112 aa3.17□□□□□ -1.9
LIG4-201ENST00000356922 OR2F2O95006 317 aa3.17□□□□□ -1.9
LIG4-201ENST00000356922 CA2P00918 260 aa3.17□□□□□ -1.9
LIG4-201ENST00000356922 PRH1P02810 166 aa3.17□□□□□ -1.9
LIG4-201ENST00000356922 RNASE1P07998 156 aaKnown RBP3.17□□□□□ -1.9
LIG4-201ENST00000356922 DEFA4P12838 97 aa3.17□□□□□ -1.9
LIG4-201ENST00000356922 MDKP21741 143 aaPredicted RBP3.17□□□□□ -1.9
LIG4-201ENST00000356922 ECI1P42126 302 aa3.17□□□□□ -1.9
LIG4-201ENST00000356922 H2BFSP57053 126 aa3.17□□□□□ -1.9
LIG4-201ENST00000356922 NMSQ5H8A3 153 aa3.17□□□□□ -1.9
LIG4-201ENST00000356922 TCTEX1D4Q5JR98 221 aa3.17□□□□□ -1.9
LIG4-201ENST00000356922 CXorf66Q5JRM2 361 aaPredicted RBP3.17□□□□□ -1.9
LIG4-201ENST00000356922 PXDC1Q5TGL8 231 aa3.17□□□□□ -1.9
LIG4-201ENST00000356922 LIAT1Q6ZQX7 453 aa3.17□□□□□ -1.9
LIG4-201ENST00000356922 H2BFWTQ7Z2G1 175 aa3.17□□□□□ -1.9
LIG4-201ENST00000356922 PPP1R27Q86WC6 154 aa3.17□□□□□ -1.9
LIG4-201ENST00000356922 PDPNQ86YL7 162 aa3.17□□□□□ -1.9
LIG4-201ENST00000356922 FOXRED2Q8IWF2 684 aa3.17□□□□□ -1.9
LIG4-201ENST00000356922 C11orf44Q8N8P7 122 aa3.17□□□□□ -1.9
LIG4-201ENST00000356922 LINC01006Q8NI28 216 aa3.17□□□□□ -1.9
LIG4-201ENST00000356922 R3HDM4Q96D70 268 aa3.17□□□□□ -1.9
LIG4-201ENST00000356922 FYTTD1Q96QD9 318 aaKnown RBP3.17□□□□□ -1.9
LIG4-201ENST00000356922 TSNAXQ99598 290 aaKnown RBP3.17□□□□□ -1.9
LIG4-201ENST00000356922 NPFFR1Q9GZQ6 430 aa3.17□□□□□ -1.9
LIG4-201ENST00000356922 PLEKHA2Q9HB19 425 aa3.17□□□□□ -1.9
LIG4-201ENST00000356922 TMEM140Q9NV12 185 aa3.17□□□□□ -1.9
LIG4-201ENST00000356922 NUBP2Q9Y5Y2 271 aa3.17□□□□□ -1.9
LIG4-201ENST00000356922 ALG5Q9Y673 324 aa3.17□□□□□ -1.9
LIG4-201ENST00000356922 WSB1Q9Y6I7 421 aa3.17□□□□□ -1.9
LIG4-201ENST00000356922 TMEM50AO95807 157 aa3.17□□□□□ -1.9
LIG4-201ENST00000356922 SCGB1D2O95969 90 aa3.17□□□□□ -1.9
LIG4-201ENST00000356922 HPRT1P00492 218 aa3.17□□□□□ -1.9
LIG4-201ENST00000356922 HRASP01112 189 aa3.17□□□□□ -1.9
LIG4-201ENST00000356922 AREGP15514 252 aa3.17□□□□□ -1.9
LIG4-201ENST00000356922 MSMO1Q15800 293 aa3.17□□□□□ -1.9
LIG4-201ENST00000356922 AANATQ16613 207 aa3.17□□□□□ -1.9
LIG4-201ENST00000356922 CENPVQ7Z7K6 275 aaPredicted RBP3.17□□□□□ -1.9
LIG4-201ENST00000356922 LYG2Q86SG7 212 aa3.17□□□□□ -1.9
LIG4-201ENST00000356922 OR4S2Q8NH73 311 aa3.17□□□□□ -1.9
LIG4-201ENST00000356922 OR5R1Q8NH85 324 aa3.17□□□□□ -1.9
LIG4-201ENST00000356922 OR2T6Q8NHC8 308 aa3.17□□□□□ -1.9
LIG4-201ENST00000356922 CD300LFQ8TDQ1 290 aa3.17□□□□□ -1.9
LIG4-201ENST00000356922 MITD1Q8WV92 249 aa3.17□□□□□ -1.9
LIG4-201ENST00000356922 QTRT1Q9BXR0 403 aaKnown RBP3.17□□□□□ -1.9
LIG4-201ENST00000356922 COMMD5Q9GZQ3 224 aa3.17□□□□□ -1.9
LIG4-201ENST00000356922 KLK15Q9H2R5 256 aa3.17□□□□□ -1.9
LIG4-201ENST00000356922 RANBP3Q9H6Z4 567 aaPredicted RBP3.17□□□□□ -1.9
LIG4-201ENST00000356922 MEGF8Q7Z7M0 2845 aa3.17□□□□□ -1.9
LIG4-201ENST00000356922 TEX50A0A1B0GTY4 177 aa3.16□□□□□ -1.9
LIG4-201ENST00000356922 MSGN1A6NI15 193 aa3.16□□□□□ -1.9
LIG4-201ENST00000356922 CLDN34H7C241 214 aa3.16□□□□□ -1.9
LIG4-201ENST00000356922 ATP6V0E1O15342 81 aa3.16□□□□□ -1.9
LIG4-201ENST00000356922 RBFOX2O43251 390 aaKnown RBP eCLIP3.16□□□□□ -1.9
LIG4-201ENST00000356922 DUS4LO95620 317 aaKnown RBP3.16□□□□□ -1.9
LIG4-201ENST00000356922 PTTG1O95997 202 aa3.16□□□□□ -1.9
LIG4-201ENST00000356922 REG1AP05451 166 aa3.16□□□□□ -1.9
LIG4-201ENST00000356922 NKX2-5P52952 324 aaPredicted RBP3.16□□□□□ -1.9
LIG4-201ENST00000356922 MFAP2P55001 183 aa3.16□□□□□ -1.9
LIG4-201ENST00000356922 TAS2R31P59538 309 aa3.16□□□□□ -1.9
LIG4-201ENST00000356922 UBE2KP61086 200 aa3.16□□□□□ -1.9
LIG4-201ENST00000356922 TNXAQ16473 311 aa3.16□□□□□ -1.9
LIG4-201ENST00000356922 PRSS8Q16651 343 aa3.16□□□□□ -1.9
LIG4-201ENST00000356922 LFNGQ8NES3 379 aa3.16□□□□□ -1.9
LIG4-201ENST00000356922 OR11H7Q8NGC8 314 aa3.16□□□□□ -1.9
LIG4-201ENST00000356922 COQ8AQ8NI60 647 aa3.16□□□□□ -1.9
LIG4-201ENST00000356922 OSR1Q8TAX0 266 aaPredicted RBP3.16□□□□□ -1.9
LIG4-201ENST00000356922 LRRC20Q8TCA0 184 aa3.16□□□□□ -1.9
LIG4-201ENST00000356922 RBPMSQ93062 196 aaKnown RBP3.16□□□□□ -1.9
LIG4-201ENST00000356922 POMT1Q9Y6A1 747 aa3.16□□□□□ -1.9
LIG4-201ENST00000356922 TEX22C9J3V5 150 aa3.16□□□□□ -1.9
LIG4-201ENST00000356922 UPK2O00526 184 aa3.16□□□□□ -1.9
LIG4-201ENST00000356922 TSPAN4O14817 238 aa3.16□□□□□ -1.9
LIG4-201ENST00000356922 CREBL2O60519 120 aaPredicted RBP3.16□□□□□ -1.9
LIG4-201ENST00000356922 KBTBD11O94819 623 aa3.16□□□□□ -1.9
LIG4-201ENST00000356922 OR2A4O95047 310 aa3.16□□□□□ -1.9
LIG4-201ENST00000356922 RRASP10301 218 aa3.16□□□□□ -1.9
LIG4-201ENST00000356922 NQO2P16083 231 aa3.16□□□□□ -1.9
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms