RNA–Protein interactions for RNA: ENST00000343508.7

CSMD3-203, Transcript of CUB and Sushi multiple domains 3, humanhuman

TSL 1 (best) BASIC

Gene CSMD3, Length 13,018 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-203ENST00000343508 SRSF9Q13242 221 aaKnown RBP eCLIP4.05□□□□□ -1.76
CSMD3-203ENST00000343508 TDHQ8IZJ6 230 aa4.05□□□□□ -1.76
CSMD3-203ENST00000343508 HIGD1CA8MV81 97 aa4.05□□□□□ -1.76
CSMD3-203ENST00000343508 RAMP3O60896 148 aa4.05□□□□□ -1.76
CSMD3-203ENST00000343508 TDGF1P3P51864 188 aa4.05□□□□□ -1.76
CSMD3-203ENST00000343508 Q6AWC8 147 aa4.05□□□□□ -1.76
CSMD3-203ENST00000343508 PLPPR1Q8TBJ4 325 aa4.05□□□□□ -1.76
CSMD3-203ENST00000343508 LOC102724200A0A096LPH7 203 aaPredicted RBP4.05□□□□□ -1.76
CSMD3-203ENST00000343508 A0A1B0GW15 77 aa4.05□□□□□ -1.76
CSMD3-203ENST00000343508 PGPA6NDG6 321 aa4.05□□□□□ -1.76
CSMD3-203ENST00000343508 FBLL1A6NHQ2 334 aaKnown RBP4.05□□□□□ -1.76
CSMD3-203ENST00000343508 C17orf51A8MQB3 221 aa4.05□□□□□ -1.76
CSMD3-203ENST00000343508 SSTR5P35346 364 aa4.05□□□□□ -1.76
CSMD3-203ENST00000343508 KIR2DL2P43627 348 aaPredicted RBP4.05□□□□□ -1.76
CSMD3-203ENST00000343508 NMSQ5H8A3 153 aa4.05□□□□□ -1.76
CSMD3-203ENST00000343508 PNRC2Q9NPJ4 139 aaKnown RBP4.05□□□□□ -1.76
CSMD3-203ENST00000343508 TMEM177Q53S58 311 aa4.05□□□□□ -1.76
CSMD3-203ENST00000343508 SRXN1Q9BYN0 137 aa4.05□□□□□ -1.76
CSMD3-203ENST00000343508 ST20Q9HBF5 79 aa4.05□□□□□ -1.76
CSMD3-203ENST00000343508 BPTFQ12830 3046 aa4.05□□□□□ -1.76
CSMD3-203ENST00000343508 EGR1P18146 543 aa4.05□□□□□ -1.76
CSMD3-203ENST00000343508 ZNF83P51522 516 aa4.05□□□□□ -1.76
CSMD3-203ENST00000343508 TCF24Q7RTU0 167 aa4.05□□□□□ -1.76
CSMD3-203ENST00000343508 UBE2V1Q13404 147 aa4.04□□□□□ -1.76
CSMD3-203ENST00000343508 TMEM116Q8NCL8 245 aa4.04□□□□□ -1.76
CSMD3-203ENST00000343508 RNASE7Q9H1E1 156 aaKnown RBP4.04□□□□□ -1.76
CSMD3-203ENST00000343508 PLA2G3Q9NZ20 509 aa4.04□□□□□ -1.76
CSMD3-203ENST00000343508 TCF19Q9Y242 345 aa4.04□□□□□ -1.76
CSMD3-203ENST00000343508 C9JQL5 133 aa4.04□□□□□ -1.76
CSMD3-203ENST00000343508 RELQ04864 619 aaPredicted RBP4.04□□□□□ -1.76
CSMD3-203ENST00000343508 TCF23Q7RTU1 214 aa4.04□□□□□ -1.76
CSMD3-203ENST00000343508 LINC00305Q7Z4B0 112 aa4.04□□□□□ -1.76
CSMD3-203ENST00000343508 RPP25LQ8N5L8 163 aaKnown RBP4.04□□□□□ -1.76
CSMD3-203ENST00000343508 ZNF436-AS1Q8NC38 126 aaPredicted RBP4.04□□□□□ -1.76
CSMD3-203ENST00000343508 NUDT10Q8NFP7 164 aa4.04□□□□□ -1.76
CSMD3-203ENST00000343508 RPEQ96AT9 228 aa4.04□□□□□ -1.76
CSMD3-203ENST00000343508 PGLYRP4Q96LB8 373 aa4.04□□□□□ -1.76
CSMD3-203ENST00000343508 TMEM208Q9BTX3 173 aa4.04□□□□□ -1.76
CSMD3-203ENST00000343508 IGKV1D-13A0A0B4J2D9 117 aa4.04□□□□□ -1.76
CSMD3-203ENST00000343508 IGKV1-13P0DP09 117 aa4.04□□□□□ -1.76
CSMD3-203ENST00000343508 Q1RN00 199 aa4.04□□□□□ -1.76
CSMD3-203ENST00000343508 BHLHA15Q7RTS1 189 aaPredicted RBP4.04□□□□□ -1.76
CSMD3-203ENST00000343508 LPAL2Q16609 132 aa4.04□□□□□ -1.76
CSMD3-203ENST00000343508 HIST1H4GQ99525 98 aa4.04□□□□□ -1.76
CSMD3-203ENST00000343508 ARID1AO14497 2285 aa4.04□□□□□ -1.76
CSMD3-203ENST00000343508 DOCK9Q9BZ29 2069 aa4.04□□□□□ -1.76
CSMD3-203ENST00000343508 TRAV9-2A0A087WT02 112 aa4.04□□□□□ -1.76
CSMD3-203ENST00000343508 H3BVH4 76 aa4.04□□□□□ -1.76
CSMD3-203ENST00000343508 COX6A1P12074 109 aa4.04□□□□□ -1.76
CSMD3-203ENST00000343508 VKORC1L1Q8N0U8 176 aa4.04□□□□□ -1.76
CSMD3-203ENST00000343508 KLF14Q8TD94 323 aaPredicted RBP4.04□□□□□ -1.76
CSMD3-203ENST00000343508 NUDT11Q96G61 164 aa4.04□□□□□ -1.76
CSMD3-203ENST00000343508 SCNM1Q9BWG6 230 aa4.04□□□□□ -1.76
CSMD3-203ENST00000343508 LY96Q9Y6Y9 160 aa4.04□□□□□ -1.76
CSMD3-203ENST00000343508 IL6RP08887 468 aaPredicted RBP4.04□□□□□ -1.76
CSMD3-203ENST00000343508 C1QTNF9P0C862 333 aa4.04□□□□□ -1.76
CSMD3-203ENST00000343508 EFNB3Q15768 340 aa4.04□□□□□ -1.76
CSMD3-203ENST00000343508 FAM90A2PQ658T7 463 aa4.04□□□□□ -1.76
CSMD3-203ENST00000343508 MAP1LC3AQ9H492 121 aa4.04□□□□□ -1.76
CSMD3-203ENST00000343508 TRAV30A0A087WSZ9 112 aa4.04□□□□□ -1.76
CSMD3-203ENST00000343508 DLL1O00548 723 aa4.04□□□□□ -1.76
CSMD3-203ENST00000343508 PSMB2P49721 201 aa4.04□□□□□ -1.76
CSMD3-203ENST00000343508 MRPL27Q9P0M9 148 aaKnown RBP4.04□□□□□ -1.76
CSMD3-203ENST00000343508 A0A1B0GWJ7 208 aa4.04□□□□□ -1.76
CSMD3-203ENST00000343508 HYPMO75409 117 aa4.04□□□□□ -1.76
CSMD3-203ENST00000343508 RPS20P60866 119 aaKnown RBP4.04□□□□□ -1.76
CSMD3-203ENST00000343508 PSG9Q00887 426 aa4.04□□□□□ -1.76
CSMD3-203ENST00000343508 SPSB3Q6PJ21 355 aa4.04□□□□□ -1.76
CSMD3-203ENST00000343508 OR52E5Q8NH55 327 aa4.04□□□□□ -1.76
CSMD3-203ENST00000343508 NEU1Q99519 415 aa4.04□□□□□ -1.76
CSMD3-203ENST00000343508 ELOVL5Q9NYP7 299 aa4.04□□□□□ -1.76
CSMD3-203ENST00000343508 IGLV3-12A0A075B6K2 115 aa4.04□□□□□ -1.76
CSMD3-203ENST00000343508 A1L4Q6 167 aa4.04□□□□□ -1.76
CSMD3-203ENST00000343508 C15orf61A6NNL5 157 aa4.04□□□□□ -1.76
CSMD3-203ENST00000343508 CX3CL1P78423 397 aa4.04□□□□□ -1.76
CSMD3-203ENST00000343508 PCSK4Q6UW60 755 aa4.04□□□□□ -1.76
CSMD3-203ENST00000343508 CT55Q8WUE5 264 aa4.04□□□□□ -1.76
CSMD3-203ENST00000343508 DIRC2Q96SL1 478 aa4.04□□□□□ -1.76
CSMD3-203ENST00000343508 SLC25A10Q9UBX3 287 aaPredicted RBP4.04□□□□□ -1.76
CSMD3-203ENST00000343508 TM4SF5O14894 197 aa4.04□□□□□ -1.76
CSMD3-203ENST00000343508 RPL30P62888 115 aaKnown RBP4.04□□□□□ -1.76
CSMD3-203ENST00000343508 LDLRAD2Q5SZI1 272 aa4.04□□□□□ -1.76
CSMD3-203ENST00000343508 RBPMS2Q6ZRY4 209 aaKnown RBP4.04□□□□□ -1.76
CSMD3-203ENST00000343508 OR5A1Q8NGJ0 315 aa4.04□□□□□ -1.76
CSMD3-203ENST00000343508 OCC1Q8TAD7 63 aa4.04□□□□□ -1.76
CSMD3-203ENST00000343508 MS4A6AQ9H2W1 248 aa4.04□□□□□ -1.76
CSMD3-203ENST00000343508 TNFRSF19Q9NS68 423 aa4.04□□□□□ -1.76
CSMD3-203ENST00000343508 ZIC3O60481 467 aa4.03□□□□□ -1.76
CSMD3-203ENST00000343508 C9orf50Q5SZB4 431 aa4.03□□□□□ -1.76
CSMD3-203ENST00000343508 FAM214BQ7L5A3 538 aa4.03□□□□□ -1.76
CSMD3-203ENST00000343508 ZNF430Q9H8G1 570 aaPredicted RBP4.03□□□□□ -1.76
CSMD3-203ENST00000343508 GP6Q9HCN6 339 aa4.03□□□□□ -1.76
CSMD3-203ENST00000343508 MRPS16Q9Y3D3 137 aaKnown RBP4.03□□□□□ -1.76
CSMD3-203ENST00000343508 IGKV1D-8A0A087WSZ0 117 aa4.03□□□□□ -1.76
CSMD3-203ENST00000343508 CD55P08174 381 aa4.03□□□□□ -1.76
CSMD3-203ENST00000343508 SEC11AP67812 179 aa4.03□□□□□ -1.76
CSMD3-203ENST00000343508 HOXA4Q00056 320 aaPredicted RBP4.03□□□□□ -1.76
CSMD3-203ENST00000343508 ZNF441Q8N8Z8 693 aa4.03□□□□□ -1.76
CSMD3-203ENST00000343508 SEMA5BQ9P283 1151 aa4.03□□□□□ -1.76
CSMD3-203ENST00000343508 SNCGO76070 127 aa4.03□□□□□ -1.76
Retrieved 100 of 20,778 RNA–protein pairs in 103.4 ms