RNA–Protein interactions for RNA: ENST00000627371.1

PTCD3-220, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 5 BASIC

Gene PTCD3, Length 210 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-220ENST00000627371 CCDC71LQ8N9Z2 235 aa15.92■□□□□ 0.14
PTCD3-220ENST00000627371 TMEM167AQ8TBQ9 72 aa15.92■□□□□ 0.14
PTCD3-220ENST00000627371 ZNF430Q9H8G1 570 aaPredicted RBP15.92■□□□□ 0.14
PTCD3-220ENST00000627371 BET1LQ9NYM9 111 aa15.92■□□□□ 0.14
PTCD3-220ENST00000627371 COPZ2Q9P299 210 aa15.92■□□□□ 0.14
PTCD3-220ENST00000627371 NUBP2Q9Y5Y2 271 aa15.92■□□□□ 0.14
PTCD3-220ENST00000627371 TCRBV4S1A1TA0A5B7 111 aa15.91■□□□□ 0.14
PTCD3-220ENST00000627371 LPAR6P43657 344 aa15.91■□□□□ 0.14
PTCD3-220ENST00000627371 TMEM267Q0VDI3 215 aaPredicted RBP15.91■□□□□ 0.14
PTCD3-220ENST00000627371 FOXE3Q13461 319 aa15.91■□□□□ 0.14
PTCD3-220ENST00000627371 ZNF57Q68EA5 555 aaPredicted RBP15.91■□□□□ 0.14
PTCD3-220ENST00000627371 OR4A47Q6IF82 309 aa15.91■□□□□ 0.14
PTCD3-220ENST00000627371 MINDY2Q8NBR6 621 aa15.91■□□□□ 0.14
PTCD3-220ENST00000627371 OR4A5Q8NH83 315 aa15.91■□□□□ 0.14
PTCD3-220ENST00000627371 GRPEL2Q8TAA5 225 aa15.91■□□□□ 0.14
PTCD3-220ENST00000627371 R3HDM4Q96D70 268 aa15.91■□□□□ 0.14
PTCD3-220ENST00000627371 GPR132Q9UNW8 380 aa15.91■□□□□ 0.14
PTCD3-220ENST00000627371 C14orf166Q9Y224 244 aaKnown RBP15.91■□□□□ 0.14
PTCD3-220ENST00000627371 TSSC4Q9Y5U2 329 aaPredicted RBP15.91■□□□□ 0.14
PTCD3-220ENST00000627371 ADARB2-AS1A8MUL3 147 aa15.9■□□□□ 0.14
PTCD3-220ENST00000627371 H0Y980 276 aa15.9■□□□□ 0.14
PTCD3-220ENST00000627371 ELANEP08246 267 aa15.9■□□□□ 0.14
PTCD3-220ENST00000627371 INPP1P49441 399 aa15.9■□□□□ 0.14
PTCD3-220ENST00000627371 TNXAQ16473 311 aa15.9■□□□□ 0.14
PTCD3-220ENST00000627371 AKIRIN2Q53H80 203 aa15.9■□□□□ 0.14
PTCD3-220ENST00000627371 PRR31Q5SQ13 230 aa15.9■□□□□ 0.14
PTCD3-220ENST00000627371 RNF152Q8N8N0 203 aa15.9■□□□□ 0.14
PTCD3-220ENST00000627371 RTBDNQ9BSG5 229 aaPredicted RBP15.9■□□□□ 0.14
PTCD3-220ENST00000627371 C5orf66Q9H5L9 145 aa15.9■□□□□ 0.14
PTCD3-220ENST00000627371 MARCH11A6NNE9 402 aa15.89■□□□□ 0.13
PTCD3-220ENST00000627371 ACTL6BO94805 426 aa15.89■□□□□ 0.13
PTCD3-220ENST00000627371 PSMB8P28062 276 aa15.89■□□□□ 0.13
PTCD3-220ENST00000627371 ERVK-16P61578 105 aa15.89■□□□□ 0.13
PTCD3-220ENST00000627371 NSUN5P1Q3KNT7 163 aa15.89■□□□□ 0.13
PTCD3-220ENST00000627371 CXorf66Q5JRM2 361 aaPredicted RBP15.89■□□□□ 0.13
PTCD3-220ENST00000627371 KHDC1LQ5JSQ8 128 aa15.89■□□□□ 0.13
PTCD3-220ENST00000627371 UNQ5815/PRO19632Q6UWF5 114 aa15.89■□□□□ 0.13
PTCD3-220ENST00000627371 LFNGQ8NES3 379 aa15.89■□□□□ 0.13
PTCD3-220ENST00000627371 DMBX1Q8NFW5 382 aa15.89■□□□□ 0.13
PTCD3-220ENST00000627371 SRSF12Q8WXF0 261 aaKnown RBP15.89■□□□□ 0.13
PTCD3-220ENST00000627371 S100ZQ8WXG8 99 aa15.89■□□□□ 0.13
PTCD3-220ENST00000627371 SCGB3A2Q96PL1 93 aa15.89■□□□□ 0.13
PTCD3-220ENST00000627371 TMEM140Q9NV12 185 aa15.89■□□□□ 0.13
PTCD3-220ENST00000627371 FOXA2Q9Y261 457 aaPredicted RBP15.89■□□□□ 0.13
PTCD3-220ENST00000627371 CMYA5Q8N3K9 4069 aa15.89■□□□□ 0.13
PTCD3-220ENST00000627371 A0A1W2PN81 502 aa15.88■□□□□ 0.13
PTCD3-220ENST00000627371 IGLV1-40P01703 118 aa15.88■□□□□ 0.13
PTCD3-220ENST00000627371 IL6RP08887 468 aaPredicted RBP15.88■□□□□ 0.13
PTCD3-220ENST00000627371 IL7P13232 177 aa15.88■□□□□ 0.13
PTCD3-220ENST00000627371 MAS1LP35410 378 aa15.88■□□□□ 0.13
PTCD3-220ENST00000627371 CHRNA7P36544 502 aa15.88■□□□□ 0.13
PTCD3-220ENST00000627371 CADM3Q8N126 398 aa15.88■□□□□ 0.13
PTCD3-220ENST00000627371 TMEM68Q96MH6 324 aa15.88■□□□□ 0.13
PTCD3-220ENST00000627371 TP53RKQ96S44 253 aa15.88■□□□□ 0.13
PTCD3-220ENST00000627371 ZFP57Q9NU63 452 aa15.88■□□□□ 0.13
PTCD3-220ENST00000627371 VSIG4Q9Y279 399 aa15.88■□□□□ 0.13
PTCD3-220ENST00000627371 VWFP04275 2813 aa15.87■□□□□ 0.13
PTCD3-220ENST00000627371 C3orf85A0A1B0GTC6 90 aa15.87■□□□□ 0.13
PTCD3-220ENST00000627371 B3GALNT1O75752 331 aa15.87■□□□□ 0.13
PTCD3-220ENST00000627371 TSPAN15O95858 294 aa15.87■□□□□ 0.13
PTCD3-220ENST00000627371 RPLP1P05386 114 aaKnown RBP15.87■□□□□ 0.13
PTCD3-220ENST00000627371 FGF2P09038 288 aa15.87■□□□□ 0.13
PTCD3-220ENST00000627371 RPA2P15927 270 aa15.87■□□□□ 0.13
PTCD3-220ENST00000627371 RPL23AP62750 156 aaKnown RBP15.87■□□□□ 0.13
PTCD3-220ENST00000627371 RPL8P62917 257 aaKnown RBP15.87■□□□□ 0.13
PTCD3-220ENST00000627371 A0A1W2PRX2 142 aa15.86■□□□□ 0.13
PTCD3-220ENST00000627371 NAP1L6A6NFF2 107 aa15.86■□□□□ 0.13
PTCD3-220ENST00000627371 UPK2O00526 184 aa15.86■□□□□ 0.13
PTCD3-220ENST00000627371 SOX15O60248 233 aa15.86■□□□□ 0.13
PTCD3-220ENST00000627371 KRASP01116 189 aa15.86■□□□□ 0.13
PTCD3-220ENST00000627371 IGKV1-39P01597 117 aa15.86■□□□□ 0.13
PTCD3-220ENST00000627371 IGKV1D-39P04432 117 aa15.86■□□□□ 0.13
PTCD3-220ENST00000627371 SERPINE2P07093 398 aa15.86■□□□□ 0.13
PTCD3-220ENST00000627371 G6PCP35575 357 aa15.86■□□□□ 0.13
PTCD3-220ENST00000627371 C10orf55Q5SWW7 151 aa15.86■□□□□ 0.13
PTCD3-220ENST00000627371 ASPHD1Q5U4P2 390 aa15.86■□□□□ 0.13
PTCD3-220ENST00000627371 LCNL1Q6ZST4 164 aa15.86■□□□□ 0.13
PTCD3-220ENST00000627371 OR5M8Q8NGP6 311 aa15.86■□□□□ 0.13
PTCD3-220ENST00000627371 PHB2Q99623 299 aa15.86■□□□□ 0.13
PTCD3-220ENST00000627371 CCDC32Q9BV29 185 aa15.86■□□□□ 0.13
PTCD3-220ENST00000627371 NAA60Q9H7X0 242 aa15.86■□□□□ 0.13
PTCD3-220ENST00000627371 PKD1L1Q8TDX9 2849 aa15.85■□□□□ 0.13
PTCD3-220ENST00000627371 TRAV3A0A0B4J244 114 aa15.85■□□□□ 0.13
PTCD3-220ENST00000627371 MSGN1A6NI15 193 aa15.85■□□□□ 0.13
PTCD3-220ENST00000627371 CRYM-AS1A6NIL9 109 aa15.85■□□□□ 0.13
PTCD3-220ENST00000627371 HLA-GP17693 338 aa15.85■□□□□ 0.13
PTCD3-220ENST00000627371 UCP1P25874 307 aa15.85■□□□□ 0.13
PTCD3-220ENST00000627371 RPL27AP46776 148 aaKnown RBP15.85■□□□□ 0.13
PTCD3-220ENST00000627371 TMEM65Q6PI78 240 aa15.85■□□□□ 0.13
PTCD3-220ENST00000627371 MYOZ3Q8TDC0 251 aa15.85■□□□□ 0.13
PTCD3-220ENST00000627371 SEC22AQ96IW7 307 aa15.85■□□□□ 0.13
PTCD3-220ENST00000627371 SPIN2AQ99865 258 aa15.85■□□□□ 0.13
PTCD3-220ENST00000627371 SPIN2BQ9BPZ2 258 aa15.85■□□□□ 0.13
PTCD3-220ENST00000627371 SLC25A21Q9BQT8 299 aaPredicted RBP15.85■□□□□ 0.13
PTCD3-220ENST00000627371 C7orf50Q9BRJ6 194 aaKnown RBP15.85■□□□□ 0.13
PTCD3-220ENST00000627371 TEX13DA0A0J9YY54 714 aaPredicted RBP15.84■□□□□ 0.13
PTCD3-220ENST00000627371 OR5AC1P0C628 307 aa15.84■□□□□ 0.13
PTCD3-220ENST00000627371 PF4V1P10720 104 aa15.84■□□□□ 0.13
PTCD3-220ENST00000627371 SP6Q3SY56 376 aa15.84■□□□□ 0.13
PTCD3-220ENST00000627371 ADAD2Q8NCV1 583 aaKnown RBP15.84■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 48.6 ms