RNA–Protein interactions for RNA: ENST00000618700.4

UPF3A-211, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 1,210 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-211ENST00000618700 NRARPQ7Z6K4 114 aa15.58■□□□□ 0.08
UPF3A-211ENST00000618700 CADM3Q8N126 398 aa15.58■□□□□ 0.08
UPF3A-211ENST00000618700 DUSP18Q8NEJ0 188 aa15.58■□□□□ 0.08
UPF3A-211ENST00000618700 OR2T6Q8NHC8 308 aa15.58■□□□□ 0.08
UPF3A-211ENST00000618700 LHFPL5Q8TAF8 219 aa15.58■□□□□ 0.08
UPF3A-211ENST00000618700 TMEM167AQ8TBQ9 72 aa15.58■□□□□ 0.08
UPF3A-211ENST00000618700 ENKURQ8TC29 256 aa15.58■□□□□ 0.08
UPF3A-211ENST00000618700 SEC22AQ96IW7 307 aa15.58■□□□□ 0.08
UPF3A-211ENST00000618700 OR2A7Q96R45 310 aa15.58■□□□□ 0.08
UPF3A-211ENST00000618700 SERTAD4Q9NUC0 356 aa15.58■□□□□ 0.08
UPF3A-211ENST00000618700 BET1LQ9NYM9 111 aa15.58■□□□□ 0.08
UPF3A-211ENST00000618700 KCNIP3Q9Y2W7 256 aa15.58■□□□□ 0.08
UPF3A-211ENST00000618700 MMP24Q9Y5R2 645 aa15.58■□□□□ 0.08
UPF3A-211ENST00000618700 NUBP2Q9Y5Y2 271 aa15.58■□□□□ 0.08
UPF3A-211ENST00000618700 COL6A5A8TX70 2615 aa15.58■□□□□ 0.08
UPF3A-211ENST00000618700 CDS2O95674 445 aa15.57■□□□□ 0.08
UPF3A-211ENST00000618700 CA2P00918 260 aa15.57■□□□□ 0.08
UPF3A-211ENST00000618700 KRASP01116 189 aa15.57■□□□□ 0.08
UPF3A-211ENST00000618700 MDKP21741 143 aaPredicted RBP15.57■□□□□ 0.08
UPF3A-211ENST00000618700 G6PCP35575 357 aa15.57■□□□□ 0.08
UPF3A-211ENST00000618700 MECP2P51608 486 aaKnown RBP15.57■□□□□ 0.08
UPF3A-211ENST00000618700 ERVK-16P61578 105 aa15.57■□□□□ 0.08
UPF3A-211ENST00000618700 CX3CL1P78423 397 aa15.57■□□□□ 0.08
UPF3A-211ENST00000618700 PRSS8Q16651 343 aa15.57■□□□□ 0.08
UPF3A-211ENST00000618700 TRIM16LQ309B1 348 aa15.57■□□□□ 0.08
UPF3A-211ENST00000618700 TMEM95Q3KNT9 176 aa15.57■□□□□ 0.08
UPF3A-211ENST00000618700 SLC35E3Q7Z769 313 aa15.57■□□□□ 0.08
UPF3A-211ENST00000618700 OR4A5Q8NH83 315 aa15.57■□□□□ 0.08
UPF3A-211ENST00000618700 CLCC1Q96S66 551 aa15.57■□□□□ 0.08
UPF3A-211ENST00000618700 TMEM140Q9NV12 185 aa15.57■□□□□ 0.08
UPF3A-211ENST00000618700 KCNAB3O43448 404 aa15.56■□□□□ 0.08
UPF3A-211ENST00000618700 SFT2D2O95562 160 aa15.56■□□□□ 0.08
UPF3A-211ENST00000618700 IGKV1-5P01602 117 aa15.56■□□□□ 0.08
UPF3A-211ENST00000618700 P0C879 139 aa15.56■□□□□ 0.08
UPF3A-211ENST00000618700 ANXA7P20073 488 aaKnown RBP15.56■□□□□ 0.08
UPF3A-211ENST00000618700 VAMP1P23763 118 aa15.56■□□□□ 0.08
UPF3A-211ENST00000618700 VDAC2P45880 294 aaPredicted RBP15.56■□□□□ 0.08
UPF3A-211ENST00000618700 FOXL1Q12952 345 aa15.56■□□□□ 0.08
UPF3A-211ENST00000618700 DCTN2Q13561 401 aaKnown RBP15.56■□□□□ 0.08
UPF3A-211ENST00000618700 ZNF562Q6V9R5 426 aa15.56■□□□□ 0.08
UPF3A-211ENST00000618700 DMBX1Q8NFW5 382 aa15.56■□□□□ 0.08
UPF3A-211ENST00000618700 TMEM56Q96MV1 263 aa15.56■□□□□ 0.08
UPF3A-211ENST00000618700 ALX4Q9H161 411 aaPredicted RBP15.56■□□□□ 0.08
UPF3A-211ENST00000618700 ZNF430Q9H8G1 570 aaPredicted RBP15.56■□□□□ 0.08
UPF3A-211ENST00000618700 BEX1Q9HBH7 125 aa15.56■□□□□ 0.08
UPF3A-211ENST00000618700 TMEM56-RWDD3S4R434 201 aa15.56■□□□□ 0.08
UPF3A-211ENST00000618700 TNCP24821 2201 aa15.55■□□□□ 0.08
UPF3A-211ENST00000618700 PLXNB1O43157 2135 aa15.55■□□□□ 0.08
UPF3A-211ENST00000618700 TRAV6A0A075B6T7 132 aa15.55■□□□□ 0.08
UPF3A-211ENST00000618700 A0A1B0GUS0 222 aa15.55■□□□□ 0.08
UPF3A-211ENST00000618700 CLPSL1A2RUU4 121 aa15.55■□□□□ 0.08
UPF3A-211ENST00000618700 LINC01548A6NM66 108 aa15.55■□□□□ 0.08
UPF3A-211ENST00000618700 CREBL2O60519 120 aaPredicted RBP15.55■□□□□ 0.08
UPF3A-211ENST00000618700 FGF2P09038 288 aa15.55■□□□□ 0.08
UPF3A-211ENST00000618700 H2AFB2P0C5Z0 115 aa15.55■□□□□ 0.08
UPF3A-211ENST00000618700 OR4E1P0C645 316 aa15.55■□□□□ 0.08
UPF3A-211ENST00000618700 ANXA3P12429 323 aa15.55■□□□□ 0.08
UPF3A-211ENST00000618700 COMPP49747 757 aaPredicted RBP15.55■□□□□ 0.08
UPF3A-211ENST00000618700 MMD2Q8IY49 270 aa15.55■□□□□ 0.08
UPF3A-211ENST00000618700 RBPMSQ93062 196 aaKnown RBP15.55■□□□□ 0.08
UPF3A-211ENST00000618700 IL22RA2Q969J5 263 aa15.55■□□□□ 0.08
UPF3A-211ENST00000618700 WNT10AQ9GZT5 417 aa15.55■□□□□ 0.08
UPF3A-211ENST00000618700 OR51J1Q9H342 316 aa15.55■□□□□ 0.08
UPF3A-211ENST00000618700 PRR13Q9NZ81 148 aa15.55■□□□□ 0.08
UPF3A-211ENST00000618700 ZNF580Q9UK33 172 aa15.55■□□□□ 0.08
UPF3A-211ENST00000618700 C9orf170A2RU37 121 aa15.54■□□□□ 0.08
UPF3A-211ENST00000618700 UPK2O00526 184 aa15.54■□□□□ 0.08
UPF3A-211ENST00000618700 ATG12O94817 140 aa15.54■□□□□ 0.08
UPF3A-211ENST00000618700 PTTG1O95997 202 aa15.54■□□□□ 0.08
UPF3A-211ENST00000618700 IGF1P05019 195 aa15.54■□□□□ 0.08
UPF3A-211ENST00000618700 CRIP2P52943 208 aaPredicted RBP15.54■□□□□ 0.08
UPF3A-211ENST00000618700 PROK1P58294 105 aa15.54■□□□□ 0.08
UPF3A-211ENST00000618700 SRPXP78539 464 aa15.54■□□□□ 0.08
UPF3A-211ENST00000618700 ANKRD55Q3KP44 614 aa15.54■□□□□ 0.08
UPF3A-211ENST00000618700 ARSJQ5FYB0 599 aaPredicted RBP15.54■□□□□ 0.08
UPF3A-211ENST00000618700 SELENOHQ8IZQ5 122 aaKnown RBP15.54■□□□□ 0.08
UPF3A-211ENST00000618700 TENM1Q9UKZ4 2725 aa15.54■□□□□ 0.08
UPF3A-211ENST00000618700 TRAV3A0A0B4J244 114 aa15.53■□□□□ 0.08
UPF3A-211ENST00000618700 AP4M1O00189 453 aa15.53■□□□□ 0.08
UPF3A-211ENST00000618700 ATP6V0E1O15342 81 aa15.53■□□□□ 0.08
UPF3A-211ENST00000618700 HLA-AP01891 365 aaKnown RBP15.53■□□□□ 0.08
UPF3A-211ENST00000618700 OR9G9P0C7N8 305 aa15.53■□□□□ 0.08
UPF3A-211ENST00000618700 DHRS2Q13268 280 aa15.53■□□□□ 0.08
UPF3A-211ENST00000618700 AWAT1Q58HT5 328 aa15.53■□□□□ 0.08
UPF3A-211ENST00000618700 TMEM268Q5VZI3 342 aa15.53■□□□□ 0.08
UPF3A-211ENST00000618700 LYG2Q86SG7 212 aa15.53■□□□□ 0.08
UPF3A-211ENST00000618700 ZNF695Q8IW36 515 aa15.53■□□□□ 0.08
UPF3A-211ENST00000618700 LGI3Q8N145 548 aa15.53■□□□□ 0.08
UPF3A-211ENST00000618700 LRTM2Q8N967 370 aa15.53■□□□□ 0.08
UPF3A-211ENST00000618700 SPATA3Q8NHX4 192 aa15.53■□□□□ 0.08
UPF3A-211ENST00000618700 ARPC1AQ92747 370 aa15.53■□□□□ 0.08
UPF3A-211ENST00000618700 FBXO7Q9Y3I1 522 aa15.53■□□□□ 0.08
UPF3A-211ENST00000618700 RNF114Q9Y508 228 aa15.53■□□□□ 0.08
UPF3A-211ENST00000618700 EGR2P11161 476 aaPredicted RBP15.52■□□□□ 0.08
UPF3A-211ENST00000618700 MAS1LP35410 378 aa15.52■□□□□ 0.08
UPF3A-211ENST00000618700 AKR1C2P52895 323 aa15.52■□□□□ 0.08
UPF3A-211ENST00000618700 GNB1P62873 340 aa15.52■□□□□ 0.08
UPF3A-211ENST00000618700 RPL8P62917 257 aaKnown RBP15.52■□□□□ 0.08
UPF3A-211ENST00000618700 FXYD3Q14802 87 aa15.52■□□□□ 0.08
UPF3A-211ENST00000618700 TNXAQ16473 311 aa15.52■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 47.8 ms