RNA–Protein interactions for RNA: ENST00000574087.1

NUP88-208, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 548 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-208ENST00000574087 NEGR1Q7Z3B1 354 aa2.77□□□□□ -1.97
NUP88-208ENST00000574087 CBLN2Q8IUK8 224 aa2.77□□□□□ -1.97
NUP88-208ENST00000574087 GAPTQ8N292 157 aa2.77□□□□□ -1.97
NUP88-208ENST00000574087 FAM24BQ8N5W8 94 aa2.77□□□□□ -1.97
NUP88-208ENST00000574087 TSTD1Q8NFU3 115 aa2.77□□□□□ -1.97
NUP88-208ENST00000574087 OR51A2Q8NGJ7 313 aa2.77□□□□□ -1.97
NUP88-208ENST00000574087 OR1N2Q8NGR9 330 aa2.77□□□□□ -1.97
NUP88-208ENST00000574087 OR10R2Q8NGX6 335 aa2.77□□□□□ -1.97
NUP88-208ENST00000574087 OR2G3Q8NGZ4 309 aa2.77□□□□□ -1.97
NUP88-208ENST00000574087 ZNF502Q8TBZ5 544 aa2.77□□□□□ -1.97
NUP88-208ENST00000574087 ZNF675Q8TD23 568 aa2.77□□□□□ -1.97
NUP88-208ENST00000574087 OR5P3Q8WZ94 311 aa2.77□□□□□ -1.97
NUP88-208ENST00000574087 BORCS7Q96B45 105 aa2.77□□□□□ -1.97
NUP88-208ENST00000574087 HSFY1Q96LI6 401 aa2.77□□□□□ -1.97
NUP88-208ENST00000574087 MGLLQ99685 303 aa2.77□□□□□ -1.97
NUP88-208ENST00000574087 KRTAP4-3Q9BYR4 195 aa2.77□□□□□ -1.97
NUP88-208ENST00000574087 C20orf27Q9GZN8 174 aa2.77□□□□□ -1.97
NUP88-208ENST00000574087 LPAR5Q9H1C0 372 aa2.77□□□□□ -1.97
NUP88-208ENST00000574087 IFI27L2Q9H2X8 130 aa2.77□□□□□ -1.97
NUP88-208ENST00000574087 ZNF442Q9H7R0 627 aa2.77□□□□□ -1.97
NUP88-208ENST00000574087 REEP1Q9H902 201 aa2.77□□□□□ -1.97
NUP88-208ENST00000574087 TAF9BQ9HBM6 251 aa2.77□□□□□ -1.97
NUP88-208ENST00000574087 UQCC1Q9NVA1 299 aa2.77□□□□□ -1.97
NUP88-208ENST00000574087 RBM22Q9NW64 420 aaKnown RBP eCLIP2.77□□□□□ -1.97
NUP88-208ENST00000574087 SCN3BQ9NY72 215 aa2.77□□□□□ -1.97
NUP88-208ENST00000574087 COMMD9Q9P000 198 aa2.77□□□□□ -1.97
NUP88-208ENST00000574087 MRPL27Q9P0M9 148 aaKnown RBP2.77□□□□□ -1.97
NUP88-208ENST00000574087 SLC23A2Q9UGH3 650 aa2.77□□□□□ -1.97
NUP88-208ENST00000574087 UNC13BO14795 1591 aa2.77□□□□□ -1.97
NUP88-208ENST00000574087 PLXND1Q9Y4D7 1925 aa2.77□□□□□ -1.97
NUP88-208ENST00000574087 SETBP1Q9Y6X0 1596 aa2.77□□□□□ -1.97
NUP88-208ENST00000574087 MYO5AQ9Y4I1 1855 aaKnown RBP2.77□□□□□ -1.97
NUP88-208ENST00000574087 LAMA4Q16363 1823 aa2.77□□□□□ -1.97
NUP88-208ENST00000574087 FOCADQ5VW36 1801 aa2.77□□□□□ -1.97
NUP88-208ENST00000574087 PARP4Q9UKK3 1724 aaKnown RBP2.76□□□□□ -1.97
NUP88-208ENST00000574087 PREX2Q70Z35 1606 aa2.76□□□□□ -1.97
NUP88-208ENST00000574087 CIB4A0PJX0 185 aa2.76□□□□□ -1.97
NUP88-208ENST00000574087 TMEM72A0PK05 275 aa2.76□□□□□ -1.97
NUP88-208ENST00000574087 LRCOL1A6NCL2 159 aa2.76□□□□□ -1.97
NUP88-208ENST00000574087 LYRM9A8MSI8 78 aa2.76□□□□□ -1.97
NUP88-208ENST00000574087 FABP5P3A8MUU1 101 aa2.76□□□□□ -1.97
NUP88-208ENST00000574087 RPL36A-HNRNPH2H7BZ11 118 aa2.76□□□□□ -1.97
NUP88-208ENST00000574087 CCL21O00585 134 aa2.76□□□□□ -1.97
NUP88-208ENST00000574087 NME4O00746 187 aa2.76□□□□□ -1.97
NUP88-208ENST00000574087 UBFD1O14562 309 aaKnown RBP2.76□□□□□ -1.97
NUP88-208ENST00000574087 GABARAPO95166 117 aa2.76□□□□□ -1.97
NUP88-208ENST00000574087 CDRT1O95170 752 aa2.76□□□□□ -1.97
NUP88-208ENST00000574087 AIFM1O95831 613 aa2.76□□□□□ -1.97
NUP88-208ENST00000574087 IGHG2P01859 326 aa2.76□□□□□ -1.97
NUP88-208ENST00000574087 CRYBA1P05813 215 aa2.76□□□□□ -1.97
NUP88-208ENST00000574087 ADRA2AP08913 450 aa2.76□□□□□ -1.97
NUP88-208ENST00000574087 MRPL3P09001 348 aaKnown RBP2.76□□□□□ -1.97
NUP88-208ENST00000574087 SPNP16150 400 aa2.76□□□□□ -1.97
NUP88-208ENST00000574087 ZNF708P17019 499 aa2.76□□□□□ -1.97
NUP88-208ENST00000574087 RPL7P18124 248 aaKnown RBP2.76□□□□□ -1.97
NUP88-208ENST00000574087 TCN2P20062 427 aa2.76□□□□□ -1.97
NUP88-208ENST00000574087 CRHBPP24387 322 aa2.76□□□□□ -1.97
NUP88-208ENST00000574087 ARL2P36404 184 aa2.76□□□□□ -1.97
NUP88-208ENST00000574087 CXCL12P48061 93 aa2.76□□□□□ -1.97
NUP88-208ENST00000574087 NCS1P62166 190 aa2.76□□□□□ -1.97
NUP88-208ENST00000574087 SMAGPQ0VAQ4 97 aa2.76□□□□□ -1.97
NUP88-208ENST00000574087 FABP9Q0Z7S8 132 aa2.76□□□□□ -1.97
NUP88-208ENST00000574087 FZD2Q14332 565 aa2.76□□□□□ -1.97
NUP88-208ENST00000574087 PAFAH1B3Q15102 231 aaKnown RBP2.76□□□□□ -1.97
NUP88-208ENST00000574087 RHEBQ15382 184 aa2.76□□□□□ -1.97
NUP88-208ENST00000574087 SSX1Q16384 188 aa2.76□□□□□ -1.97
NUP88-208ENST00000574087 DEFB116Q30KQ4 102 aa2.76□□□□□ -1.97
NUP88-208ENST00000574087 KDM4DQ6B0I6 523 aa2.76□□□□□ -1.97
NUP88-208ENST00000574087 LCN12Q6JVE5 192 aa2.76□□□□□ -1.97
NUP88-208ENST00000574087 NAA40Q86UY6 237 aa2.76□□□□□ -1.97
NUP88-208ENST00000574087 TCTEX1D1Q8N7M0 179 aa2.76□□□□□ -1.97
NUP88-208ENST00000574087 BPIFB6Q8NFQ5 453 aa2.76□□□□□ -1.97
NUP88-208ENST00000574087 OR5A2Q8NGI9 324 aa2.76□□□□□ -1.97
NUP88-208ENST00000574087 OR1S1Q8NH92 325 aa2.76□□□□□ -1.97
NUP88-208ENST00000574087 CYGBQ8WWM9 190 aa2.76□□□□□ -1.97
NUP88-208ENST00000574087 GPR146Q96CH1 333 aa2.76□□□□□ -1.97
NUP88-208ENST00000574087 AURKBQ96GD4 344 aaPredicted RBP2.76□□□□□ -1.97
NUP88-208ENST00000574087 BMFQ96LC9 184 aa2.76□□□□□ -1.97
NUP88-208ENST00000574087 LINC00052Q96N35 136 aa2.76□□□□□ -1.97
NUP88-208ENST00000574087 RDH12Q96NR8 316 aa2.76□□□□□ -1.97
NUP88-208ENST00000574087 MS4A4EQ96PG1 132 aa2.76□□□□□ -1.97
NUP88-208ENST00000574087 OR4K3Q96R72 315 aa2.76□□□□□ -1.97
NUP88-208ENST00000574087 GPR21Q99679 349 aa2.76□□□□□ -1.97
NUP88-208ENST00000574087 ZNF436Q9C0F3 470 aaPredicted RBP2.76□□□□□ -1.97
NUP88-208ENST00000574087 EXOSC4Q9NPD3 245 aaKnown RBP2.76□□□□□ -1.97
NUP88-208ENST00000574087 ACER3Q9NUN7 267 aa2.76□□□□□ -1.97
NUP88-208ENST00000574087 FAM49BQ9NUQ9 324 aa2.76□□□□□ -1.97
NUP88-208ENST00000574087 NAT8Q9UHE5 227 aa2.76□□□□□ -1.97
NUP88-208ENST00000574087 HDGFL3Q9Y3E1 203 aa2.76□□□□□ -1.97
NUP88-208ENST00000574087 MAP2P11137 1827 aaKnown RBP2.76□□□□□ -1.97
NUP88-208ENST00000574087 SLIT3O75094 1523 aa2.76□□□□□ -1.97
NUP88-208ENST00000574087 CPS1P31327 1500 aa2.76□□□□□ -1.97
NUP88-208ENST00000574087 ABCC1P33527 1531 aa2.76□□□□□ -1.97
NUP88-208ENST00000574087 NEXMIFQ5QGS0 1516 aa2.76□□□□□ -1.97
NUP88-208ENST00000574087 PPLO60437 1756 aa2.76□□□□□ -1.97
NUP88-208ENST00000574087 C4AP0C0L4 1744 aa2.76□□□□□ -1.97
NUP88-208ENST00000574087 C4BP0C0L5 1744 aa2.76□□□□□ -1.97
NUP88-208ENST00000574087 EDC4Q6P2E9 1401 aaKnown RBP2.76□□□□□ -1.97
NUP88-208ENST00000574087 ADAMTS13Q76LX8 1427 aa2.76□□□□□ -1.97
NUP88-208ENST00000574087 CLTCQ00610 1675 aaKnown RBP2.76□□□□□ -1.97
Retrieved 100 of 20,778 RNA–protein pairs in 38.1 ms