RNA–Protein interactions for RNA: ENST00000565778.6

CLN3-219, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 688 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-219ENST00000565778 OR9G4Q8NGQ1 327 aa15.87■□□□□ 0.13
CLN3-219ENST00000565778 WWC2-AS2Q96NR7 200 aa15.87■□□□□ 0.13
CLN3-219ENST00000565778 U3KQK5 164 aa15.87■□□□□ 0.13
CLN3-219ENST00000565778 SULT1C2O00338 296 aa15.86■□□□□ 0.13
CLN3-219ENST00000565778 RFX2P48378 723 aa15.86■□□□□ 0.13
CLN3-219ENST00000565778 TAS2R20P59543 309 aa15.86■□□□□ 0.13
CLN3-219ENST00000565778 HERV-K104P61576 105 aa15.86■□□□□ 0.13
CLN3-219ENST00000565778 CATR1Q13166 79 aa15.86■□□□□ 0.13
CLN3-219ENST00000565778 TMEM17Q86X19 198 aa15.86■□□□□ 0.13
CLN3-219ENST00000565778 SLC25A46Q96AG3 418 aa15.86■□□□□ 0.13
CLN3-219ENST00000565778 FUNDC2Q9BWH2 189 aa15.86■□□□□ 0.13
CLN3-219ENST00000565778 EHFQ9NZC4 300 aa15.86■□□□□ 0.13
CLN3-219ENST00000565778 DNAH9Q9NYC9 4486 aa15.86■□□□□ 0.13
CLN3-219ENST00000565778 TRBV9A0A0B4J1U6 114 aa15.85■□□□□ 0.13
CLN3-219ENST00000565778 IGLV1-51P01701 117 aa15.85■□□□□ 0.13
CLN3-219ENST00000565778 PMP2P02689 132 aa15.85■□□□□ 0.13
CLN3-219ENST00000565778 IL6RP08887 468 aaPredicted RBP15.85■□□□□ 0.13
CLN3-219ENST00000565778 PRSS3P35030 304 aa15.85■□□□□ 0.13
CLN3-219ENST00000565778 ZNF45Q02386 682 aa15.85■□□□□ 0.13
CLN3-219ENST00000565778 DHRS11Q6UWP2 260 aa15.85■□□□□ 0.13
CLN3-219ENST00000565778 ZNF818PQ6ZRF7 136 aa15.85■□□□□ 0.13
CLN3-219ENST00000565778 NECAP1Q8NC96 275 aa15.85■□□□□ 0.13
CLN3-219ENST00000565778 KCTD12Q96CX2 325 aaKnown RBP15.85■□□□□ 0.13
CLN3-219ENST00000565778 HRASLSQ9HDD0 168 aa15.85■□□□□ 0.13
CLN3-219ENST00000565778 SLC2A9Q9NRM0 540 aa15.85■□□□□ 0.13
CLN3-219ENST00000565778 COMMD3Q9UBI1 195 aa15.85■□□□□ 0.13
CLN3-219ENST00000565778 ADAM30Q9UKF2 790 aa15.85■□□□□ 0.13
CLN3-219ENST00000565778 SORL1Q92673 2214 aa15.84■□□□□ 0.13
CLN3-219ENST00000565778 SMIM31A0A1B0GVY4 71 aa15.84■□□□□ 0.13
CLN3-219ENST00000565778 TEX22C9J3V5 150 aa15.84■□□□□ 0.13
CLN3-219ENST00000565778 E7EUB6 86 aa15.84■□□□□ 0.13
CLN3-219ENST00000565778 OR2J3O76001 311 aa15.84■□□□□ 0.13
CLN3-219ENST00000565778 VBP1P61758 197 aa15.84■□□□□ 0.13
CLN3-219ENST00000565778 NCS1P62166 190 aa15.84■□□□□ 0.13
CLN3-219ENST00000565778 RPL8P62917 257 aaKnown RBP15.84■□□□□ 0.13
CLN3-219ENST00000565778 EXOSC2Q13868 293 aaKnown RBP15.84■□□□□ 0.13
CLN3-219ENST00000565778 OR51H1Q8NH63 302 aa15.84■□□□□ 0.13
CLN3-219ENST00000565778 ZNF257Q9Y2Q1 563 aa15.84■□□□□ 0.13
CLN3-219ENST00000565778 TNCP24821 2201 aa15.83■□□□□ 0.13
CLN3-219ENST00000565778 TRIM64CA6NLI5 447 aa15.83■□□□□ 0.12
CLN3-219ENST00000565778 RBFOX2O43251 390 aaKnown RBP eCLIP15.83■□□□□ 0.12
CLN3-219ENST00000565778 HPRT1P00492 218 aa15.83■□□□□ 0.12
CLN3-219ENST00000565778 GNRHRP30968 328 aa15.83■□□□□ 0.12
CLN3-219ENST00000565778 AADACL3Q5VUY0 350 aa15.83■□□□□ 0.12
CLN3-219ENST00000565778 OR4A47Q6IF82 309 aa15.83■□□□□ 0.12
CLN3-219ENST00000565778 IL34Q6ZMJ4 242 aa15.83■□□□□ 0.12
CLN3-219ENST00000565778 OR5H2Q8NGV7 314 aa15.83■□□□□ 0.12
CLN3-219ENST00000565778 OR4A5Q8NH83 315 aa15.83■□□□□ 0.12
CLN3-219ENST00000565778 BORCS5Q969J3 196 aa15.83■□□□□ 0.12
CLN3-219ENST00000565778 ZNF2Q9BSG1 426 aaPredicted RBP15.83■□□□□ 0.12
CLN3-219ENST00000565778 BET1LQ9NYM9 111 aa15.83■□□□□ 0.12
CLN3-219ENST00000565778 FBXL7Q9UJT9 491 aa15.83■□□□□ 0.12
CLN3-219ENST00000565778 NPIPB5A8MRT5 1133 aa15.82■□□□□ 0.12
CLN3-219ENST00000565778 H0Y980 276 aa15.82■□□□□ 0.12
CLN3-219ENST00000565778 EIF4EP06730 217 aaKnown RBP15.82■□□□□ 0.12
CLN3-219ENST00000565778 ZNF735P0CB33 412 aa15.82■□□□□ 0.12
CLN3-219ENST00000565778 NQO2P16083 231 aa15.82■□□□□ 0.12
CLN3-219ENST00000565778 HLA-GP17693 338 aa15.82■□□□□ 0.12
CLN3-219ENST00000565778 TAS2R31P59538 309 aa15.82■□□□□ 0.12
CLN3-219ENST00000565778 TAS2R46P59540 309 aa15.82■□□□□ 0.12
CLN3-219ENST00000565778 C15orf32Q32M92 178 aa15.82■□□□□ 0.12
CLN3-219ENST00000565778 SBSPONQ8IVN8 264 aa15.82■□□□□ 0.12
CLN3-219ENST00000565778 CD300LFQ8TDQ1 290 aa15.82■□□□□ 0.12
CLN3-219ENST00000565778 PEMTQ9UBM1 199 aa15.82■□□□□ 0.12
CLN3-219ENST00000565778 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP15.81■□□□□ 0.12
CLN3-219ENST00000565778 DHFRP00374 187 aa15.81■□□□□ 0.12
CLN3-219ENST00000565778 CSN3P07498 182 aa15.81■□□□□ 0.12
CLN3-219ENST00000565778 FRMD6-AS1P0C7T7 363 aa15.81■□□□□ 0.12
CLN3-219ENST00000565778 MYOD1P15172 320 aa15.81■□□□□ 0.12
CLN3-219ENST00000565778 AREGP15514 252 aa15.81■□□□□ 0.12
CLN3-219ENST00000565778 NAT1P18440 290 aa15.81■□□□□ 0.12
CLN3-219ENST00000565778 PSMB6P28072 239 aa15.81■□□□□ 0.12
CLN3-219ENST00000565778 C19orf35Q6ZS72 473 aa15.81■□□□□ 0.12
CLN3-219ENST00000565778 DMBX1Q8NFW5 382 aa15.81■□□□□ 0.12
CLN3-219ENST00000565778 OR6F1Q8NGZ6 308 aa15.81■□□□□ 0.12
CLN3-219ENST00000565778 ANAPC10Q9UM13 185 aa15.81■□□□□ 0.12
CLN3-219ENST00000565778 A0A1B0GW64 132 aa15.8■□□□□ 0.12
CLN3-219ENST00000565778 BMPR1BO00238 502 aa15.8■□□□□ 0.12
CLN3-219ENST00000565778 DEFA4P12838 97 aa15.8■□□□□ 0.12
CLN3-219ENST00000565778 HLA-DMAP28067 261 aa15.8■□□□□ 0.12
CLN3-219ENST00000565778 FAM209BQ5JX69 171 aa15.8■□□□□ 0.12
CLN3-219ENST00000565778 LYSMD2Q8IV50 215 aa15.8■□□□□ 0.12
CLN3-219ENST00000565778 PLEKHA2Q9HB19 425 aa15.8■□□□□ 0.12
CLN3-219ENST00000565778 UPK2O00526 184 aa15.79■□□□□ 0.12
CLN3-219ENST00000565778 PGLYRP1O75594 196 aaPredicted RBP15.79■□□□□ 0.12
CLN3-219ENST00000565778 NDUFB8O95169 186 aa15.79■□□□□ 0.12
CLN3-219ENST00000565778 APOA1P02647 267 aa15.79■□□□□ 0.12
CLN3-219ENST00000565778 REG1AP05451 166 aa15.79■□□□□ 0.12
CLN3-219ENST00000565778 CRYGCP07315 174 aa15.79■□□□□ 0.12
CLN3-219ENST00000565778 RPA2P15927 270 aa15.79■□□□□ 0.12
CLN3-219ENST00000565778 RORCP51449 518 aa15.79■□□□□ 0.12
CLN3-219ENST00000565778 Q8N1Y9 231 aa15.79■□□□□ 0.12
CLN3-219ENST00000565778 MOB3AQ96BX8 217 aa15.79■□□□□ 0.12
CLN3-219ENST00000565778 CMTM3Q96MX0 182 aa15.79■□□□□ 0.12
CLN3-219ENST00000565778 FANCD2OSQ96PS1 177 aa15.79■□□□□ 0.12
CLN3-219ENST00000565778 COMMD5Q9GZQ3 224 aa15.79■□□□□ 0.12
CLN3-219ENST00000565778 SIGLEC8Q9NYZ4 499 aa15.79■□□□□ 0.12
CLN3-219ENST00000565778 TRAV3A0A0B4J244 114 aa15.78■□□□□ 0.12
CLN3-219ENST00000565778 PPP5D1E7EU14 171 aa15.78■□□□□ 0.12
CLN3-219ENST00000565778 S1PR2O95136 353 aa15.78■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 41.7 ms