RNA–Protein interactions for RNA: ENST00000563112.1

CLK3-210, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 665 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-210ENST00000563112 GPHA2Q96T91 129 aa12.91□□□□□ -0.34
CLK3-210ENST00000563112 ASCL2Q99929 193 aa12.91□□□□□ -0.34
CLK3-210ENST00000563112 AKIP1Q9NQ31 210 aa12.91□□□□□ -0.34
CLK3-210ENST00000563112 U3KQK5 164 aa12.91□□□□□ -0.34
CLK3-210ENST00000563112 RBFOX2O43251 390 aaKnown RBP eCLIP12.9□□□□□ -0.34
CLK3-210ENST00000563112 PRH1P02810 166 aa12.9□□□□□ -0.34
CLK3-210ENST00000563112 SYNJ2BPP57105 145 aa12.9□□□□□ -0.34
CLK3-210ENST00000563112 BRWD1-AS2P59051 145 aa12.9□□□□□ -0.34
CLK3-210ENST00000563112 TAS2R20P59543 309 aa12.9□□□□□ -0.34
CLK3-210ENST00000563112 EXOSC2Q13868 293 aaKnown RBP12.9□□□□□ -0.34
CLK3-210ENST00000563112 FAM209BQ5JX69 171 aa12.9□□□□□ -0.34
CLK3-210ENST00000563112 TMEM17Q86X19 198 aa12.9□□□□□ -0.34
CLK3-210ENST00000563112 NECAP1Q8NC96 275 aa12.9□□□□□ -0.34
CLK3-210ENST00000563112 OR9G4Q8NGQ1 327 aa12.9□□□□□ -0.34
CLK3-210ENST00000563112 OR4A5Q8NH83 315 aa12.9□□□□□ -0.34
CLK3-210ENST00000563112 SLC25A46Q96AG3 418 aa12.9□□□□□ -0.34
CLK3-210ENST00000563112 EHFQ9NZC4 300 aa12.9□□□□□ -0.34
CLK3-210ENST00000563112 ZNF257Q9Y2Q1 563 aa12.9□□□□□ -0.34
CLK3-210ENST00000563112 TRBV9A0A0B4J1U6 114 aa12.89□□□□□ -0.35
CLK3-210ENST00000563112 SMIM31A0A1B0GVY4 71 aa12.89□□□□□ -0.35
CLK3-210ENST00000563112 HMX3A6NHT5 357 aa12.89□□□□□ -0.35
CLK3-210ENST00000563112 SULT1C2O00338 296 aa12.89□□□□□ -0.35
CLK3-210ENST00000563112 DHFRP00374 187 aa12.89□□□□□ -0.35
CLK3-210ENST00000563112 HPRT1P00492 218 aa12.89□□□□□ -0.35
CLK3-210ENST00000563112 IGLV1-51P01701 117 aa12.89□□□□□ -0.35
CLK3-210ENST00000563112 PRSS3P35030 304 aa12.89□□□□□ -0.35
CLK3-210ENST00000563112 TAS2R46P59540 309 aa12.89□□□□□ -0.35
CLK3-210ENST00000563112 RPL8P62917 257 aaKnown RBP12.89□□□□□ -0.35
CLK3-210ENST00000563112 CD300LFQ8TDQ1 290 aa12.89□□□□□ -0.35
CLK3-210ENST00000563112 FUNDC2Q9BWH2 189 aa12.89□□□□□ -0.35
CLK3-210ENST00000563112 HRASLSQ9HDD0 168 aa12.89□□□□□ -0.35
CLK3-210ENST00000563112 SLC2A9Q9NRM0 540 aa12.89□□□□□ -0.35
CLK3-210ENST00000563112 BET1LQ9NYM9 111 aa12.89□□□□□ -0.35
CLK3-210ENST00000563112 STAB2Q8WWQ8 2551 aa12.88□□□□□ -0.35
CLK3-210ENST00000563112 NPIPB5A8MRT5 1133 aa12.88□□□□□ -0.35
CLK3-210ENST00000563112 H0Y980 276 aa12.88□□□□□ -0.35
CLK3-210ENST00000563112 RBMXL2O75526 392 aaKnown RBP12.88□□□□□ -0.35
CLK3-210ENST00000563112 OR2J3O76001 311 aa12.88□□□□□ -0.35
CLK3-210ENST00000563112 TRBV12-3P01733 135 aa12.88□□□□□ -0.35
CLK3-210ENST00000563112 IL6RP08887 468 aaPredicted RBP12.88□□□□□ -0.35
CLK3-210ENST00000563112 TAS2R31P59538 309 aa12.88□□□□□ -0.35
CLK3-210ENST00000563112 ZNF45Q02386 682 aa12.88□□□□□ -0.35
CLK3-210ENST00000563112 AADACL3Q5VUY0 350 aa12.88□□□□□ -0.35
CLK3-210ENST00000563112 DHRS11Q6UWP2 260 aa12.88□□□□□ -0.35
CLK3-210ENST00000563112 ZNF818PQ6ZRF7 136 aa12.88□□□□□ -0.35
CLK3-210ENST00000563112 OR5H2Q8NGV7 314 aa12.88□□□□□ -0.35
CLK3-210ENST00000563112 CMTM3Q96MX0 182 aa12.88□□□□□ -0.35
CLK3-210ENST00000563112 COMMD3Q9UBI1 195 aa12.88□□□□□ -0.35
CLK3-210ENST00000563112 PEMTQ9UBM1 199 aa12.88□□□□□ -0.35
CLK3-210ENST00000563112 TRIM64CA6NLI5 447 aa12.87□□□□□ -0.35
CLK3-210ENST00000563112 TEX22C9J3V5 150 aa12.87□□□□□ -0.35
CLK3-210ENST00000563112 PMP2P02689 132 aa12.87□□□□□ -0.35
CLK3-210ENST00000563112 ZNF735P0CB33 412 aa12.87□□□□□ -0.35
CLK3-210ENST00000563112 NQO2P16083 231 aa12.87□□□□□ -0.35
CLK3-210ENST00000563112 HLA-GP17693 338 aa12.87□□□□□ -0.35
CLK3-210ENST00000563112 RFX2P48378 723 aa12.87□□□□□ -0.35
CLK3-210ENST00000563112 NCS1P62166 190 aa12.87□□□□□ -0.35
CLK3-210ENST00000563112 C15orf32Q32M92 178 aa12.87□□□□□ -0.35
CLK3-210ENST00000563112 OR4A47Q6IF82 309 aa12.87□□□□□ -0.35
CLK3-210ENST00000563112 HAPLN4Q86UW8 402 aa12.87□□□□□ -0.35
CLK3-210ENST00000563112 OR51H1Q8NH63 302 aa12.87□□□□□ -0.35
CLK3-210ENST00000563112 ZNF2Q9BSG1 426 aaPredicted RBP12.87□□□□□ -0.35
CLK3-210ENST00000563112 FBXL7Q9UJT9 491 aa12.87□□□□□ -0.35
CLK3-210ENST00000563112 ANAPC10Q9UM13 185 aa12.87□□□□□ -0.35
CLK3-210ENST00000563112 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP12.86□□□□□ -0.35
CLK3-210ENST00000563112 APOA1P02647 267 aa12.86□□□□□ -0.35
CLK3-210ENST00000563112 HIST1H1BP16401 226 aaKnown RBP12.86□□□□□ -0.35
CLK3-210ENST00000563112 NAT1P18440 290 aa12.86□□□□□ -0.35
CLK3-210ENST00000563112 PSMB6P28072 239 aa12.86□□□□□ -0.35
CLK3-210ENST00000563112 GNRHRP30968 328 aa12.86□□□□□ -0.35
CLK3-210ENST00000563112 VBP1P61758 197 aa12.86□□□□□ -0.35
CLK3-210ENST00000563112 SGPP2Q8IWX5 399 aa12.86□□□□□ -0.35
CLK3-210ENST00000563112 DMBX1Q8NFW5 382 aa12.86□□□□□ -0.35
CLK3-210ENST00000563112 OR6F1Q8NGZ6 308 aa12.86□□□□□ -0.35
CLK3-210ENST00000563112 MOB3AQ96BX8 217 aa12.86□□□□□ -0.35
CLK3-210ENST00000563112 COMMD5Q9GZQ3 224 aa12.86□□□□□ -0.35
CLK3-210ENST00000563112 PLEKHA2Q9HB19 425 aa12.86□□□□□ -0.35
CLK3-210ENST00000563112 SIGLEC8Q9NYZ4 499 aa12.86□□□□□ -0.35
CLK3-210ENST00000563112 E7EUB6 86 aa12.85□□□□□ -0.35
CLK3-210ENST00000563112 EIF4EP06730 217 aaKnown RBP12.85□□□□□ -0.35
CLK3-210ENST00000563112 CRYGCP07315 174 aa12.85□□□□□ -0.35
CLK3-210ENST00000563112 FRMD6-AS1P0C7T7 363 aa12.85□□□□□ -0.35
CLK3-210ENST00000563112 DEFA4P12838 97 aa12.85□□□□□ -0.35
CLK3-210ENST00000563112 POU2AF1Q16633 256 aa12.85□□□□□ -0.35
CLK3-210ENST00000563112 LCN12Q6JVE5 192 aa12.85□□□□□ -0.35
CLK3-210ENST00000563112 IL34Q6ZMJ4 242 aa12.85□□□□□ -0.35
CLK3-210ENST00000563112 CMTM1Q8IZ96 169 aa12.85□□□□□ -0.35
CLK3-210ENST00000563112 ADAM30Q9UKF2 790 aa12.85□□□□□ -0.35
CLK3-210ENST00000563112 BMPR1BO00238 502 aa12.84□□□□□ -0.35
CLK3-210ENST00000563112 UPK2O00526 184 aa12.84□□□□□ -0.35
CLK3-210ENST00000563112 CSN3P07498 182 aa12.84□□□□□ -0.35
CLK3-210ENST00000563112 AREGP15514 252 aa12.84□□□□□ -0.35
CLK3-210ENST00000563112 RORCP51449 518 aa12.84□□□□□ -0.35
CLK3-210ENST00000563112 ERVK-16P61578 105 aa12.84□□□□□ -0.35
CLK3-210ENST00000563112 TSPAN5P62079 268 aa12.84□□□□□ -0.35
CLK3-210ENST00000563112 MZT2AQ6P582 158 aa12.84□□□□□ -0.35
CLK3-210ENST00000563112 SBSPONQ8IVN8 264 aa12.84□□□□□ -0.35
CLK3-210ENST00000563112 SCPEP1Q9HB40 452 aa12.84□□□□□ -0.35
CLK3-210ENST00000563112 COMMD9Q9P000 198 aa12.84□□□□□ -0.35
CLK3-210ENST00000563112 NBEAL2Q6ZNJ1 2754 aa12.84□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 60 ms