RNA–Protein interactions for RNA: ENST00000561713.1

VPS35-202, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 589 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-202ENST00000561713 NEDD8Q15843 81 aa14.39□□□□□ -0.11
VPS35-202ENST00000561713 C15orf32Q32M92 178 aa14.39□□□□□ -0.11
VPS35-202ENST00000561713 IDNKQ5T6J7 187 aa14.39□□□□□ -0.11
VPS35-202ENST00000561713 ZNF773Q6PK81 442 aa14.39□□□□□ -0.11
VPS35-202ENST00000561713 FAM223AQ8IWN6 122 aa14.39□□□□□ -0.11
VPS35-202ENST00000561713 SECTM1Q8WVN6 248 aa14.39□□□□□ -0.11
VPS35-202ENST00000561713 SNAPC3Q92966 411 aa14.39□□□□□ -0.11
VPS35-202ENST00000561713 SPIN2AQ99865 258 aa14.39□□□□□ -0.11
VPS35-202ENST00000561713 SPIN2BQ9BPZ2 258 aa14.39□□□□□ -0.11
VPS35-202ENST00000561713 PLEKHA3Q9HB20 300 aa14.39□□□□□ -0.11
VPS35-202ENST00000561713 TRAV18A0A075B6X5 111 aa14.38□□□□□ -0.11
VPS35-202ENST00000561713 TRBV9A0A0B4J1U6 114 aa14.38□□□□□ -0.11
VPS35-202ENST00000561713 H0Y980 276 aa14.38□□□□□ -0.11
VPS35-202ENST00000561713 CTXN2P0C2S0 81 aa14.38□□□□□ -0.11
VPS35-202ENST00000561713 AREGP15514 252 aa14.38□□□□□ -0.11
VPS35-202ENST00000561713 RPL27AP46776 148 aaKnown RBP14.38□□□□□ -0.11
VPS35-202ENST00000561713 ARPC4P59998 168 aa14.38□□□□□ -0.11
VPS35-202ENST00000561713 LCN12Q6JVE5 192 aa14.38□□□□□ -0.11
VPS35-202ENST00000561713 GTSCR1Q86UQ5 136 aa14.38□□□□□ -0.11
VPS35-202ENST00000561713 TPRA1Q86W33 373 aa14.38□□□□□ -0.11
VPS35-202ENST00000561713 HSD17B10Q99714 261 aaKnown RBP14.38□□□□□ -0.11
VPS35-202ENST00000561713 CENPOQ9BU64 300 aa14.38□□□□□ -0.11
VPS35-202ENST00000561713 WFDC10AQ9H1F0 79 aa14.38□□□□□ -0.11
VPS35-202ENST00000561713 CCL28Q9NRJ3 127 aa14.38□□□□□ -0.11
VPS35-202ENST00000561713 MEIS3P1A6NDR6 274 aa14.37□□□□□ -0.11
VPS35-202ENST00000561713 SCGNO76038 276 aa14.37□□□□□ -0.11
VPS35-202ENST00000561713 JTBO76095 146 aa14.37□□□□□ -0.11
VPS35-202ENST00000561713 IFNA6P05013 189 aa14.37□□□□□ -0.11
VPS35-202ENST00000561713 REG1AP05451 166 aa14.37□□□□□ -0.11
VPS35-202ENST00000561713 IL6RP08887 468 aaPredicted RBP14.37□□□□□ -0.11
VPS35-202ENST00000561713 PUSL1Q8N0Z8 303 aaKnown RBP14.37□□□□□ -0.11
VPS35-202ENST00000561713 Q8N402 240 aa14.37□□□□□ -0.11
VPS35-202ENST00000561713 TTC9CQ8N5M4 171 aa14.37□□□□□ -0.11
VPS35-202ENST00000561713 BEST4Q8NFU0 473 aa14.37□□□□□ -0.11
VPS35-202ENST00000561713 OR13F1Q8NGS4 319 aa14.37□□□□□ -0.11
VPS35-202ENST00000561713 OR2A7Q96R45 310 aa14.37□□□□□ -0.11
VPS35-202ENST00000561713 Q9H521 79 aa14.37□□□□□ -0.11
VPS35-202ENST00000561713 FRAS1Q86XX4 4008 aa14.36□□□□□ -0.11
VPS35-202ENST00000561713 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP14.36□□□□□ -0.11
VPS35-202ENST00000561713 FCGR2CP31995 323 aa14.36□□□□□ -0.11
VPS35-202ENST00000561713 TGFBR1P36897 503 aa14.36□□□□□ -0.11
VPS35-202ENST00000561713 FXYD4P59646 89 aa14.36□□□□□ -0.11
VPS35-202ENST00000561713 TATDN3Q17R31 274 aa14.36□□□□□ -0.11
VPS35-202ENST00000561713 CD300EQ496F6 205 aaPredicted RBP14.36□□□□□ -0.11
VPS35-202ENST00000561713 MFSD4AQ8N468 514 aa14.36□□□□□ -0.11
VPS35-202ENST00000561713 NECAP1Q8NC96 275 aa14.36□□□□□ -0.11
VPS35-202ENST00000561713 TMEM167AQ8TBQ9 72 aa14.36□□□□□ -0.11
VPS35-202ENST00000561713 DYNLRB2Q8TF09 96 aa14.36□□□□□ -0.11
VPS35-202ENST00000561713 CACNG8Q8WXS5 425 aa14.36□□□□□ -0.11
VPS35-202ENST00000561713 PEMTQ9UBM1 199 aa14.36□□□□□ -0.11
VPS35-202ENST00000561713 FBXL7Q9UJT9 491 aa14.36□□□□□ -0.11
VPS35-202ENST00000561713 ZNF257Q9Y2Q1 563 aa14.36□□□□□ -0.11
VPS35-202ENST00000561713 DPPA5A6NC42 116 aa14.35□□□□□ -0.11
VPS35-202ENST00000561713 SLC22A5O76082 557 aa14.35□□□□□ -0.11
VPS35-202ENST00000561713 CD81P60033 236 aa14.35□□□□□ -0.11
VPS35-202ENST00000561713 TMEM17Q86X19 198 aa14.35□□□□□ -0.11
VPS35-202ENST00000561713 CCDC140Q96MF4 163 aa14.35□□□□□ -0.11
VPS35-202ENST00000561713 FAM110AQ9BQ89 295 aa14.35□□□□□ -0.11
VPS35-202ENST00000561713 TUBA4BQ9H853 241 aa14.35□□□□□ -0.11
VPS35-202ENST00000561713 ETV7Q9Y603 341 aa14.35□□□□□ -0.11
VPS35-202ENST00000561713 NDUFB8O95169 186 aa14.34□□□□□ -0.11
VPS35-202ENST00000561713 PPYP01298 95 aa14.34□□□□□ -0.11
VPS35-202ENST00000561713 TIMM50Q3ZCQ8 353 aa14.34□□□□□ -0.11
VPS35-202ENST00000561713 KRTAP17-1Q9BYP8 105 aa14.34□□□□□ -0.11
VPS35-202ENST00000561713 SIGLEC8Q9NYZ4 499 aa14.34□□□□□ -0.11
VPS35-202ENST00000561713 DMRT1Q9Y5R6 373 aa14.34□□□□□ -0.11
VPS35-202ENST00000561713 C2orf70A6NJV1 201 aa14.33□□□□□ -0.12
VPS35-202ENST00000561713 CGB1A6NKQ9 187 aa14.33□□□□□ -0.12
VPS35-202ENST00000561713 NPIPB5A8MRT5 1133 aa14.33□□□□□ -0.12
VPS35-202ENST00000561713 SULT1C2O00338 296 aa14.33□□□□□ -0.12
VPS35-202ENST00000561713 OR2C1O95371 312 aa14.33□□□□□ -0.12
VPS35-202ENST00000561713 CD7P09564 240 aa14.33□□□□□ -0.12
VPS35-202ENST00000561713 ZNF735P0CB33 412 aa14.33□□□□□ -0.12
VPS35-202ENST00000561713 RPA2P15927 270 aa14.33□□□□□ -0.12
VPS35-202ENST00000561713 MECP2P51608 486 aaKnown RBP14.33□□□□□ -0.12
VPS35-202ENST00000561713 OR4A47Q6IF82 309 aa14.33□□□□□ -0.12
VPS35-202ENST00000561713 CLEC19AQ6UXS0 136 aa14.33□□□□□ -0.12
VPS35-202ENST00000561713 ZNF66Q6ZN08 573 aa14.33□□□□□ -0.12
VPS35-202ENST00000561713 HOGA1Q86XE5 327 aa14.33□□□□□ -0.12
VPS35-202ENST00000561713 SPAG16Q8N0X2 631 aa14.33□□□□□ -0.12
VPS35-202ENST00000561713 VSTM2AQ8TAG5 236 aa14.33□□□□□ -0.12
VPS35-202ENST00000561713 FANCD2OSQ96PS1 177 aa14.33□□□□□ -0.12
VPS35-202ENST00000561713 SLC5A7Q9GZV3 580 aa14.33□□□□□ -0.12
VPS35-202ENST00000561713 AUNIPQ9H7T9 357 aa14.33□□□□□ -0.12
VPS35-202ENST00000561713 ZC4H2Q9NQZ6 224 aa14.33□□□□□ -0.12
VPS35-202ENST00000561713 TRAV3A0A0B4J244 114 aa14.32□□□□□ -0.12
VPS35-202ENST00000561713 MFSD2BA6NFX1 497 aa14.32□□□□□ -0.12
VPS35-202ENST00000561713 RPL8P62917 257 aaKnown RBP14.32□□□□□ -0.12
VPS35-202ENST00000561713 GUCA2BQ16661 112 aa14.32□□□□□ -0.12
VPS35-202ENST00000561713 SLC25A42Q86VD7 318 aa14.32□□□□□ -0.12
VPS35-202ENST00000561713 OR51H1Q8NH63 302 aa14.32□□□□□ -0.12
VPS35-202ENST00000561713 WDR89Q96FK6 387 aaPredicted RBP14.32□□□□□ -0.12
VPS35-202ENST00000561713 NEURL2Q9BR09 285 aa14.32□□□□□ -0.12
VPS35-202ENST00000561713 HRASLSQ9HDD0 168 aa14.32□□□□□ -0.12
VPS35-202ENST00000561713 SLC2A9Q9NRM0 540 aa14.32□□□□□ -0.12
VPS35-202ENST00000561713 FOLR2P14207 255 aa14.31□□□□□ -0.12
VPS35-202ENST00000561713 HLA-GP17693 338 aa14.31□□□□□ -0.12
VPS35-202ENST00000561713 PSMB6P28072 239 aa14.31□□□□□ -0.12
VPS35-202ENST00000561713 ARL3P36405 182 aa14.31□□□□□ -0.12
VPS35-202ENST00000561713 ZNF818PQ6ZRF7 136 aa14.31□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 38.3 ms